data_1J9E # _model_server_result.job_id DqfoeXoFDxu76UGy-T8MTw _model_server_result.datetime_utc '2024-12-25 12:59:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":149}' # _entry.id 1J9E # _exptl.entry_id 1J9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J9E _cell.length_a 50.55 _cell.length_b 50.55 _cell.length_c 138.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1J9E _atom_sites.fract_transf_matrix[1][1] 0.019782 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 149 149 FMN FMN . C 3 HOH A 1 150 150 HOH HOH . C 3 HOH A 2 151 151 HOH HOH . C 3 HOH A 3 152 152 HOH HOH . C 3 HOH A 4 153 153 HOH HOH . C 3 HOH A 5 154 154 HOH HOH . C 3 HOH A 6 155 155 HOH HOH . C 3 HOH A 7 156 156 HOH HOH . C 3 HOH A 8 157 157 HOH HOH . C 3 HOH A 9 158 158 HOH HOH . C 3 HOH A 10 159 159 HOH HOH . C 3 HOH A 11 160 160 HOH HOH . C 3 HOH A 12 161 161 HOH HOH . C 3 HOH A 13 162 162 HOH HOH . C 3 HOH A 14 163 163 HOH HOH . C 3 HOH A 15 164 164 HOH HOH . C 3 HOH A 16 165 165 HOH HOH . C 3 HOH A 17 166 166 HOH HOH . C 3 HOH A 18 167 167 HOH HOH . C 3 HOH A 19 168 168 HOH HOH . C 3 HOH A 20 169 169 HOH HOH . C 3 HOH A 21 170 170 HOH HOH . C 3 HOH A 22 171 171 HOH HOH . C 3 HOH A 23 172 172 HOH HOH . C 3 HOH A 24 173 173 HOH HOH . C 3 HOH A 25 174 174 HOH HOH . C 3 HOH A 26 175 175 HOH HOH . C 3 HOH A 27 176 176 HOH HOH . C 3 HOH A 28 177 177 HOH HOH . C 3 HOH A 29 178 178 HOH HOH . C 3 HOH A 30 179 179 HOH HOH . C 3 HOH A 31 180 180 HOH HOH . C 3 HOH A 32 181 181 HOH HOH . C 3 HOH A 33 182 182 HOH HOH . C 3 HOH A 34 183 183 HOH HOH . C 3 HOH A 35 184 184 HOH HOH . C 3 HOH A 36 185 185 HOH HOH . C 3 HOH A 37 186 186 HOH HOH . C 3 HOH A 38 187 187 HOH HOH . C 3 HOH A 39 188 188 HOH HOH . C 3 HOH A 40 189 189 HOH HOH . C 3 HOH A 41 190 190 HOH HOH . C 3 HOH A 42 191 191 HOH HOH . C 3 HOH A 43 192 192 HOH HOH . C 3 HOH A 44 193 193 HOH HOH . C 3 HOH A 45 194 194 HOH HOH . C 3 HOH A 46 195 195 HOH HOH . C 3 HOH A 47 196 196 HOH HOH . C 3 HOH A 48 197 197 HOH HOH . C 3 HOH A 49 198 198 HOH HOH . C 3 HOH A 50 199 199 HOH HOH . C 3 HOH A 51 200 200 HOH HOH . C 3 HOH A 52 201 201 HOH HOH . C 3 HOH A 53 202 202 HOH HOH . C 3 HOH A 54 203 203 HOH HOH . C 3 HOH A 55 204 204 HOH HOH . C 3 HOH A 56 205 205 HOH HOH . C 3 HOH A 57 206 206 HOH HOH . C 3 HOH A 58 207 207 HOH HOH . C 3 HOH A 59 208 208 HOH HOH . C 3 HOH A 60 209 209 HOH HOH . C 3 HOH A 61 210 210 HOH HOH . C 3 HOH A 62 211 211 HOH HOH . C 3 HOH A 63 212 212 HOH HOH . C 3 HOH A 64 213 213 HOH HOH . C 3 HOH A 65 214 214 HOH HOH . C 3 HOH A 66 215 215 HOH HOH . C 3 HOH A 67 216 216 HOH HOH . C 3 HOH A 68 217 217 HOH HOH . C 3 HOH A 69 218 218 HOH HOH . C 3 HOH A 70 219 219 HOH HOH . C 3 HOH A 71 220 220 HOH HOH . C 3 HOH A 72 221 221 HOH HOH . C 3 HOH A 73 222 222 HOH HOH . C 3 HOH A 74 223 223 HOH HOH . C 3 HOH A 75 224 224 HOH HOH . C 3 HOH A 76 225 225 HOH HOH . C 3 HOH A 77 226 226 HOH HOH . C 3 HOH A 78 227 227 HOH HOH . C 3 HOH A 79 228 228 HOH HOH . C 3 HOH A 80 229 229 HOH HOH . C 3 HOH A 81 230 230 HOH HOH . C 3 HOH A 82 231 231 HOH HOH . C 3 HOH A 83 232 232 HOH HOH . C 3 HOH A 84 233 233 HOH HOH . C 3 HOH A 85 234 234 HOH HOH . C 3 HOH A 86 235 235 HOH HOH . C 3 HOH A 87 236 236 HOH HOH . C 3 HOH A 88 237 237 HOH HOH . C 3 HOH A 89 238 238 HOH HOH . C 3 HOH A 90 239 239 HOH HOH . C 3 HOH A 91 240 240 HOH HOH . C 3 HOH A 92 241 241 HOH HOH . C 3 HOH A 93 242 242 HOH HOH . C 3 HOH A 94 243 243 HOH HOH . C 3 HOH A 95 244 244 HOH HOH . C 3 HOH A 96 245 245 HOH HOH . C 3 HOH A 97 246 246 HOH HOH . C 3 HOH A 98 247 247 HOH HOH . C 3 HOH A 99 248 248 HOH HOH . C 3 HOH A 100 249 249 HOH HOH . C 3 HOH A 101 250 250 HOH HOH . C 3 HOH A 102 251 251 HOH HOH . C 3 HOH A 103 252 252 HOH HOH . C 3 HOH A 104 253 253 HOH HOH . C 3 HOH A 105 254 254 HOH HOH . C 3 HOH A 106 255 255 HOH HOH . C 3 HOH A 107 256 256 HOH HOH . C 3 HOH A 108 257 257 HOH HOH . C 3 HOH A 109 258 258 HOH HOH . C 3 HOH A 110 259 259 HOH HOH . C 3 HOH A 111 260 260 HOH HOH . C 3 HOH A 112 261 261 HOH HOH . C 3 HOH A 113 262 262 HOH HOH . C 3 HOH A 114 263 263 HOH HOH . C 3 HOH A 115 264 264 HOH HOH . C 3 HOH A 116 265 265 HOH HOH . C 3 HOH A 117 266 266 HOH HOH . C 3 HOH A 118 267 267 HOH HOH . C 3 HOH A 119 268 268 HOH HOH . C 3 HOH A 120 269 269 HOH HOH . C 3 HOH A 121 270 270 HOH HOH . C 3 HOH A 122 271 271 HOH HOH . C 3 HOH A 123 272 272 HOH HOH . C 3 HOH A 124 273 273 HOH HOH . C 3 HOH A 125 274 274 HOH HOH . C 3 HOH A 126 275 275 HOH HOH . C 3 HOH A 127 276 276 HOH HOH . C 3 HOH A 128 277 277 HOH HOH . C 3 HOH A 129 278 278 HOH HOH . C 3 HOH A 130 279 279 HOH HOH . C 3 HOH A 131 280 280 HOH HOH . C 3 HOH A 132 281 281 HOH HOH . C 3 HOH A 133 282 282 HOH HOH . C 3 HOH A 134 283 283 HOH HOH . C 3 HOH A 135 284 284 HOH HOH . C 3 HOH A 136 285 285 HOH HOH . C 3 HOH A 137 286 286 HOH HOH . C 3 HOH A 138 287 287 HOH HOH . C 3 HOH A 139 288 288 HOH HOH . C 3 HOH A 140 289 289 HOH HOH . C 3 HOH A 141 290 290 HOH HOH . C 3 HOH A 142 291 291 HOH HOH . C 3 HOH A 143 292 292 HOH HOH . C 3 HOH A 144 293 293 HOH HOH . C 3 HOH A 145 294 294 HOH HOH . C 3 HOH A 146 295 295 HOH HOH . C 3 HOH A 147 296 296 HOH HOH . C 3 HOH A 148 297 297 HOH HOH . C 3 HOH A 149 298 298 HOH HOH . C 3 HOH A 150 299 299 HOH HOH . C 3 HOH A 151 300 300 HOH HOH . C 3 HOH A 152 301 301 HOH HOH . C 3 HOH A 153 302 302 HOH HOH . C 3 HOH A 154 303 303 HOH HOH . C 3 HOH A 155 304 304 HOH HOH . C 3 HOH A 156 305 305 HOH HOH . C 3 HOH A 157 306 306 HOH HOH . C 3 HOH A 158 307 307 HOH HOH . C 3 HOH A 159 308 308 HOH HOH . C 3 HOH A 160 309 309 HOH HOH . C 3 HOH A 161 310 310 HOH HOH . C 3 HOH A 162 311 311 HOH HOH . C 3 HOH A 163 312 312 HOH HOH . C 3 HOH A 164 313 313 HOH HOH . C 3 HOH A 165 314 314 HOH HOH . C 3 HOH A 166 315 315 HOH HOH . C 3 HOH A 167 316 316 HOH HOH . C 3 HOH A 168 317 317 HOH HOH . C 3 HOH A 169 318 318 HOH HOH . C 3 HOH A 170 319 319 HOH HOH . C 3 HOH A 171 320 320 HOH HOH . C 3 HOH A 172 321 321 HOH HOH . C 3 HOH A 173 322 322 HOH HOH . C 3 HOH A 174 323 323 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 24.778 13.205 82.611 1 8.38 ? N1 FMN 149 A 1 HETATM 2 C C2 FMN . . . B 2 23.657 13.821 82.826 1 9.09 ? C2 FMN 149 A 1 HETATM 3 O O2 FMN . . . B 2 23.648 14.419 84.002 1 9.43 ? O2 FMN 149 A 1 HETATM 4 N N3 FMN . . . B 2 22.527 13.971 82.104 1 9.53 ? N3 FMN 149 A 1 HETATM 5 C C4 FMN . . . B 2 22.592 13.357 80.858 1 9.22 ? C4 FMN 149 A 1 HETATM 6 O O4 FMN . . . B 2 21.516 13.49 80.188 1 10.64 ? O4 FMN 149 A 1 HETATM 7 C C4A FMN . . . B 2 23.665 12.572 80.44 1 8.75 ? C4A FMN 149 A 1 HETATM 8 N N5 FMN . . . B 2 23.663 12.035 79.285 1 9.87 ? N5 FMN 149 A 1 HETATM 9 C C5A FMN . . . B 2 24.784 11.396 78.951 1 9.32 ? C5A FMN 149 A 1 HETATM 10 C C6 FMN . . . B 2 24.992 10.942 77.651 1 9.8 ? C6 FMN 149 A 1 HETATM 11 C C7 FMN . . . B 2 26.134 10.358 77.136 1 9.74 ? C7 FMN 149 A 1 HETATM 12 C C7M FMN . . . B 2 26.285 9.853 75.699 1 12.83 ? C7M FMN 149 A 1 HETATM 13 C C8 FMN . . . B 2 27.193 10.226 78.017 1 9.79 ? C8 FMN 149 A 1 HETATM 14 C C8M FMN . . . B 2 28.445 9.566 77.567 1 11.56 ? C8M FMN 149 A 1 HETATM 15 C C9 FMN . . . B 2 27.083 10.59 79.349 1 9.96 ? C9 FMN 149 A 1 HETATM 16 C C9A FMN . . . B 2 25.895 11.23 79.745 1 9.37 ? C9A FMN 149 A 1 HETATM 17 N N10 FMN . . . B 2 25.793 11.81 81.043 1 8.6 ? N10 FMN 149 A 1 HETATM 18 C C10 FMN . . . B 2 24.699 12.594 81.448 1 8.93 ? C10 FMN 149 A 1 HETATM 19 C C1' FMN . . . B 2 26.96 11.714 82.031 1 9.04 ? C1' FMN 149 A 1 HETATM 20 C C2' FMN . . . B 2 26.948 10.334 82.733 1 8.51 ? C2' FMN 149 A 1 HETATM 21 O O2' FMN . . . B 2 25.986 10.293 83.72 1 8.6 ? O2' FMN 149 A 1 HETATM 22 C C3' FMN . . . B 2 28.399 10.239 83.408 1 10.01 ? C3' FMN 149 A 1 HETATM 23 O O3' FMN . . . B 2 29.287 9.744 82.348 1 12.56 ? O3' FMN 149 A 1 HETATM 24 C C4' FMN . . . B 2 28.387 9.348 84.596 1 9.25 ? C4' FMN 149 A 1 HETATM 25 O O4' FMN . . . B 2 29.685 9.448 85.223 1 11.12 ? O4' FMN 149 A 1 HETATM 26 C C5' FMN . . . B 2 28.185 7.894 84.297 1 9.92 ? C5' FMN 149 A 1 HETATM 27 O O5' FMN . . . B 2 28.03 7.185 85.582 1 9.29 ? O5' FMN 149 A 1 HETATM 28 P P FMN . . . B 2 28.055 5.612 85.587 1 9.91 ? P FMN 149 A 1 HETATM 29 O O1P FMN . . . B 2 27.691 5.264 87.065 1 9.75 ? O1P FMN 149 A 1 HETATM 30 O O2P FMN . . . B 2 29.436 5.163 85.206 1 11.21 ? O2P FMN 149 A 1 HETATM 31 O O3P FMN . . . B 2 26.996 5.076 84.646 1 10.36 ? O3P FMN 149 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #