data_1JAO # _model_server_result.job_id CcoWUeBLgy_1jCeW5V8rXA _model_server_result.datetime_utc '2025-03-06 09:21:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 1JAO # _exptl.entry_id 1JAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-2-benzyl-3-sulfanylpropanoyl]-L-alanylglycinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JAO _cell.length_a 33.24 _cell.length_b 69.2 _cell.length_c 72.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B S' 0D3 . A 0D3 1 1_555 F ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc2 A O ASP 58 A ASP 137 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc3 A NE2 HIS 68 A HIS 147 1_555 E ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 A OD2 ASP 70 A ASP 149 1_555 E ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? metalc ? metalc5 A OD1 ASP 75 A ASP 154 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 A O GLY 76 A GLY 155 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc7 A O ASN 78 A ASN 157 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc8 A O ILE 80 A ILE 159 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc9 A NE2 HIS 83 A HIS 162 1_555 E ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc10 A O GLY 90 A GLY 169 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc11 A O GLY 92 A GLY 171 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc12 A OD1 ASP 94 A ASP 173 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc13 A ND1 HIS 96 A HIS 175 1_555 E ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc14 A OD2 ASP 98 A ASP 177 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc15 A OE2 GLU 101 A GLU 180 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc16 A NE2 HIS 118 A HIS 197 1_555 F ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc17 A NE2 HIS 122 A HIS 201 1_555 F ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc18 A NE2 HIS 128 A HIS 207 1_555 F ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc19 C CA CA . A CA 996 1_555 G O HOH . A HOH 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? # _chem_comp.formula 'C15 H21 N3 O3 S' _chem_comp.formula_weight 323.411 _chem_comp.id 0D3 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-2-benzyl-3-sulfanylpropanoyl]-L-alanylglycinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 0D3 doub 1 n n C1 C2 0D3 sing 2 n n C2 C3 0D3 sing 3 n n C2 C' 0D3 sing 4 n n C2 H2 0D3 sing 5 n n C3 C1' 0D3 sing 6 n n C3 H31 0D3 sing 7 n n C3 H32 0D3 sing 8 n n C1' C2' 0D3 doub 9 n y C1' C6' 0D3 sing 10 n y C2' C3' 0D3 sing 11 n y C2' H2' 0D3 sing 12 n n C3' C4' 0D3 doub 13 n y C3' H3' 0D3 sing 14 n n C4' C5' 0D3 sing 15 n y C4' H4' 0D3 sing 16 n n C5' C6' 0D3 doub 17 n y C5' H5' 0D3 sing 18 n n C6' H6' 0D3 sing 19 n n C' S' 0D3 sing 20 n n C' "H'1" 0D3 sing 21 n n C' "H'2" 0D3 sing 22 n n S' HS' 0D3 sing 23 n n N CA 0D3 sing 24 n n N H 0D3 sing 25 n n CA C 0D3 sing 26 n n CA CB 0D3 sing 27 n n CA HA 0D3 sing 28 n n C O 0D3 doub 29 n n CB HB1 0D3 sing 30 n n CB HB2 0D3 sing 31 n n CB HB3 0D3 sing 32 n n N1 CA1 0D3 sing 33 n n N1 H1 0D3 sing 34 n n CA1 C4 0D3 sing 35 n n CA1 HA2 0D3 sing 36 n n CA1 HA3 0D3 sing 37 n n C4 O2 0D3 doub 38 n n N2 HN1 0D3 sing 39 n n N2 HN2 0D3 sing 40 n n C1 N 0D3 sing 41 n n C N1 0D3 sing 42 n n C4 N2 0D3 sing 43 n n # _atom_sites.entry_id 1JAO _atom_sites.fract_transf_matrix[1][1] 0.030084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0D3 A 1 1 1 0D3 BTP . C 3 CA A 1 996 996 CA CA . D 3 CA A 1 997 997 CA CA . E 4 ZN A 1 998 998 ZN ZN . F 4 ZN A 1 999 999 ZN ZN . G 5 HOH A 1 1000 1000 HOH HOH . G 5 HOH A 2 1001 1001 HOH HOH . G 5 HOH A 3 1002 1002 HOH HOH . G 5 HOH A 4 1003 1003 HOH HOH . G 5 HOH A 5 1004 1004 HOH HOH . G 5 HOH A 6 1005 1005 HOH HOH . G 5 HOH A 7 1006 1006 HOH HOH . G 5 HOH A 8 1007 1007 HOH HOH . G 5 HOH A 9 1008 1008 HOH HOH . G 5 HOH A 10 1009 1009 HOH HOH . G 5 HOH A 11 1010 1010 HOH HOH . G 5 HOH A 12 1011 1011 HOH HOH . G 5 HOH A 13 1012 1012 HOH HOH . G 5 HOH A 14 1013 1013 HOH HOH . G 5 HOH A 15 1014 1014 HOH HOH . G 5 HOH A 16 1015 1015 HOH HOH . G 5 HOH A 17 1016 1016 HOH HOH . G 5 HOH A 18 1017 1017 HOH HOH . G 5 HOH A 19 1018 1018 HOH HOH . G 5 HOH A 20 1019 1019 HOH HOH . G 5 HOH A 21 1020 1020 HOH HOH . G 5 HOH A 22 1021 1021 HOH HOH . G 5 HOH A 23 1022 1022 HOH HOH . G 5 HOH A 24 1023 1023 HOH HOH . G 5 HOH A 25 1024 1024 HOH HOH . G 5 HOH A 26 1025 1025 HOH HOH . G 5 HOH A 27 1026 1026 HOH HOH . G 5 HOH A 28 1027 1027 HOH HOH . G 5 HOH A 29 1028 1028 HOH HOH . G 5 HOH A 30 1029 1029 HOH HOH . G 5 HOH A 31 1030 1030 HOH HOH . G 5 HOH A 32 1031 1031 HOH HOH . G 5 HOH A 33 1032 1032 HOH HOH . G 5 HOH A 34 1033 1033 HOH HOH . G 5 HOH A 35 1034 1034 HOH HOH . G 5 HOH A 36 1035 1035 HOH HOH . G 5 HOH A 37 1036 1036 HOH HOH . G 5 HOH A 38 1037 1037 HOH HOH . G 5 HOH A 39 1038 1038 HOH HOH . G 5 HOH A 40 1039 1039 HOH HOH . G 5 HOH A 41 1040 1040 HOH HOH . G 5 HOH A 42 1041 1041 HOH HOH . G 5 HOH A 43 1042 1042 HOH HOH . G 5 HOH A 44 1043 1043 HOH HOH . G 5 HOH A 45 1044 1044 HOH HOH . G 5 HOH A 46 1045 1045 HOH HOH . G 5 HOH A 47 1046 1046 HOH HOH . G 5 HOH A 48 1047 1047 HOH HOH . G 5 HOH A 49 1048 1048 HOH HOH . G 5 HOH A 50 1049 1049 HOH HOH . G 5 HOH A 51 1050 1050 HOH HOH . G 5 HOH A 52 1051 1051 HOH HOH . G 5 HOH A 53 1052 1052 HOH HOH . G 5 HOH A 54 1053 1053 HOH HOH . G 5 HOH A 55 1054 1054 HOH HOH . G 5 HOH A 56 1055 1055 HOH HOH . G 5 HOH A 57 1056 1056 HOH HOH . G 5 HOH A 58 1057 1057 HOH HOH . G 5 HOH A 59 1058 1058 HOH HOH . G 5 HOH A 60 1059 1059 HOH HOH . G 5 HOH A 61 1060 1060 HOH HOH . G 5 HOH A 62 1061 1061 HOH HOH . G 5 HOH A 63 1062 1062 HOH HOH . G 5 HOH A 64 1063 1063 HOH HOH . G 5 HOH A 65 1064 1064 HOH HOH . G 5 HOH A 66 1065 1065 HOH HOH . G 5 HOH A 67 1066 1066 HOH HOH . G 5 HOH A 68 1067 1067 HOH HOH . G 5 HOH A 69 1068 1068 HOH HOH . G 5 HOH A 70 1069 1069 HOH HOH . G 5 HOH A 71 1070 1070 HOH HOH . G 5 HOH A 72 1071 1071 HOH HOH . G 5 HOH A 73 1072 1072 HOH HOH . G 5 HOH A 74 1073 1073 HOH HOH . G 5 HOH A 75 1074 1074 HOH HOH . G 5 HOH A 76 1075 1075 HOH HOH . G 5 HOH A 77 1076 1076 HOH HOH . G 5 HOH A 78 1077 1077 HOH HOH . G 5 HOH A 79 1078 1078 HOH HOH . G 5 HOH A 80 1079 1079 HOH HOH . G 5 HOH A 81 1080 1080 HOH HOH . G 5 HOH A 82 1081 1081 HOH HOH . G 5 HOH A 83 1082 1082 HOH HOH . G 5 HOH A 84 1083 1083 HOH HOH . G 5 HOH A 85 1084 1084 HOH HOH . G 5 HOH A 86 1085 1085 HOH HOH . G 5 HOH A 87 1086 1086 HOH HOH . G 5 HOH A 88 1087 1087 HOH HOH . G 5 HOH A 89 1088 1088 HOH HOH . G 5 HOH A 90 1089 1089 HOH HOH . G 5 HOH A 91 1090 1090 HOH HOH . G 5 HOH A 92 1091 1091 HOH HOH . G 5 HOH A 93 1092 1092 HOH HOH . G 5 HOH A 94 1093 1093 HOH HOH . G 5 HOH A 95 1094 1094 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0D3 . . . B 2 28.141 59.331 50.41 1 21.31 ? C1 0D3 1 A 1 HETATM 2 O O1 0D3 . . . B 2 27.938 60.417 49.862 1 21.1 ? O1 0D3 1 A 1 HETATM 3 C C2 0D3 . . . B 2 27.055 58.665 51.252 1 19.57 ? C2 0D3 1 A 1 HETATM 4 C C3 0D3 . . . B 2 25.822 58.437 50.352 1 20.02 ? C3 0D3 1 A 1 HETATM 5 C C1' 0D3 . . . B 2 25.818 57.113 49.594 1 18.83 ? C1' 0D3 1 A 1 HETATM 6 C C2' 0D3 . . . B 2 26.58 56.032 50.017 1 19.64 ? C2' 0D3 1 A 1 HETATM 7 C C3' 0D3 . . . B 2 26.516 54.812 49.374 1 16.75 ? C3' 0D3 1 A 1 HETATM 8 C C4' 0D3 . . . B 2 25.692 54.665 48.297 1 19.01 ? C4' 0D3 1 A 1 HETATM 9 C C5' 0D3 . . . B 2 24.926 55.729 47.847 1 19.78 ? C5' 0D3 1 A 1 HETATM 10 C C6' 0D3 . . . B 2 24.997 56.942 48.496 1 20.75 ? C6' 0D3 1 A 1 HETATM 11 C C' 0D3 . . . B 2 26.786 59.546 52.496 1 17.05 ? C' 0D3 1 A 1 HETATM 12 S S' 0D3 . . . B 2 25.492 58.918 53.632 1 12.96 ? S' 0D3 1 A 1 HETATM 13 N N 0D3 . . . B 2 29.3 58.681 50.318 1 23.4 ? N 0D3 1 A 1 HETATM 14 C CA 0D3 . . . B 2 30.408 59.227 49.553 1 23.92 ? CA 0D3 1 A 1 HETATM 15 C C 0D3 . . . B 2 30.474 58.642 48.161 1 24.95 ? C 0D3 1 A 1 HETATM 16 O O 0D3 . . . B 2 30.24 57.456 47.969 1 25.58 ? O 0D3 1 A 1 HETATM 17 C CB 0D3 . . . B 2 31.684 59.013 50.274 1 25.55 ? CB 0D3 1 A 1 HETATM 18 N N1 0D3 . . . B 2 30.888 59.478 47.217 1 25.46 ? N1 0D3 1 A 1 HETATM 19 C CA1 0D3 . . . B 2 30.95 59.092 45.827 1 28.2 ? CA1 0D3 1 A 1 HETATM 20 C C4 0D3 . . . B 2 32.172 58.343 45.357 1 30.01 ? C4 0D3 1 A 1 HETATM 21 O O2 0D3 . . . B 2 32.781 58.798 44.383 1 30.77 ? O2 0D3 1 A 1 HETATM 22 N N2 0D3 . . . B 2 32.163 57.038 45.644 1 31.14 ? N2 0D3 1 A 1 HETATM 23 H H 0D3 . . . B 2 29.347 57.822 50.807 1 15 ? H 0D3 1 A 1 HETATM 24 H H1 0D3 . . . B 2 31.177 60.375 47.487 1 15 ? H1 0D3 1 A 1 HETATM 25 H HN1 0D3 . . . B 2 31.389 56.631 46.151 1 15 ? HN1 0D3 1 A 1 HETATM 26 H HN2 0D3 . . . B 2 32.968 56.545 45.298 1 15 ? HN2 0D3 1 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #