data_1JB1 # _model_server_result.job_id GfAv7ZvYPUuLQP3M77IveA _model_server_result.datetime_utc '2025-03-01 06:50:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jb1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 1JB1 # _exptl.entry_id 1JB1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JB1 _cell.length_a 107.738 _cell.length_b 107.738 _cell.length_c 66.498 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 107.738 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 53.869 93.303845 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 53.869 93.303845 33.249 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 107.738 0 33.249 6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 33.249 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 24 A SER 138 1_555 A N MSE 25 A MSE 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 25 A MSE 139 1_555 A N HIS 26 A HIS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C VAL 99 A VAL 213 1_555 A N MSE 100 A MSE 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 100 A MSE 214 1_555 A N ASN 101 A ASN 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C ALA 167 A ALA 281 1_555 A N MSE 168 A MSE 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 168 A MSE 282 1_555 A N ASN 169 A ASN 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale7 A C SER 174 A SER 288 1_555 A N MSE 175 A MSE 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C MSE 175 A MSE 289 1_555 A N GLY 176 A GLY 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 266 n n P O2 PO4 sing 267 n n P O3 PO4 sing 268 n n P O4 PO4 sing 269 n n # _atom_sites.entry_id 1JB1 _atom_sites.fract_transf_matrix[1][1] 0.009282 _atom_sites.fract_transf_matrix[1][2] 0.005359 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 400 400 PO4 PO4 . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 402 HOH HOH . C 3 HOH A 3 403 403 HOH HOH . C 3 HOH A 4 404 404 HOH HOH . C 3 HOH A 5 405 405 HOH HOH . C 3 HOH A 6 406 406 HOH HOH . C 3 HOH A 7 407 407 HOH HOH . C 3 HOH A 8 408 408 HOH HOH . C 3 HOH A 9 410 410 HOH HOH . C 3 HOH A 10 411 411 HOH HOH . C 3 HOH A 11 412 412 HOH HOH . C 3 HOH A 12 413 413 HOH HOH . C 3 HOH A 13 414 414 HOH HOH . C 3 HOH A 14 415 415 HOH HOH . C 3 HOH A 15 416 416 HOH HOH . C 3 HOH A 16 417 417 HOH HOH . C 3 HOH A 17 418 418 HOH HOH . C 3 HOH A 18 419 419 HOH HOH . C 3 HOH A 19 420 420 HOH HOH . C 3 HOH A 20 421 421 HOH HOH . C 3 HOH A 21 422 422 HOH HOH . C 3 HOH A 22 423 423 HOH HOH . C 3 HOH A 23 424 424 HOH HOH . C 3 HOH A 24 425 425 HOH HOH . C 3 HOH A 25 426 426 HOH HOH . C 3 HOH A 26 427 427 HOH HOH . C 3 HOH A 27 428 428 HOH HOH . C 3 HOH A 28 429 429 HOH HOH . C 3 HOH A 29 430 430 HOH HOH . C 3 HOH A 30 431 431 HOH HOH . C 3 HOH A 31 432 432 HOH HOH . C 3 HOH A 32 433 433 HOH HOH . C 3 HOH A 33 434 434 HOH HOH . C 3 HOH A 34 435 435 HOH HOH . C 3 HOH A 35 436 436 HOH HOH . C 3 HOH A 36 437 437 HOH HOH . C 3 HOH A 37 438 438 HOH HOH . C 3 HOH A 38 439 439 HOH HOH . C 3 HOH A 39 440 440 HOH HOH . C 3 HOH A 40 441 441 HOH HOH . C 3 HOH A 41 442 442 HOH HOH . C 3 HOH A 42 443 443 HOH HOH . C 3 HOH A 43 444 444 HOH HOH . C 3 HOH A 44 445 445 HOH HOH . C 3 HOH A 45 446 446 HOH HOH . C 3 HOH A 46 447 447 HOH HOH . C 3 HOH A 47 448 448 HOH HOH . C 3 HOH A 48 449 449 HOH HOH . C 3 HOH A 49 450 450 HOH HOH . C 3 HOH A 50 451 451 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 62.012 42.648 39.162 1 74.66 ? P PO4 400 A 1 HETATM 2 O O1 PO4 . . . B 2 63.037 42.934 40.204 1 75.52 ? O1 PO4 400 A 1 HETATM 3 O O2 PO4 . . . B 2 60.689 43.16 39.614 1 73.35 ? O2 PO4 400 A 1 HETATM 4 O O3 PO4 . . . B 2 62.399 43.325 37.892 1 73.11 ? O3 PO4 400 A 1 HETATM 5 O O4 PO4 . . . B 2 61.924 41.178 38.941 1 71.72 ? O4 PO4 400 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #