data_1JCG # _model_server_result.job_id 3TXqQOH8yY2zOf3tqsDEEA _model_server_result.datetime_utc '2024-11-29 12:16:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jcg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":346}' # _entry.id 1JCG # _exptl.entry_id 1JCG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JCG _cell.length_a 51.1 _cell.length_b 51.1 _cell.length_c 292.9 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 1JCG _atom_sites.fract_transf_matrix[1][1] 0.019569 _atom_sites.fract_transf_matrix[1][2] 0.011298 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 345 1 MG MG . C 3 ANP A 1 346 1 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 23.243 6.854 124.049 1 46.07 ? PG ANP 346 A 1 HETATM 2 O O1G ANP . . . C 3 22.687 6.724 122.598 1 45.61 ? O1G ANP 346 A 1 HETATM 3 O O2G ANP . . . C 3 23.725 8.281 124.433 1 45.5 ? O2G ANP 346 A 1 HETATM 4 O O3G ANP . . . C 3 22.375 6.201 125.128 1 47.09 ? O3G ANP 346 A 1 HETATM 5 P PB ANP . . . C 3 26.14 6.273 124.4 1 38.78 ? PB ANP 346 A 1 HETATM 6 O O1B ANP . . . C 3 26.004 7.228 125.592 1 40.42 ? O1B ANP 346 A 1 HETATM 7 O O2B ANP . . . C 3 27.095 5.201 124.708 1 40.61 ? O2B ANP 346 A 1 HETATM 8 N N3B ANP . . . C 3 24.651 5.907 124.041 1 42.01 ? N3B ANP 346 A 1 HETATM 9 P PA ANP . . . C 3 28.424 7.856 122.974 1 38.22 ? PA ANP 346 A 1 HETATM 10 O O1A ANP . . . C 3 28.295 9.377 122.859 1 39.59 ? O1A ANP 346 A 1 HETATM 11 O O2A ANP . . . C 3 29.467 7.389 124.003 1 37.88 ? O2A ANP 346 A 1 HETATM 12 O O3A ANP . . . C 3 26.975 7.202 123.296 1 39.1 ? O3A ANP 346 A 1 HETATM 13 O O5' ANP . . . C 3 28.686 7.191 121.5 1 38.78 ? O5' ANP 346 A 1 HETATM 14 C C5' ANP . . . C 3 29.01 5.805 121.618 1 38.2 ? C5' ANP 346 A 1 HETATM 15 C C4' ANP . . . C 3 29.024 5.201 120.204 1 37.5 ? C4' ANP 346 A 1 HETATM 16 O O4' ANP . . . C 3 29.911 6.019 119.415 1 36.63 ? O4' ANP 346 A 1 HETATM 17 C C3' ANP . . . C 3 29.673 3.836 120.061 1 38.05 ? C3' ANP 346 A 1 HETATM 18 O O3' ANP . . . C 3 28.873 3.144 119.099 1 37.17 ? O3' ANP 346 A 1 HETATM 19 C C2' ANP . . . C 3 31.052 4.113 119.359 1 38.43 ? C2' ANP 346 A 1 HETATM 20 O O2' ANP . . . C 3 31.467 3.163 118.392 1 39.39 ? O2' ANP 346 A 1 HETATM 21 C C1' ANP . . . C 3 30.9 5.383 118.617 1 37.75 ? C1' ANP 346 A 1 HETATM 22 N N9 ANP . . . C 3 32.194 6.145 118.25 1 36.94 ? N9 ANP 346 A 1 HETATM 23 C C8 ANP . . . C 3 33.259 6.374 119.079 1 36.17 ? C8 ANP 346 A 1 HETATM 24 N N7 ANP . . . C 3 34.257 7.012 118.43 1 35.69 ? N7 ANP 346 A 1 HETATM 25 C C5 ANP . . . C 3 33.82 7.185 117.163 1 35.93 ? C5 ANP 346 A 1 HETATM 26 C C6 ANP . . . C 3 34.521 7.808 116.035 1 36.28 ? C6 ANP 346 A 1 HETATM 27 N N6 ANP . . . C 3 35.8 8.312 116.224 1 35.61 ? N6 ANP 346 A 1 HETATM 28 N N1 ANP . . . C 3 33.864 7.882 114.775 1 35.14 ? N1 ANP 346 A 1 HETATM 29 C C2 ANP . . . C 3 32.577 7.362 114.716 1 34.86 ? C2 ANP 346 A 1 HETATM 30 N N3 ANP . . . C 3 31.922 6.772 115.769 1 35.55 ? N3 ANP 346 A 1 HETATM 31 C C4 ANP . . . C 3 32.511 6.657 117.024 1 36.22 ? C4 ANP 346 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #