data_1JBZ
#
_model_server_result.job_id            Z_vzu6J_HakdO6ufSmU_TQ 
_model_server_result.datetime_utc      '2024-12-23 10:10:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jbz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":303}' 
#
_entry.id    1JBZ 
#
_exptl.entry_id    1JBZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1JBZ 
_cell.length_a            51.2 
_cell.length_b            62.374 
_cell.length_c            68.967 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JBZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 64 A PHE 64 1_555 A N1 CRO 65 A CRO 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? 
covale ? covale2 A C3 CRO 65 A CRO 66 1_555 A N VAL 66 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? 
metalc ? metalc1 A NH2 ARG 78 A ARG 80 1_555 C MG MG . A MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc2 A ND2 ASN 168 A ASN 170 1_555 B MG MG . A MG 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? 
metalc ? metalc3 A OD1 ASP 195 A ASP 197 1_555 C MG MG . A MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? 
metalc ? metalc4 A OD2 ASP 195 A ASP 197 1_555 C MG MG . A MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc5 B MG MG . A MG 250 1_555 G O HOH . A HOH 352 4_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc6 B MG MG . A MG 250 1_555 G O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.063 ? 
metalc ? metalc7 B MG MG . A MG 250 1_555 G O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? 
metalc ? metalc8 B MG MG . A MG 250 1_555 G O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? 
metalc ? metalc9 B MG MG . A MG 250 1_555 G O HOH . A HOH 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc10 C MG MG . A MG 251 1_555 G O HOH . A HOH 387 3_646 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc11 C MG MG . A MG 251 1_555 G O HOH . A HOH 441 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc12 C MG MG . A MG 251 1_555 G O HOH . A HOH 442 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc13 C MG MG . A MG 251 1_555 G O HOH . A HOH 444 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc14 C MG MG . A MG 251 1_555 G O HOH . A HOH 497 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 124 n n 
C1 C2 EDO sing 125 n n 
C1 H11 EDO sing 126 n n 
C1 H12 EDO sing 127 n n 
O1 HO1 EDO sing 128 n n 
C2 O2 EDO sing 129 n n 
C2 H21 EDO sing 130 n n 
C2 H22 EDO sing 131 n n 
O2 HO2 EDO sing 132 n n 
#
_atom_sites.entry_id                     1JBZ 
_atom_sites.fract_transf_matrix[1][1]    0.019531 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016032 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0145 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 250 250 MG MG . 
C 2 MG A 1 251 251 MG MG . 
D 3 EDO A 1 301 1 EDO EDO . 
E 3 EDO A 1 302 2 EDO EDO . 
F 3 EDO A 1 303 3 EDO EDO . 
G 4 HOH A 1 304 1 HOH HOH . 
G 4 HOH A 2 305 2 HOH HOH . 
G 4 HOH A 3 306 3 HOH HOH . 
G 4 HOH A 4 307 4 HOH HOH . 
G 4 HOH A 5 308 5 HOH HOH . 
G 4 HOH A 6 309 6 HOH HOH . 
G 4 HOH A 7 310 7 HOH HOH . 
G 4 HOH A 8 311 8 HOH HOH . 
G 4 HOH A 9 312 9 HOH HOH . 
G 4 HOH A 10 313 10 HOH HOH . 
G 4 HOH A 11 314 11 HOH HOH . 
G 4 HOH A 12 315 12 HOH HOH . 
G 4 HOH A 13 316 13 HOH HOH . 
G 4 HOH A 14 317 14 HOH HOH . 
G 4 HOH A 15 318 15 HOH HOH . 
G 4 HOH A 16 319 16 HOH HOH . 
G 4 HOH A 17 320 17 HOH HOH . 
G 4 HOH A 18 321 18 HOH HOH . 
G 4 HOH A 19 322 19 HOH HOH . 
G 4 HOH A 20 323 20 HOH HOH . 
G 4 HOH A 21 324 21 HOH HOH . 
G 4 HOH A 22 325 22 HOH HOH . 
G 4 HOH A 23 326 23 HOH HOH . 
G 4 HOH A 24 327 24 HOH HOH . 
G 4 HOH A 25 328 25 HOH HOH . 
G 4 HOH A 26 329 26 HOH HOH . 
G 4 HOH A 27 330 27 HOH HOH . 
G 4 HOH A 28 331 28 HOH HOH . 
G 4 HOH A 29 332 29 HOH HOH . 
G 4 HOH A 30 333 30 HOH HOH . 
G 4 HOH A 31 334 31 HOH HOH . 
G 4 HOH A 32 335 32 HOH HOH . 
G 4 HOH A 33 336 33 HOH HOH . 
G 4 HOH A 34 337 34 HOH HOH . 
G 4 HOH A 35 338 35 HOH HOH . 
G 4 HOH A 36 339 36 HOH HOH . 
G 4 HOH A 37 340 37 HOH HOH . 
G 4 HOH A 38 341 38 HOH HOH . 
G 4 HOH A 39 342 39 HOH HOH . 
G 4 HOH A 40 343 40 HOH HOH . 
G 4 HOH A 41 344 41 HOH HOH . 
G 4 HOH A 42 345 42 HOH HOH . 
G 4 HOH A 43 346 43 HOH HOH . 
G 4 HOH A 44 347 44 HOH HOH . 
G 4 HOH A 45 348 45 HOH HOH . 
G 4 HOH A 46 349 46 HOH HOH . 
G 4 HOH A 47 350 47 HOH HOH . 
G 4 HOH A 48 351 48 HOH HOH . 
G 4 HOH A 49 352 49 HOH HOH . 
G 4 HOH A 50 353 50 HOH HOH . 
G 4 HOH A 51 354 51 HOH HOH . 
G 4 HOH A 52 355 52 HOH HOH . 
G 4 HOH A 53 356 53 HOH HOH . 
G 4 HOH A 54 357 54 HOH HOH . 
G 4 HOH A 55 358 55 HOH HOH . 
G 4 HOH A 56 359 56 HOH HOH . 
G 4 HOH A 57 360 57 HOH HOH . 
G 4 HOH A 58 361 58 HOH HOH . 
G 4 HOH A 59 362 59 HOH HOH . 
G 4 HOH A 60 363 60 HOH HOH . 
G 4 HOH A 61 364 61 HOH HOH . 
G 4 HOH A 62 365 62 HOH HOH . 
G 4 HOH A 63 366 63 HOH HOH . 
G 4 HOH A 64 367 64 HOH HOH . 
G 4 HOH A 65 368 65 HOH HOH . 
G 4 HOH A 66 369 66 HOH HOH . 
G 4 HOH A 67 370 67 HOH HOH . 
G 4 HOH A 68 371 68 HOH HOH . 
G 4 HOH A 69 372 69 HOH HOH . 
G 4 HOH A 70 373 70 HOH HOH . 
G 4 HOH A 71 374 71 HOH HOH . 
G 4 HOH A 72 375 72 HOH HOH . 
G 4 HOH A 73 376 73 HOH HOH . 
G 4 HOH A 74 377 74 HOH HOH . 
G 4 HOH A 75 378 75 HOH HOH . 
G 4 HOH A 76 379 76 HOH HOH . 
G 4 HOH A 77 380 77 HOH HOH . 
G 4 HOH A 78 381 78 HOH HOH . 
G 4 HOH A 79 382 79 HOH HOH . 
G 4 HOH A 80 383 80 HOH HOH . 
G 4 HOH A 81 384 81 HOH HOH . 
G 4 HOH A 82 385 82 HOH HOH . 
G 4 HOH A 83 386 83 HOH HOH . 
G 4 HOH A 84 387 84 HOH HOH . 
G 4 HOH A 85 388 85 HOH HOH . 
G 4 HOH A 86 389 86 HOH HOH . 
G 4 HOH A 87 390 87 HOH HOH . 
G 4 HOH A 88 391 88 HOH HOH . 
G 4 HOH A 89 392 89 HOH HOH . 
G 4 HOH A 90 393 90 HOH HOH . 
G 4 HOH A 91 394 91 HOH HOH . 
G 4 HOH A 92 395 92 HOH HOH . 
G 4 HOH A 93 396 93 HOH HOH . 
G 4 HOH A 94 397 94 HOH HOH . 
G 4 HOH A 95 398 95 HOH HOH . 
G 4 HOH A 96 399 96 HOH HOH . 
G 4 HOH A 97 400 97 HOH HOH . 
G 4 HOH A 98 401 98 HOH HOH . 
G 4 HOH A 99 402 99 HOH HOH . 
G 4 HOH A 100 403 100 HOH HOH . 
G 4 HOH A 101 404 101 HOH HOH . 
G 4 HOH A 102 405 102 HOH HOH . 
G 4 HOH A 103 406 103 HOH HOH . 
G 4 HOH A 104 407 104 HOH HOH . 
G 4 HOH A 105 408 105 HOH HOH . 
G 4 HOH A 106 409 106 HOH HOH . 
G 4 HOH A 107 410 107 HOH HOH . 
G 4 HOH A 108 411 108 HOH HOH . 
G 4 HOH A 109 412 109 HOH HOH . 
G 4 HOH A 110 413 110 HOH HOH . 
G 4 HOH A 111 414 111 HOH HOH . 
G 4 HOH A 112 415 112 HOH HOH . 
G 4 HOH A 113 416 113 HOH HOH . 
G 4 HOH A 114 417 114 HOH HOH . 
G 4 HOH A 115 418 115 HOH HOH . 
G 4 HOH A 116 419 116 HOH HOH . 
G 4 HOH A 117 420 117 HOH HOH . 
G 4 HOH A 118 421 118 HOH HOH . 
G 4 HOH A 119 422 119 HOH HOH . 
G 4 HOH A 120 423 120 HOH HOH . 
G 4 HOH A 121 424 121 HOH HOH . 
G 4 HOH A 122 425 122 HOH HOH . 
G 4 HOH A 123 426 123 HOH HOH . 
G 4 HOH A 124 427 124 HOH HOH . 
G 4 HOH A 125 428 125 HOH HOH . 
G 4 HOH A 126 429 126 HOH HOH . 
G 4 HOH A 127 430 127 HOH HOH . 
G 4 HOH A 128 431 128 HOH HOH . 
G 4 HOH A 129 432 129 HOH HOH . 
G 4 HOH A 130 433 130 HOH HOH . 
G 4 HOH A 131 434 131 HOH HOH . 
G 4 HOH A 132 435 132 HOH HOH . 
G 4 HOH A 133 436 133 HOH HOH . 
G 4 HOH A 134 437 134 HOH HOH . 
G 4 HOH A 135 438 135 HOH HOH . 
G 4 HOH A 136 439 136 HOH HOH . 
G 4 HOH A 137 440 137 HOH HOH . 
G 4 HOH A 138 441 138 HOH HOH . 
G 4 HOH A 139 442 139 HOH HOH . 
G 4 HOH A 140 443 140 HOH HOH . 
G 4 HOH A 141 444 141 HOH HOH . 
G 4 HOH A 142 445 142 HOH HOH . 
G 4 HOH A 143 446 143 HOH HOH . 
G 4 HOH A 144 447 144 HOH HOH . 
G 4 HOH A 145 448 145 HOH HOH . 
G 4 HOH A 146 449 146 HOH HOH . 
G 4 HOH A 147 450 147 HOH HOH . 
G 4 HOH A 148 451 148 HOH HOH . 
G 4 HOH A 149 452 149 HOH HOH . 
G 4 HOH A 150 453 150 HOH HOH . 
G 4 HOH A 151 454 151 HOH HOH . 
G 4 HOH A 152 455 152 HOH HOH . 
G 4 HOH A 153 456 153 HOH HOH . 
G 4 HOH A 154 457 154 HOH HOH . 
G 4 HOH A 155 458 155 HOH HOH . 
G 4 HOH A 156 459 156 HOH HOH . 
G 4 HOH A 157 460 157 HOH HOH . 
G 4 HOH A 158 461 158 HOH HOH . 
G 4 HOH A 159 462 159 HOH HOH . 
G 4 HOH A 160 463 160 HOH HOH . 
G 4 HOH A 161 464 161 HOH HOH . 
G 4 HOH A 162 465 162 HOH HOH . 
G 4 HOH A 163 466 163 HOH HOH . 
G 4 HOH A 164 467 164 HOH HOH . 
G 4 HOH A 165 468 165 HOH HOH . 
G 4 HOH A 166 469 166 HOH HOH . 
G 4 HOH A 167 470 167 HOH HOH . 
G 4 HOH A 168 471 168 HOH HOH . 
G 4 HOH A 169 472 169 HOH HOH . 
G 4 HOH A 170 473 170 HOH HOH . 
G 4 HOH A 171 474 171 HOH HOH . 
G 4 HOH A 172 475 172 HOH HOH . 
G 4 HOH A 173 476 173 HOH HOH . 
G 4 HOH A 174 477 174 HOH HOH . 
G 4 HOH A 175 478 175 HOH HOH . 
G 4 HOH A 176 479 176 HOH HOH . 
G 4 HOH A 177 480 177 HOH HOH . 
G 4 HOH A 178 481 178 HOH HOH . 
G 4 HOH A 179 482 179 HOH HOH . 
G 4 HOH A 180 483 180 HOH HOH . 
G 4 HOH A 181 484 181 HOH HOH . 
G 4 HOH A 182 485 182 HOH HOH . 
G 4 HOH A 183 486 183 HOH HOH . 
G 4 HOH A 184 487 184 HOH HOH . 
G 4 HOH A 185 488 185 HOH HOH . 
G 4 HOH A 186 489 186 HOH HOH . 
G 4 HOH A 187 490 187 HOH HOH . 
G 4 HOH A 188 491 188 HOH HOH . 
G 4 HOH A 189 492 189 HOH HOH . 
G 4 HOH A 190 493 190 HOH HOH . 
G 4 HOH A 191 494 191 HOH HOH . 
G 4 HOH A 192 495 192 HOH HOH . 
G 4 HOH A 193 496 193 HOH HOH . 
G 4 HOH A 194 497 194 HOH HOH . 
G 4 HOH A 195 498 195 HOH HOH . 
G 4 HOH A 196 499 196 HOH HOH . 
G 4 HOH A 197 500 197 HOH HOH . 
G 4 HOH A 198 501 198 HOH HOH . 
G 4 HOH A 199 502 199 HOH HOH . 
G 4 HOH A 200 503 200 HOH HOH . 
G 4 HOH A 201 504 201 HOH HOH . 
G 4 HOH A 202 505 202 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 12.133 28.599 42.77 1 27.97 ? C1 EDO 303 A 1 
HETATM 2 O O1 EDO . . . F 3 11.456 29.529 43.611 1 40.04 ? O1 EDO 303 A 1 
HETATM 3 C C2 EDO . . . F 3 11.242 27.413 42.375 1 32.64 ? C2 EDO 303 A 1 
HETATM 4 O O2 EDO . . . F 3 10.159 27.881 41.619 1 39.19 ? O2 EDO 303 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           4 
#