data_1JAP
#
_model_server_result.job_id            yzTTGpr6Rw1VtPoVTWoA_g 
_model_server_result.datetime_utc      '2024-11-15 12:58:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jap 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":997}' 
#
_entry.id    1JAP 
#
_exptl.entry_id    1JAP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1JAP 
_cell.length_a            33.09 
_cell.length_b            69.37 
_cell.length_c            72.48 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JAP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C GLY 3 I GLY 3 1_555 B N HOA 4 I HOA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
metalc ? metalc1 A O ASP 58 A ASP 137 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc2 A NE2 HIS 68 A HIS 147 1_555 E ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc3 A OD2 ASP 70 A ASP 149 1_555 E ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? 
metalc ? metalc4 A OD1 ASP 75 A ASP 154 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc5 A O GLY 76 A GLY 155 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc6 A O ASN 78 A ASN 157 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc7 A O ILE 80 A ILE 159 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc8 A NE2 HIS 83 A HIS 162 1_555 E ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc9 A O GLY 90 A GLY 169 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc10 A O GLY 92 A GLY 171 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc11 A OD1 ASP 94 A ASP 173 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc12 A ND1 HIS 96 A HIS 175 1_555 E ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc13 A OD2 ASP 98 A ASP 177 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc14 A OE2 GLU 101 A GLU 180 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc15 A NE2 HIS 118 A HIS 197 1_555 F ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc16 A NE2 HIS 122 A HIS 201 1_555 F ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc17 A NE2 HIS 128 A HIS 207 1_555 F ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc18 C CA CA . A CA 996 1_555 G O HOH . A HOH 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc19 C CA CA . A CA 996 1_555 G O HOH . A HOH 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc20 F ZN ZN . A ZN 999 1_555 B O GLY 3 I GLY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc21 F ZN ZN . A ZN 999 1_555 B O HOA 4 I HOA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1JAP 
_atom_sites.fract_transf_matrix[1][1]    0.030221 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014415 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013797 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 996 996 CA CA . 
D 3 CA A 1 997 997 CA CA . 
E 4 ZN A 1 998 998 ZN ZN . 
F 4 ZN A 1 999 999 ZN ZN . 
G 5 HOH A 1 1000 1 HOH HOH . 
G 5 HOH A 2 1001 2 HOH HOH . 
G 5 HOH A 3 1002 3 HOH HOH . 
G 5 HOH A 4 1003 4 HOH HOH . 
G 5 HOH A 5 1004 5 HOH HOH . 
G 5 HOH A 6 1005 6 HOH HOH . 
G 5 HOH A 7 1006 7 HOH HOH . 
G 5 HOH A 8 1007 8 HOH HOH . 
G 5 HOH A 9 1008 9 HOH HOH . 
G 5 HOH A 10 1009 10 HOH HOH . 
G 5 HOH A 11 1010 11 HOH HOH . 
G 5 HOH A 12 1011 12 HOH HOH . 
G 5 HOH A 13 1012 13 HOH HOH . 
G 5 HOH A 14 1013 14 HOH HOH . 
G 5 HOH A 15 1014 15 HOH HOH . 
G 5 HOH A 16 1015 16 HOH HOH . 
G 5 HOH A 17 1016 17 HOH HOH . 
G 5 HOH A 18 1017 18 HOH HOH . 
G 5 HOH A 19 1018 19 HOH HOH . 
G 5 HOH A 20 1019 20 HOH HOH . 
G 5 HOH A 21 1020 21 HOH HOH . 
G 5 HOH A 22 1021 22 HOH HOH . 
G 5 HOH A 23 1022 24 HOH HOH . 
G 5 HOH A 24 1023 26 HOH HOH . 
G 5 HOH A 25 1024 27 HOH HOH . 
G 5 HOH A 26 1025 28 HOH HOH . 
G 5 HOH A 27 1026 29 HOH HOH . 
G 5 HOH A 28 1027 30 HOH HOH . 
G 5 HOH A 29 1028 31 HOH HOH . 
G 5 HOH A 30 1029 32 HOH HOH . 
G 5 HOH A 31 1030 33 HOH HOH . 
G 5 HOH A 32 1031 34 HOH HOH . 
G 5 HOH A 33 1032 35 HOH HOH . 
G 5 HOH A 34 1033 36 HOH HOH . 
G 5 HOH A 35 1034 37 HOH HOH . 
G 5 HOH A 36 1035 38 HOH HOH . 
G 5 HOH A 37 1036 39 HOH HOH . 
G 5 HOH A 38 1037 40 HOH HOH . 
G 5 HOH A 39 1038 41 HOH HOH . 
G 5 HOH A 40 1039 42 HOH HOH . 
G 5 HOH A 41 1040 44 HOH HOH . 
G 5 HOH A 42 1041 45 HOH HOH . 
G 5 HOH A 43 1042 46 HOH HOH . 
G 5 HOH A 44 1043 47 HOH HOH . 
G 5 HOH A 45 1044 49 HOH HOH . 
G 5 HOH A 46 1045 50 HOH HOH . 
G 5 HOH A 47 1046 51 HOH HOH . 
G 5 HOH A 48 1047 52 HOH HOH . 
G 5 HOH A 49 1048 53 HOH HOH . 
G 5 HOH A 50 1049 54 HOH HOH . 
G 5 HOH A 51 1050 55 HOH HOH . 
G 5 HOH A 52 1051 56 HOH HOH . 
G 5 HOH A 53 1052 57 HOH HOH . 
G 5 HOH A 54 1053 58 HOH HOH . 
G 5 HOH A 55 1054 59 HOH HOH . 
G 5 HOH A 56 1055 60 HOH HOH . 
G 5 HOH A 57 1056 61 HOH HOH . 
G 5 HOH A 58 1057 62 HOH HOH . 
G 5 HOH A 59 1058 63 HOH HOH . 
G 5 HOH A 60 1059 64 HOH HOH . 
G 5 HOH A 61 1060 65 HOH HOH . 
G 5 HOH A 62 1061 66 HOH HOH . 
G 5 HOH A 63 1062 67 HOH HOH . 
G 5 HOH A 64 1063 68 HOH HOH . 
G 5 HOH A 65 1064 69 HOH HOH . 
G 5 HOH A 66 1065 70 HOH HOH . 
G 5 HOH A 67 1066 71 HOH HOH . 
G 5 HOH A 68 1067 72 HOH HOH . 
G 5 HOH A 69 1068 73 HOH HOH . 
G 5 HOH A 70 1069 74 HOH HOH . 
G 5 HOH A 71 1070 75 HOH HOH . 
G 5 HOH A 72 1071 76 HOH HOH . 
G 5 HOH A 73 1072 77 HOH HOH . 
G 5 HOH A 74 1073 78 HOH HOH . 
G 5 HOH A 75 1074 79 HOH HOH . 
G 5 HOH A 76 1075 80 HOH HOH . 
G 5 HOH A 77 1076 81 HOH HOH . 
G 5 HOH A 78 1077 82 HOH HOH . 
G 5 HOH A 79 1078 83 HOH HOH . 
G 5 HOH A 80 1079 84 HOH HOH . 
G 5 HOH A 81 1080 85 HOH HOH . 
G 5 HOH A 82 1081 86 HOH HOH . 
G 5 HOH A 83 1082 87 HOH HOH . 
G 5 HOH A 84 1083 88 HOH HOH . 
G 5 HOH A 85 1084 89 HOH HOH . 
G 5 HOH A 86 1085 90 HOH HOH . 
G 5 HOH A 87 1086 91 HOH HOH . 
G 5 HOH A 88 1087 92 HOH HOH . 
G 5 HOH A 89 1088 93 HOH HOH . 
G 5 HOH A 90 1089 94 HOH HOH . 
G 5 HOH A 91 1090 95 HOH HOH . 
G 5 HOH A 92 1091 96 HOH HOH . 
G 5 HOH A 93 1092 97 HOH HOH . 
G 5 HOH A 94 1093 98 HOH HOH . 
G 5 HOH A 95 1094 99 HOH HOH . 
G 5 HOH A 96 1095 100 HOH HOH . 
G 5 HOH A 97 1096 101 HOH HOH . 
G 5 HOH A 98 1097 102 HOH HOH . 
G 5 HOH A 99 1098 103 HOH HOH . 
G 5 HOH A 100 1099 104 HOH HOH . 
G 5 HOH A 101 1100 105 HOH HOH . 
G 5 HOH A 102 1101 106 HOH HOH . 
G 5 HOH A 103 1102 107 HOH HOH . 
G 5 HOH A 104 1103 108 HOH HOH . 
G 5 HOH A 105 1104 109 HOH HOH . 
G 5 HOH A 106 1105 110 HOH HOH . 
G 5 HOH A 107 1106 111 HOH HOH . 
G 5 HOH A 108 1107 112 HOH HOH . 
G 5 HOH A 109 1108 113 HOH HOH . 
G 5 HOH A 110 1109 114 HOH HOH . 
G 5 HOH A 111 1110 115 HOH HOH . 
G 5 HOH A 112 1111 116 HOH HOH . 
G 5 HOH A 113 1112 117 HOH HOH . 
G 5 HOH A 114 1113 118 HOH HOH . 
G 5 HOH A 115 1114 119 HOH HOH . 
G 5 HOH A 116 1115 120 HOH HOH . 
G 5 HOH A 117 1116 121 HOH HOH . 
G 5 HOH A 118 1117 122 HOH HOH . 
G 5 HOH A 119 1118 123 HOH HOH . 
G 5 HOH A 120 1119 124 HOH HOH . 
G 5 HOH A 121 1120 125 HOH HOH . 
G 5 HOH A 122 1121 126 HOH HOH . 
G 5 HOH A 123 1122 127 HOH HOH . 
G 5 HOH A 124 1123 129 HOH HOH . 
G 5 HOH A 125 1124 130 HOH HOH . 
G 5 HOH A 126 1125 131 HOH HOH . 
G 5 HOH A 127 1126 132 HOH HOH . 
G 5 HOH A 128 1127 133 HOH HOH . 
G 5 HOH A 129 1128 134 HOH HOH . 
G 5 HOH A 130 1129 135 HOH HOH . 
G 5 HOH A 131 1130 136 HOH HOH . 
G 5 HOH A 132 1131 137 HOH HOH . 
G 5 HOH A 133 1132 138 HOH HOH . 
G 5 HOH A 134 1133 139 HOH HOH . 
G 5 HOH A 135 1134 140 HOH HOH . 
G 5 HOH A 136 1135 141 HOH HOH . 
G 5 HOH A 137 1136 142 HOH HOH . 
G 5 HOH A 138 1137 143 HOH HOH . 
G 5 HOH A 139 1138 144 HOH HOH . 
G 5 HOH A 140 1139 145 HOH HOH . 
G 5 HOH A 141 1140 146 HOH HOH . 
G 5 HOH A 142 1141 147 HOH HOH . 
G 5 HOH A 143 1142 148 HOH HOH . 
H 5 HOH I 1 23 23 HOH HOH . 
H 5 HOH I 2 25 25 HOH HOH . 
H 5 HOH I 3 43 43 HOH HOH . 
H 5 HOH I 4 48 48 HOH HOH . 
H 5 HOH I 5 128 128 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               29.368 
_atom_site.Cartn_y               66.665 
_atom_site.Cartn_z               46.992 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        11.76 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           997 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#