data_1JBP # _model_server_result.job_id trKBJnurSUKr-s5SnbXUBw _model_server_result.datetime_utc '2024-10-13 08:21:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":382}' # _entry.id 1JBP # _exptl.entry_id 1JBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.229 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JBP _cell.length_a 73.96 _cell.length_b 76.11 _cell.length_c 81 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 9 E GLY 9 1_555 A N SEP 10 E SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C SEP 10 E SEP 10 1_555 A N GLU 11 E GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale3 A C TRP 196 E TRP 196 1_555 A N TPO 197 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C TPO 197 E TPO 197 1_555 A N LEU 198 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale5 A C VAL 337 E VAL 337 1_555 A N SEP 338 E SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale6 A C SEP 338 E SEP 338 1_555 A N ILE 339 E ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 281 n n C1 H11 OCT sing 282 n n C1 H12 OCT sing 283 n n C1 H13 OCT sing 284 n n C2 C3 OCT sing 285 n n C2 H21 OCT sing 286 n n C2 H22 OCT sing 287 n n C3 C4 OCT sing 288 n n C3 H31 OCT sing 289 n n C3 H32 OCT sing 290 n n C4 C5 OCT sing 291 n n C4 H41 OCT sing 292 n n C4 H42 OCT sing 293 n n C5 C6 OCT sing 294 n n C5 H51 OCT sing 295 n n C5 H52 OCT sing 296 n n C6 C7 OCT sing 297 n n C6 H61 OCT sing 298 n n C6 H62 OCT sing 299 n n C7 C8 OCT sing 300 n n C7 H71 OCT sing 301 n n C7 H72 OCT sing 302 n n C8 H81 OCT sing 303 n n C8 H82 OCT sing 304 n n C8 H83 OCT sing 305 n n # _atom_sites.entry_id 1JBP _atom_sites.fract_transf_matrix[1][1] 0.013521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP E 1 381 381 ADP ADP . D 4 OCT E 1 382 382 OCT OCT . E 5 HOH E 1 383 383 HOH WAT . E 5 HOH E 2 384 384 HOH WAT . E 5 HOH E 3 385 385 HOH WAT . E 5 HOH E 4 386 386 HOH WAT . E 5 HOH E 5 387 387 HOH WAT . E 5 HOH E 6 388 388 HOH WAT . E 5 HOH E 7 389 389 HOH WAT . E 5 HOH E 8 390 390 HOH WAT . E 5 HOH E 9 393 393 HOH WAT . E 5 HOH E 10 395 395 HOH WAT . E 5 HOH E 11 396 396 HOH WAT . E 5 HOH E 12 397 397 HOH WAT . E 5 HOH E 13 398 398 HOH WAT . E 5 HOH E 14 399 399 HOH WAT . E 5 HOH E 15 400 400 HOH WAT . E 5 HOH E 16 401 401 HOH WAT . E 5 HOH E 17 402 402 HOH WAT . E 5 HOH E 18 404 404 HOH WAT . E 5 HOH E 19 405 405 HOH WAT . E 5 HOH E 20 406 406 HOH WAT . E 5 HOH E 21 407 407 HOH WAT . E 5 HOH E 22 408 408 HOH WAT . E 5 HOH E 23 409 409 HOH WAT . E 5 HOH E 24 410 410 HOH WAT . E 5 HOH E 25 411 411 HOH WAT . E 5 HOH E 26 413 413 HOH WAT . E 5 HOH E 27 414 414 HOH WAT . E 5 HOH E 28 415 415 HOH WAT . E 5 HOH E 29 416 416 HOH WAT . E 5 HOH E 30 417 417 HOH WAT . E 5 HOH E 31 419 419 HOH WAT . E 5 HOH E 32 420 420 HOH WAT . E 5 HOH E 33 421 421 HOH WAT . E 5 HOH E 34 422 422 HOH WAT . E 5 HOH E 35 423 423 HOH WAT . E 5 HOH E 36 425 425 HOH WAT . E 5 HOH E 37 426 426 HOH WAT . E 5 HOH E 38 427 427 HOH WAT . E 5 HOH E 39 428 428 HOH WAT . E 5 HOH E 40 429 429 HOH WAT . E 5 HOH E 41 430 430 HOH WAT . E 5 HOH E 42 431 431 HOH WAT . E 5 HOH E 43 434 434 HOH WAT . E 5 HOH E 44 435 435 HOH WAT . E 5 HOH E 45 437 437 HOH WAT . E 5 HOH E 46 438 438 HOH WAT . E 5 HOH E 47 440 440 HOH WAT . E 5 HOH E 48 441 441 HOH WAT . E 5 HOH E 49 443 443 HOH WAT . E 5 HOH E 50 445 445 HOH WAT . E 5 HOH E 51 446 446 HOH WAT . E 5 HOH E 52 447 447 HOH WAT . E 5 HOH E 53 448 448 HOH WAT . E 5 HOH E 54 449 449 HOH WAT . E 5 HOH E 55 450 450 HOH WAT . E 5 HOH E 56 451 451 HOH WAT . E 5 HOH E 57 452 452 HOH WAT . E 5 HOH E 58 453 453 HOH WAT . E 5 HOH E 59 454 454 HOH WAT . E 5 HOH E 60 455 455 HOH WAT . E 5 HOH E 61 456 456 HOH WAT . E 5 HOH E 62 457 457 HOH WAT . E 5 HOH E 63 458 458 HOH WAT . E 5 HOH E 64 459 459 HOH WAT . E 5 HOH E 65 460 460 HOH WAT . E 5 HOH E 66 461 461 HOH WAT . E 5 HOH E 67 462 462 HOH WAT . E 5 HOH E 68 463 463 HOH WAT . E 5 HOH E 69 464 464 HOH WAT . E 5 HOH E 70 465 465 HOH WAT . E 5 HOH E 71 466 466 HOH WAT . E 5 HOH E 72 467 467 HOH WAT . E 5 HOH E 73 468 468 HOH WAT . E 5 HOH E 74 469 469 HOH WAT . E 5 HOH E 75 471 471 HOH WAT . E 5 HOH E 76 472 472 HOH WAT . E 5 HOH E 77 473 473 HOH WAT . E 5 HOH E 78 474 474 HOH WAT . E 5 HOH E 79 475 475 HOH WAT . E 5 HOH E 80 476 476 HOH WAT . E 5 HOH E 81 477 477 HOH WAT . E 5 HOH E 82 478 478 HOH WAT . E 5 HOH E 83 479 479 HOH WAT . E 5 HOH E 84 480 480 HOH WAT . E 5 HOH E 85 481 481 HOH WAT . E 5 HOH E 86 482 482 HOH WAT . E 5 HOH E 87 483 483 HOH WAT . E 5 HOH E 88 484 484 HOH WAT . E 5 HOH E 89 485 485 HOH WAT . E 5 HOH E 90 486 486 HOH WAT . E 5 HOH E 91 487 487 HOH WAT . E 5 HOH E 92 488 488 HOH WAT . E 5 HOH E 93 489 489 HOH WAT . E 5 HOH E 94 490 490 HOH WAT . E 5 HOH E 95 491 491 HOH WAT . E 5 HOH E 96 492 492 HOH WAT . E 5 HOH E 97 493 493 HOH WAT . E 5 HOH E 98 494 494 HOH WAT . E 5 HOH E 99 495 495 HOH WAT . E 5 HOH E 100 496 496 HOH WAT . E 5 HOH E 101 497 497 HOH WAT . E 5 HOH E 102 499 499 HOH WAT . E 5 HOH E 103 501 501 HOH WAT . E 5 HOH E 104 502 502 HOH WAT . E 5 HOH E 105 503 503 HOH WAT . E 5 HOH E 106 504 504 HOH WAT . E 5 HOH E 107 505 505 HOH WAT . E 5 HOH E 108 506 506 HOH WAT . E 5 HOH E 109 507 507 HOH WAT . E 5 HOH E 110 508 508 HOH WAT . E 5 HOH E 111 509 509 HOH WAT . E 5 HOH E 112 510 510 HOH WAT . E 5 HOH E 113 511 511 HOH WAT . E 5 HOH E 114 512 512 HOH WAT . E 5 HOH E 115 513 513 HOH WAT . E 5 HOH E 116 514 514 HOH WAT . E 5 HOH E 117 515 515 HOH WAT . E 5 HOH E 118 516 516 HOH WAT . E 5 HOH E 119 517 517 HOH WAT . E 5 HOH E 120 518 518 HOH WAT . E 5 HOH E 121 520 520 HOH WAT . E 5 HOH E 122 521 521 HOH WAT . E 5 HOH E 123 522 522 HOH WAT . E 5 HOH E 124 523 523 HOH WAT . E 5 HOH E 125 524 524 HOH WAT . E 5 HOH E 126 525 525 HOH WAT . E 5 HOH E 127 526 526 HOH WAT . E 5 HOH E 128 527 527 HOH WAT . E 5 HOH E 129 528 528 HOH WAT . E 5 HOH E 130 529 529 HOH WAT . E 5 HOH E 131 530 530 HOH WAT . E 5 HOH E 132 531 531 HOH WAT . E 5 HOH E 133 532 532 HOH WAT . E 5 HOH E 134 533 533 HOH WAT . E 5 HOH E 135 534 534 HOH WAT . E 5 HOH E 136 535 535 HOH WAT . E 5 HOH E 137 536 536 HOH WAT . E 5 HOH E 138 537 537 HOH WAT . E 5 HOH E 139 538 538 HOH WAT . E 5 HOH E 140 539 539 HOH WAT . E 5 HOH E 141 540 540 HOH WAT . E 5 HOH E 142 541 541 HOH WAT . E 5 HOH E 143 542 542 HOH WAT . E 5 HOH E 144 543 543 HOH WAT . E 5 HOH E 145 544 544 HOH WAT . E 5 HOH E 146 545 545 HOH WAT . E 5 HOH E 147 546 546 HOH WAT . E 5 HOH E 148 549 549 HOH WAT . E 5 HOH E 149 550 550 HOH WAT . F 5 HOH S 1 391 391 HOH WAT . F 5 HOH S 2 392 392 HOH WAT . F 5 HOH S 3 394 394 HOH WAT . F 5 HOH S 4 403 403 HOH WAT . F 5 HOH S 5 412 412 HOH WAT . F 5 HOH S 6 418 418 HOH WAT . F 5 HOH S 7 424 424 HOH WAT . F 5 HOH S 8 432 432 HOH WAT . F 5 HOH S 9 433 433 HOH WAT . F 5 HOH S 10 436 436 HOH WAT . F 5 HOH S 11 439 439 HOH WAT . F 5 HOH S 12 442 442 HOH WAT . F 5 HOH S 13 444 444 HOH WAT . F 5 HOH S 14 470 470 HOH WAT . F 5 HOH S 15 498 498 HOH WAT . F 5 HOH S 16 500 500 HOH WAT . F 5 HOH S 17 519 519 HOH WAT . F 5 HOH S 18 547 547 HOH WAT . F 5 HOH S 19 548 548 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . D 4 -1.075 -8.633 -9.868 1 39.84 ? C1 OCT 382 E 1 HETATM 2 C C2 OCT . . . D 4 -2.479 -8.288 -9.331 1 19.84 ? C2 OCT 382 E 1 HETATM 3 C C3 OCT . . . D 4 -3.395 -9.494 -9.005 1 57.85 ? C3 OCT 382 E 1 HETATM 4 C C4 OCT . . . D 4 -4.797 -9.381 -9.655 1 20.77 ? C4 OCT 382 E 1 HETATM 5 C C5 OCT . . . D 4 -5.948 -9.891 -8.771 1 51.19 ? C5 OCT 382 E 1 HETATM 6 C C6 OCT . . . D 4 -7.351 -9.454 -9.253 1 55.33 ? C6 OCT 382 E 1 HETATM 7 C C7 OCT . . . D 4 -8.504 -10.218 -8.561 1 71.69 ? C7 OCT 382 E 1 HETATM 8 C C8 OCT . . . D 4 -9.617 -10.67 -9.531 1 67.26 ? C8 OCT 382 E 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #