data_1JCM # _model_server_result.job_id qKXS-B559oGwNKq-Z0InbA _model_server_result.datetime_utc '2024-11-29 15:21:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jcm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":400}' # _entry.id 1JCM # _exptl.entry_id 1JCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.246 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(O-CARBOXY-PHENYLAMINO)-1-DEOXY-D-RIBULOSE-5-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JCM _cell.length_a 81.638 _cell.length_b 81.638 _cell.length_c 156.745 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JCM _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 81.638 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 40.819 70.700582 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 3 _struct_conn.ptnr1_auth_asym_id P _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 3 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 189 _struct_conn.ptnr2_auth_asym_id P _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 189 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.924 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H18 N O9 P' _chem_comp.formula_weight 351.246 _chem_comp.id 137 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(O-CARBOXY-PHENYLAMINO)-1-DEOXY-D-RIBULOSE-5-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 137 doub 1 n n P O2P 137 sing 2 n n P O3P 137 sing 3 n n P O5' 137 sing 4 n n O2P HOP2 137 sing 5 n n O3P HOP3 137 sing 6 n n O5' C5' 137 sing 7 n n C5' C4' 137 sing 8 n n C5' "H5'1" 137 sing 9 n n C5' "H5'2" 137 sing 10 n n C4' O4' 137 sing 11 n n C4' C3' 137 sing 12 n n C4' H4' 137 sing 13 n n O4' "HO'4" 137 sing 14 n n C3' O3' 137 sing 15 n n C3' C2' 137 sing 16 n n C3' H3' 137 sing 17 n n O3' "HO'3" 137 sing 18 n n C2' O2' 137 sing 19 n n C2' C1' 137 sing 20 n n C2' H2' 137 sing 21 n n O2' "HO'2" 137 sing 22 n n C1' NH 137 sing 23 n n C1' "H1'1" 137 sing 24 n n C1' "H1'2" 137 sing 25 n n NH C2 137 sing 26 n n NH HNH 137 sing 27 n n C1 C2 137 doub 28 n y C1 C6 137 sing 29 n y C1 C7 137 sing 30 n n C2 C3 137 sing 31 n y C3 C4 137 doub 32 n y C3 H3 137 sing 33 n n C4 C5 137 sing 34 n y C4 H4 137 sing 35 n n C5 C6 137 doub 36 n y C5 H5 137 sing 37 n n C6 H6 137 sing 38 n n C7 O71 137 sing 39 n n C7 O72 137 doub 40 n n O71 HO7 137 sing 41 n n # _atom_sites.entry_id 1JCM _atom_sites.fract_transf_matrix[1][1] 0.012249 _atom_sites.fract_transf_matrix[1][2] 0.007072 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 P 1 701 701 PO4 PO4 . C 2 PO4 P 1 705 705 PO4 PO4 . D 2 PO4 P 1 706 706 PO4 PO4 . E 2 PO4 P 1 702 702 PO4 PO4 . F 2 PO4 P 1 703 703 PO4 PO4 . G 2 PO4 P 1 704 704 PO4 PO4 . H 3 137 P 1 400 400 137 137 . I 4 HOH P 1 707 1 HOH HOH . I 4 HOH P 2 708 2 HOH HOH . I 4 HOH P 3 709 3 HOH HOH . I 4 HOH P 4 710 4 HOH HOH . I 4 HOH P 5 711 5 HOH HOH . I 4 HOH P 6 712 6 HOH HOH . I 4 