data_1JAH
#
_model_server_result.job_id            0wXLsKBINIn7uGMaWuCeWQ 
_model_server_result.datetime_utc      '2024-10-12 09:18:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jah 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":167}' 
#
_entry.id    1JAH 
#
_exptl.entry_id    1JAH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              521.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1JAH 
_cell.length_a            40.1 
_cell.length_b            40.1 
_cell.length_c            160.64 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JAH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc3 C O2G GCP . A GCP 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc4 C O2B GCP . A GCP 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc5 B MG MG . A MG 168 1_555 D O HOH . A HOH 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc6 B MG MG . A MG 168 1_555 D O HOH . A HOH 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
#
_chem_comp.formula           'C11 H18 N5 O13 P3' 
_chem_comp.formula_weight    521.208 
_chem_comp.id                GCP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GCP doub 83 n n 
PG O2G GCP sing 84 n n 
PG O3G GCP sing 85 n n 
PG C3B GCP sing 86 n n 
O2G HOG2 GCP sing 87 n n 
O3G HOG3 GCP sing 88 n n 
C3B PB GCP sing 89 n n 
C3B H3B1 GCP sing 90 n n 
C3B H3B2 GCP sing 91 n n 
PB O1B GCP doub 92 n n 
PB O2B GCP sing 93 n n 
PB O3A GCP sing 94 n n 
O2B HOB2 GCP sing 95 n n 
O3A PA GCP sing 96 n n 
PA O1A GCP doub 97 n n 
PA O2A GCP sing 98 n n 
PA O5' GCP sing 99 n n 
O2A HOA2 GCP sing 100 n n 
O5' C5' GCP sing 101 n n 
C5' C4' GCP sing 102 n n 
C5' "H5'2" GCP sing 103 n n 
C5' "H5'1" GCP sing 104 n n 
C4' O4' GCP sing 105 n n 
C4' C3' GCP sing 106 n n 
C4' H4' GCP sing 107 n n 
O4' C1' GCP sing 108 n n 
C3' O3' GCP sing 109 n n 
C3' C2' GCP sing 110 n n 
C3' H3' GCP sing 111 n n 
O3' HO3' GCP sing 112 n n 
C2' O2' GCP sing 113 n n 
C2' C1' GCP sing 114 n n 
C2' H2' GCP sing 115 n n 
O2' HO2' GCP sing 116 n n 
C1' N9 GCP sing 117 n n 
C1' H1' GCP sing 118 n n 
N9 C8 GCP sing 119 n y 
N9 C4 GCP sing 120 n y 
C8 N7 GCP doub 121 n y 
C8 H8 GCP sing 122 n n 
N7 C5 GCP sing 123 n y 
C5 C6 GCP sing 124 n y 
C5 C4 GCP doub 125 n y 
C6 O6 GCP doub 126 n n 
C6 N1 GCP sing 127 n y 
N1 C2 GCP sing 128 n y 
N1 HN1 GCP sing 129 n n 
C2 N2 GCP sing 130 n n 
C2 N3 GCP doub 131 n y 
N2 HN21 GCP sing 132 n n 
N2 HN22 GCP sing 133 n n 
N3 C4 GCP sing 134 n y 
#
_atom_sites.entry_id                     1JAH 
_atom_sites.fract_transf_matrix[1][1]    0.024938 
_atom_sites.fract_transf_matrix[1][2]    0.014398 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028796 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006225 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 168 168 MG MG . 
C 3 GCP A 1 167 167 GCP GCP . 
D 4 HOH A 1 169 169 HOH HOH . 
D 4 HOH A 2 170 170 HOH HOH . 
D 4 HOH A 3 174 174 HOH HOH . 
D 4 HOH A 4 175 175 HOH HOH . 
D 4 HOH A 5 176 176 HOH HOH . 
D 4 HOH A 6 177 177 HOH HOH . 
D 4 HOH A 7 178 178 HOH HOH . 
D 4 HOH A 8 180 180 HOH HOH . 
D 4 HOH A 9 182 182 HOH HOH . 
D 4 HOH A 10 185 185 HOH HOH . 
D 4 HOH A 11 186 186 HOH HOH . 
D 4 HOH A 12 187 187 HOH HOH . 
D 4 HOH A 13 188 188 HOH HOH . 
D 4 HOH A 14 191 191 HOH HOH . 
D 4 HOH A 15 192 192 HOH HOH . 
D 4 HOH A 16 194 194 HOH HOH . 
D 4 HOH A 17 195 195 HOH HOH . 
D 4 HOH A 18 196 196 HOH HOH . 
D 4 HOH A 19 197 197 HOH HOH . 
D 4 HOH A 20 204 204 HOH HOH . 
D 4 HOH A 21 205 205 HOH HOH . 
D 4 HOH A 22 207 207 HOH HOH . 
D 4 HOH A 23 208 208 HOH HOH . 
D 4 HOH A 24 209 209 HOH HOH . 
D 4 HOH A 25 211 211 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GCP . . . C 3 4.844 31.984 22.055 1 11.07 ? PG GCP 167 A 1 
HETATM 2 O O1G GCP . . . C 3 4.492 32.516 23.382 1 11.24 ? O1G GCP 167 A 1 
HETATM 3 O O2G GCP . . . C 3 3.937 32.435 21.03 1 12.58 ? O2G GCP 167 A 1 
HETATM 4 O O3G GCP . . . C 3 4.569 30.469 22.147 1 13.13 ? O3G GCP 167 A 1 
HETATM 5 C C3B GCP . . . C 3 6.492 32.171 21.636 1 10.19 ? C3B GCP 167 A 1 
HETATM 6 P PB GCP . . . C 3 7.125 31.753 20.126 1 8.64 ? PB GCP 167 A 1 
HETATM 7 O O1B GCP . . . C 3 7.334 30.301 19.978 1 7.05 ? O1B GCP 167 A 1 
HETATM 8 O O2B GCP . . . C 3 6.379 32.263 19.046 1 6.93 ? O2B GCP 167 A 1 
HETATM 9 O O3A GCP . . . C 3 8.547 32.421 19.986 1 8.97 ? O3A GCP 167 A 1 
HETATM 10 P PA GCP . . . C 3 9.096 33.887 19.529 1 8.8 ? PA GCP 167 A 1 
HETATM 11 O O1A GCP . . . C 3 9.119 34.014 18.051 1 5.16 ? O1A GCP 167 A 1 
HETATM 12 O O2A GCP . . . C 3 8.368 34.917 20.271 1 8.34 ? O2A GCP 167 A 1 
HETATM 13 O O5' GCP . . . C 3 10.591 33.808 20.051 1 8.3 ? O5' GCP 167 A 1 
HETATM 14 C C5' GCP . . . C 3 10.915 33.452 21.394 1 10.74 ? C5' GCP 167 A 1 
HETATM 15 C C4' GCP . . . C 3 12.271 33.958 21.719 1 11.85 ? C4' GCP 167 A 1 
HETATM 16 O O4' GCP . . . C 3 13.296 33.161 21.033 1 9.98 ? O4' GCP 167 A 1 
HETATM 17 C C3' GCP . . . C 3 12.492 35.424 21.269 1 13.59 ? C3' GCP 167 A 1 
HETATM 18 O O3' GCP . . . C 3 13.38 36.086 22.165 1 16.02 ? O3' GCP 167 A 1 
HETATM 19 C C2' GCP . . . C 3 13.134 35.248 19.886 1 11.69 ? C2' GCP 167 A 1 
HETATM 20 O O2' GCP . . . C 3 13.936 36.408 19.52 1 14.77 ? O2' GCP 167 A 1 
HETATM 21 C C1' GCP . . . C 3 14.017 34.002 20.112 1 10.18 ? C1' GCP 167 A 1 
HETATM 22 N N9 GCP . . . C 3 14.25 33.285 18.893 1 9.04 ? N9 GCP 167 A 1 
HETATM 23 C C8 GCP . . . C 3 13.375 32.827 18.026 1 8.19 ? C8 GCP 167 A 1 
HETATM 24 N N7 GCP . . . C 3 13.874 32.364 16.958 1 11.26 ? N7 GCP 167 A 1 
HETATM 25 C C5 GCP . . . C 3 15.196 32.305 17.21 1 10.38 ? C5 GCP 167 A 1 
HETATM 26 C C6 GCP . . . C 3 16.257 31.789 16.448 1 9.8 ? C6 GCP 167 A 1 
HETATM 27 O O6 GCP . . . C 3 16.258 31.172 15.374 1 10.24 ? O6 GCP 167 A 1 
HETATM 28 N N1 GCP . . . C 3 17.457 32.079 17.022 1 9.78 ? N1 GCP 167 A 1 
HETATM 29 C C2 GCP . . . C 3 17.645 32.666 18.24 1 10.8 ? C2 GCP 167 A 1 
HETATM 30 N N2 GCP . . . C 3 18.902 33.074 18.47 1 9.01 ? N2 GCP 167 A 1 
HETATM 31 N N3 GCP . . . C 3 16.634 33.033 19.021 1 9.71 ? N3 GCP 167 A 1 
HETATM 32 C C4 GCP . . . C 3 15.452 32.89 18.407 1 10.63 ? C4 GCP 167 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#