data_1J9C
#
_model_server_result.job_id            z4SCVjsYL1zDfSWtXIrLpw 
_model_server_result.datetime_utc      '2024-11-22 19:04:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1j9c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":375}' 
#
_entry.id    1J9C 
#
_exptl.entry_id    1J9C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          7 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.12 
_cell.angle_gamma         90 
_cell.entry_id            1J9C 
_cell.length_a            77.038 
_cell.length_b            68.302 
_cell.length_c            78.438 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1J9C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 49 T CYS 49 1_555 A SG CYS 57 T CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 A SG CYS 186 T CYS 186 1_555 A SG CYS 209 T CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 B SG CYS 3 L CYS 50 1_555 B SG CYS 14 L CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 B SG CYS 8 L CYS 55 1_555 B SG CYS 23 L CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 B SG CYS 25 L CYS 72 1_555 B SG CYS 34 L CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 B SG CYS 44 L CYS 91 1_555 B SG CYS 55 L CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf7 B SG CYS 51 L CYS 98 1_555 B SG CYS 65 L CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 B SG CYS 67 L CYS 114 1_555 B SG CYS 80 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf9 B SG CYS 88 L CYS 135 1_555 C SG CYS 110 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 C SG CYS 7 H CYS 22 1_555 C SG CYS 12 H CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 C SG CYS 26 H CYS 42 1_555 C SG CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf12 C SG CYS 158 H CYS 168 1_555 C SG CYS 177 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf13 C SG CYS 188 H CYS 191 1_555 C SG CYS 216 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
covale ? covale1 B OG SER 5 L SER 52 1_555 D C1 GLC . L GLC 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? 
covale ? covale2 B OG SER 13 L SER 60 1_555 E C1 FUL . L FUL 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? 
covale ? covale3 F C3 0Z6 . H 0Z6 1 1_555 C NE2 HIS 41 H HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? 
covale ? covale4 F C2 0Z6 . H 0Z6 1 1_555 C OG SER 192 H SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale5 C ND2 ASN 170 H ASN 175 1_555 G C1 NAG . H NAG 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
metalc ? metalc1 C OE1 GLU 58 H GLU 70 1_555 H CA CA . H CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc2 C O ASP 60 H ASP 72 1_555 H CA CA . H CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? 
metalc ? metalc3 C O GLU 63 H GLU 75 1_555 H CA CA . H CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? 
metalc ? metalc4 C OE2 GLU 68 H GLU 80 1_555 H CA CA . H CA 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc5 H CA CA . H CA 376 1_555 K O HOH . H HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 356 n n 
C1 O1 NAG sing 357 n n 
C1 O5 NAG sing 358 n n 
C1 H1 NAG sing 359 n n 
C2 C3 NAG sing 360 n n 
C2 N2 NAG sing 361 n n 
C2 H2 NAG sing 362 n n 
C3 C4 NAG sing 363 n n 
C3 O3 NAG sing 364 n n 
C3 H3 NAG sing 365 n n 
C4 C5 NAG sing 366 n n 
C4 O4 NAG sing 367 n n 
C4 H4 NAG sing 368 n n 
C5 C6 NAG sing 369 n n 
C5 O5 NAG sing 370 n n 
C5 H5 NAG sing 371 n n 
C6 O6 NAG sing 372 n n 
C6 H61 NAG sing 373 n n 
C6 H62 NAG sing 374 n n 
C7 C8 NAG sing 375 n n 
C7 N2 NAG sing 376 n n 
C7 O7 NAG doub 377 n n 
C8 H81 NAG sing 378 n n 
C8 H82 NAG sing 379 n n 
C8 H83 NAG sing 380 n n 
N2 HN2 NAG sing 381 n n 
O1 HO1 NAG sing 382 n n 
O3 HO3 NAG sing 383 n n 
O4 HO4 NAG sing 384 n n 
O6 HO6 NAG sing 385 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1J9C 
_atom_sites.fract_transf_matrix[1][1]    0.012981 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000481 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012758 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GLC L 1 352 52 GLC GLC . 
E 5 FUL L 1 360 60 FUL FUC . 
F 6 0Z6 H 1 1 1 0Z6 PHE . 
G 7 NAG H 1 375 175 NAG NAG . 
H 8 CA H 1 376 1 CA CA2 . 
I 9 HOH T 1 211 4 HOH WAT . 
I 9 HOH T 2 212 10 HOH WAT . 
I 9 HOH T 3 213 22 HOH WAT . 
I 9 HOH T 4 214 24 HOH WAT . 
I 9 HOH T 5 215 28 HOH WAT . 
I 9 HOH T 6 216 37 HOH WAT . 
I 9 HOH T 7 217 39 HOH WAT . 
I 9 HOH T 8 218 44 HOH WAT . 
I 9 HOH T 9 219 54 HOH WAT . 
I 9 HOH T 10 220 62 HOH WAT . 
I 9 HOH T 11 221 84 HOH WAT . 
I 9 HOH T 12 222 87 HOH WAT . 
I 9 HOH T 13 223 89 HOH WAT . 
I 9 HOH T 14 224 92 HOH WAT . 
I 9 HOH T 15 225 96 HOH WAT . 
I 9 HOH T 16 226 101 HOH WAT . 
I 9 HOH T 17 227 111 HOH WAT . 
I 9 HOH T 18 228 113 HOH WAT . 
I 9 HOH T 19 229 120 HOH WAT . 
I 9 HOH T 20 230 121 HOH WAT . 
I 9 HOH T 21 231 125 HOH WAT . 
J 9 HOH L 1 361 6 HOH WAT . 
J 9 HOH L 2 362 13 HOH WAT . 
J 9 HOH L 3 363 14 HOH WAT . 
J 9 HOH L 4 364 18 HOH WAT . 
J 9 HOH L 5 365 20 HOH WAT . 
J 9 HOH L 6 366 25 HOH WAT . 
J 9 HOH L 7 367 26 HOH WAT . 
J 9 HOH L 8 368 27 HOH WAT . 
J 9 HOH L 9 369 29 HOH WAT . 
J 9 HOH L 10 370 30 HOH WAT . 
J 9 HOH L 11 371 32 HOH WAT . 
J 9 HOH L 12 372 33 HOH WAT . 
J 9 HOH L 13 373 38 HOH WAT . 
J 9 HOH L 14 374 48 HOH WAT . 
J 9 HOH L 15 375 49 HOH WAT . 
J 9 HOH L 16 376 50 HOH WAT . 
J 9 HOH L 17 377 60 HOH WAT . 
J 9 HOH L 18 378 63 HOH WAT . 
J 9 HOH L 19 379 64 HOH WAT . 
J 9 HOH L 20 380 66 HOH WAT . 
J 9 HOH L 21 381 76 HOH WAT . 
J 9 HOH L 22 382 79 HOH WAT . 
J 9 HOH L 23 383 80 HOH WAT . 
J 9 HOH L 24 384 91 HOH WAT . 
J 9 HOH L 25 385 99 HOH WAT . 
J 9 HOH L 26 386 104 HOH WAT . 
J 9 HOH L 27 387 108 HOH WAT . 
J 9 HOH L 28 388 117 HOH WAT . 
J 9 HOH L 29 389 118 HOH WAT . 
J 9 HOH L 30 390 119 HOH WAT . 
J 9 HOH L 31 391 124 HOH WAT . 
K 9 HOH H 1 258 34 HOH WAT . 
K 9 HOH H 2 377 1 HOH WAT . 
K 9 HOH H 3 378 2 HOH WAT . 
K 9 HOH H 4 379 3 HOH WAT . 
K 9 HOH H 5 380 5 HOH WAT . 
K 9 HOH H 6 381 7 HOH WAT . 
K 9 HOH H 7 382 8 HOH WAT . 
K 9 HOH H 8 383 9 HOH WAT . 
K 9 HOH H 9 384 11 HOH WAT . 
K 9 HOH H 10 385 12 HOH WAT . 
K 9 HOH H 11 386 15 HOH WAT . 
K 9 HOH H 12 387 16 HOH WAT . 
K 9 HOH H 13 388 17 HOH WAT . 
K 9 HOH H 14 389 19 HOH WAT . 
K 9 HOH H 15 390 21 HOH WAT . 
K 9 HOH H 16 391 23 HOH WAT . 
K 9 HOH H 17 392 31 HOH WAT . 
K 9 HOH H 18 393 35 HOH WAT . 
K 9 HOH H 19 394 36 HOH WAT . 
K 9 HOH H 20 395 40 HOH WAT . 
K 9 HOH H 21 396 41 HOH WAT . 
K 9 HOH H 22 397 42 HOH WAT . 
K 9 HOH H 23 398 43 HOH WAT . 
K 9 HOH H 24 399 45 HOH WAT . 
K 9 HOH H 25 400 46 HOH WAT . 
K 9 HOH H 26 401 47 HOH WAT . 
K 9 HOH H 27 402 51 HOH WAT . 
K 9 HOH H 28 403 53 HOH WAT . 
K 9 HOH H 29 404 55 HOH WAT . 
K 9 HOH H 30 405 56 HOH WAT . 
K 9 HOH H 31 406 57 HOH WAT . 
K 9 HOH H 32 407 58 HOH WAT . 
K 9 HOH H 33 408 59 HOH WAT . 
K 9 HOH H 34 409 61 HOH WAT . 
K 9 HOH H 35 410 65 HOH WAT . 
K 9 HOH H 36 411 67 HOH WAT . 
K 9 HOH H 37 412 68 HOH WAT . 
K 9 HOH H 38 413 69 HOH WAT . 
K 9 HOH H 39 414 70 HOH WAT . 
K 9 HOH H 40 415 71 HOH WAT . 
K 9 HOH H 41 416 72 HOH WAT . 
K 9 HOH H 42 417 73 HOH WAT . 
K 9 HOH H 43 418 74 HOH WAT . 
K 9 HOH H 44 419 75 HOH WAT . 
K 9 HOH H 45 420 77 HOH WAT . 
K 9 HOH H 46 421 78 HOH WAT . 
K 9 HOH H 47 422 81 HOH WAT . 
K 9 HOH H 48 423 82 HOH WAT . 
K 9 HOH H 49 424 83 HOH WAT . 
K 9 HOH H 50 425 85 HOH WAT . 
K 9 HOH H 51 426 86 HOH WAT . 
K 9 HOH H 52 427 88 HOH WAT . 
K 9 HOH H 53 428 90 HOH WAT . 
K 9 HOH H 54 429 93 HOH WAT . 
K 9 HOH H 55 430 94 HOH WAT . 
K 9 HOH H 56 431 95 HOH WAT . 
K 9 HOH H 57 432 97 HOH WAT . 
K 9 HOH H 58 433 98 HOH WAT . 
K 9 HOH H 59 434 100 HOH WAT . 
K 9 HOH H 60 435 102 HOH WAT . 
K 9 HOH H 61 436 103 HOH WAT . 
K 9 HOH H 62 437 105 HOH WAT . 
K 9 HOH H 63 438 106 HOH WAT . 
K 9 HOH H 64 439 107 HOH WAT . 
K 9 HOH H 65 440 109 HOH WAT . 
K 9 HOH H 66 441 110 HOH WAT . 
K 9 HOH H 67 442 112 HOH WAT . 
K 9 HOH H 68 443 114 HOH WAT . 
K 9 HOH H 69 444 115 HOH WAT . 
K 9 HOH H 70 445 116 HOH WAT . 
K 9 HOH H 71 446 122 HOH WAT . 
K 9 HOH H 72 447 123 HOH WAT . 
K 9 HOH H 73 448 127 HOH WAT . 
K 9 HOH H 74 449 128 HOH WAT . 
K 9 HOH H 75 450 130 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 7 56.064 -5.61 30.555 1 110.34 ? C1 NAG 375 H 1 
HETATM 2 C C2 NAG . . . G 7 56.924 -4.35 30.777 1 110.34 ? C2 NAG 375 H 1 
HETATM 3 C C3 NAG . . . G 7 57.709 -4.454 32.096 1 110.34 ? C3 NAG 375 H 1 
HETATM 4 C C4 NAG . . . G 7 56.788 -4.832 33.267 1 110.34 ? C4 NAG 375 H 1 
HETATM 5 C C5 NAG . . . G 7 55.948 -6.066 32.903 1 110.34 ? C5 NAG 375 H 1 
HETATM 6 C C6 NAG . . . G 7 54.946 -6.466 33.977 1 110.34 ? C6 NAG 375 H 1 
HETATM 7 C C7 NAG . . . G 7 58.66 -5.15 29.296 1 110.34 ? C7 NAG 375 H 1 
HETATM 8 C C8 NAG . . . G 7 59.998 -5.263 30.01 1 110.34 ? C8 NAG 375 H 1 
HETATM 9 N N2 NAG . . . G 7 57.848 -4.164 29.672 1 110.34 ? N2 NAG 375 H 1 
HETATM 10 O O3 NAG . . . G 7 58.345 -3.214 32.374 1 110.34 ? O3 NAG 375 H 1 
HETATM 11 O O4 NAG . . . G 7 57.573 -5.111 34.42 1 110.34 ? O4 NAG 375 H 1 
HETATM 12 O O5 NAG . . . G 7 55.204 -5.821 31.685 1 110.34 ? O5 NAG 375 H 1 
HETATM 13 O O6 NAG . . . G 7 54.669 -5.391 34.864 1 110.34 ? O6 NAG 375 H 1 
HETATM 14 O O7 NAG . . . G 7 58.371 -5.953 28.407 1 110.34 ? O7 NAG 375 H 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#