HOH P 7 713 7 HOH HOH . I 4 HOH P 8 714 8 HOH HOH . I 4 HOH P 9 715 9 HOH HOH . I 4 HOH P 10 716 10 HOH HOH . I 4 HOH P 11 717 11 HOH HOH . I 4 HOH P 12 718 12 HOH HOH . I 4 HOH P 13 719 13 HOH HOH . I 4 HOH P 14 720 14 HOH HOH . I 4 HOH P 15 721 15 HOH HOH . I 4 HOH P 16 722 16 HOH HOH . I 4 HOH P 17 723 17 HOH HOH . I 4 HOH P 18 724 18 HOH HOH . I 4 HOH P 19 725 19 HOH HOH . I 4 HOH P 20 726 20 HOH HOH . I 4 HOH P 21 727 21 HOH HOH . I 4 HOH P 22 728 22 HOH HOH . I 4 HOH P 23 729 23 HOH HOH . I 4 HOH P 24 730 24 HOH HOH . I 4 HOH P 25 731 25 HOH HOH . I 4 HOH P 26 732 26 HOH HOH . I 4 HOH P 27 733 27 HOH HOH . I 4 HOH P 28 734 28 HOH HOH . I 4 HOH P 29 735 29 HOH HOH . I 4 HOH P 30 736 30 HOH HOH . I 4 HOH P 31 737 31 HOH HOH . I 4 HOH P 32 738 32 HOH HOH . I 4 HOH P 33 739 33 HOH HOH . I 4 HOH P 34 740 34 HOH HOH . I 4 HOH P 35 741 35 HOH HOH . I 4 HOH P 36 742 36 HOH HOH . I 4 HOH P 37 743 37 HOH HOH . I 4 HOH P 38 744 38 HOH HOH . I 4 HOH P 39 745 39 HOH HOH . I 4 HOH P 40 746 40 HOH HOH . I 4 HOH P 41 747 41 HOH HOH . I 4 HOH P 42 748 42 HOH HOH . I 4 HOH P 43 749 43 HOH HOH . I 4 HOH P 44 750 44 HOH HOH . I 4 HOH P 45 751 45 HOH HOH . I 4 HOH P 46 752 46 HOH HOH . I 4 HOH P 47 753 47 HOH HOH . I 4 HOH P 48 754 48 HOH HOH . I 4 HOH P 49 755 49 HOH HOH . I 4 HOH P 50 756 50 HOH HOH . I 4 HOH P 51 757 51 HOH HOH . I 4 HOH P 52 758 52 HOH HOH . I 4 HOH P 53 759 53 HOH HOH . I 4 HOH P 54 760 54 HOH HOH . I 4 HOH P 55 761 55 HOH HOH . I 4 HOH P 56 762 56 HOH HOH . I 4 HOH P 57 763 57 HOH HOH . I 4 HOH P 58 764 58 HOH HOH . I 4 HOH P 59 765 59 HOH HOH . I 4 HOH P 60 766 60 HOH HOH . I 4 HOH P 61 767 61 HOH HOH . I 4 HOH P 62 768 62 HOH HOH . I 4 HOH P 63 769 63 HOH HOH . I 4 HOH P 64 770 64 HOH HOH . I 4 HOH P 65 771 65 HOH HOH . I 4 HOH P 66 772 66 HOH HOH . I 4 HOH P 67 773 67 HOH HOH . I 4 HOH P 68 774 68 HOH HOH . I 4 HOH P 69 775 69 HOH HOH . I 4 HOH P 70 776 70 HOH HOH . I 4 HOH P 71 777 71 HOH HOH . I 4 HOH P 72 778 72 HOH HOH . I 4 HOH P 73 779 73 HOH HOH . I 4 HOH P 74 780 74 HOH HOH . I 4 HOH P 75 781 75 HOH HOH . I 4 HOH P 76 782 76 HOH HOH . I 4 HOH P 77 783 77 HOH HOH . I 4 HOH P 78 784 78 HOH HOH . I 4 HOH P 79 785 79 HOH HOH . I 4 HOH P 80 786 80 HOH HOH . I 4 HOH P 81 787 81 HOH HOH . I 4 HOH P 82 788 82 HOH HOH . I 4 HOH P 83 789 83 HOH HOH . I 4 HOH P 84 790 84 HOH HOH . I 4 HOH P 85 791 85 HOH HOH . I 4 HOH P 86 792 86 HOH HOH . I 4 HOH P 87 793 87 HOH HOH . I 4 HOH P 88 794 88 HOH HOH . I 4 HOH P 89 795 89 HOH HOH . I 4 HOH P 90 796 90 HOH HOH . I 4 HOH P 91 797 91 HOH HOH . I 4 HOH P 92 798 92 HOH HOH . I 4 HOH P 93 799 93 HOH HOH . I 4 HOH P 94 800 94 HOH HOH . I 4 HOH P 95 801 95 HOH HOH . I 4 HOH P 96 802 96 HOH HOH . I 4 HOH P 97 803 97 HOH HOH . I 4 HOH P 98 804 98 HOH HOH . I 4 HOH P 99 805 99 HOH HOH . I 4 HOH P 100 806 100 HOH HOH . I 4 HOH P 101 807 101 HOH HOH . I 4 HOH P 102 808 102 HOH HOH . I 4 HOH P 103 809 103 HOH HOH . I 4 HOH P 104 810 104 HOH HOH . I 4 HOH P 105 811 105 HOH HOH . I 4 HOH P 106 812 106 HOH HOH . I 4 HOH P 107 813 107 HOH HOH . I 4 HOH P 108 814 108 HOH HOH . I 4 HOH P 109 815 109 HOH HOH . I 4 HOH P 110 816 110 HOH HOH . I 4 HOH P 111 817 111 HOH HOH . I 4 HOH P 112 818 112 HOH HOH . I 4 HOH P 113 819 113 HOH HOH . I 4 HOH P 114 820 114 HOH HOH . I 4 HOH P 115 821 115 HOH HOH . I 4 HOH P 116 822 116 HOH HOH . I 4 HOH P 117 823 117 HOH HOH . I 4 HOH P 118 824 118 HOH HOH . I 4 HOH P 119 825 119 HOH HOH . I 4 HOH P 120 826 120 HOH HOH . I 4 HOH P 121 827 121 HOH HOH . I 4 HOH P 122 828 122 HOH HOH . I 4 HOH P 123 829 123 HOH HOH . I 4 HOH P 124 830 124 HOH HOH . I 4 HOH P 125 831 125 HOH HOH . I 4 HOH P 126 832 126 HOH HOH . I 4 HOH P 127 833 127 HOH HOH . I 4 HOH P 128 834 128 HOH HOH . I 4 HOH P 129 835 129 HOH HOH . I 4 HOH P 130 836 130 HOH HOH . I 4 HOH P 131 837 131 HOH HOH . I 4 HOH P 132 838 132 HOH HOH . I 4 HOH P 133 839 133 HOH HOH . I 4 HOH P 134 840 134 HOH HOH . I 4 HOH P 135 841 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 137 . . . H 3 24.711 38.959 70.004 1 44.47 ? P 137 400 P 1 HETATM 2 O O1P 137 . . . H 3 24.674 40.4 70.161 1 42.76 ? O1P 137 400 P 1 HETATM 3 O O2P 137 . . . H 3 26.133 38.546 69.891 1 43.43 ? O2P 137 400 P 1 HETATM 4 O O3P 137 . . . H 3 24 38.213 71.091 1 39.44 ? O3P 137 400 P 1 HETATM 5 O O5' 137 . . . H 3 23.95 38.748 68.723 1 38.06 ? O5' 137 400 P 1 HETATM 6 C C5' 137 . . . H 3 24.36 38.828 67.512 1 41.09 ? C5' 137 400 P 1 HETATM 7 C C4' 137 . . . H 3 23.383 38.592 66.321 1 34.97 ? C4' 137 400 P 1 HETATM 8 O O4' 137 . . . H 3 23.148 37.196 66.134 1 32.38 ? O4' 137 400 P 1 HETATM 9 C C3' 137 . . . H 3 22.013 39.294 66.546 1 38.69 ? C3' 137 400 P 1 HETATM 10 O O3' 137 . . . H 3 22.315 40.665 66.593 1 39.71 ? O3' 137 400 P 1 HETATM 11 C C2' 137 . . . H 3 20.996 39.116 65.377 1 43.61 ? C2' 137 400 P 1 HETATM 12 O O2' 137 . . . H 3 21.427 39.535 64.127 1 60.61 ? O2' 137 400 P 1 HETATM 13 C C1' 137 . . . H 3 19.668 39.799 65.601 1 53.51 ? C1' 137 400 P 1 HETATM 14 N NH 137 . . . H 3 19.149 39.411 66.878 1 55.21 ? NH 137 400 P 1 HETATM 15 C C1 137 . . . H 3 17.269 39.813 68.44 1 59.25 ? C1 137 400 P 1 HETATM 16 C C2 137 . . . H 3 17.769 39.419 67.125 1 58.16 ? C2 137 400 P 1 HETATM 17 C C3 137 . . . H 3 16.862 39.028 66.058 1 53.29 ? C3 137 400 P 1 HETATM 18 C C4 137 . . . H 3 15.468 39.031 66.301 1 61.1 ? C4 137 400 P 1 HETATM 19 C C5 137 . . . H 3 14.957 39.417 67.588 1 40.45 ? C5 137 400 P 1 HETATM 20 C C6 137 . . . H 3 15.843 39.798 68.637 1 64.82 ? C6 137 400 P 1 HETATM 21 C C7 137 . . . H 3 18.134 40.226 69.595 1 66.73 ? C7 137 400 P 1 HETATM 22 O O71 137 . . . H 3 19.361 40.275 69.532 1 54.94 ? O71 137 400 P 1 HETATM 23 O O72 137 . . . H 3 17.605 40.532 70.659 1 62.66 ? O72 137 400 P 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #