data_1JCY # _model_server_result.job_id '_uOFKQbz8JybVXA3o9Wtyw' _model_server_result.datetime_utc '2024-11-24 08:52:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1268}' # _entry.id 1JCY # _exptl.entry_id 1JCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.042 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOENOLPYRUVATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JCY _cell.length_a 84.316 _cell.length_b 84.316 _cell.length_c 159.569 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 1011 1_555 D CD CD . A CD 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc2 A NE2 HIS 185 A HIS 1185 1_555 D CD CD . A CD 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A OE2 GLU 222 A GLU 1222 1_555 D CD CD . A CD 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc4 A OE1 GLU 222 A GLU 1222 1_555 D CD CD . A CD 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc5 A OD2 ASP 233 A ASP 1233 1_555 D CD CD . A CD 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc6 B SG CYS 11 B CYS 2011 1_555 F CD CD . B CD 2270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc7 B NE2 HIS 185 B HIS 2185 1_555 F CD CD . B CD 2270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc8 B OE1 GLU 222 B GLU 2222 1_555 F CD CD . B CD 2270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? metalc ? metalc9 B OE2 GLU 222 B GLU 2222 1_555 F CD CD . B CD 2270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc10 B OD2 ASP 233 B ASP 2233 1_555 F CD CD . B CD 2270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? # _chem_comp.formula 'C3 H5 O6 P' _chem_comp.formula_weight 168.042 _chem_comp.id PEP _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHOENOLPYRUVATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEP doub 237 n n C1 O2' PEP sing 238 n n C1 C2 PEP sing 239 n n O2' HO2 PEP sing 240 n n C2 C3 PEP doub 241 n n C2 O2 PEP sing 242 n n C3 H31 PEP sing 243 n n C3 H32 PEP sing 244 n n O2 P PEP sing 245 n n P O1P PEP doub 246 n n P O2P PEP sing 247 n n P O3P PEP sing 248 n n O2P HOP2 PEP sing 249 n n O3P HOP3 PEP sing 250 n n # _atom_sites.entry_id 1JCY _atom_sites.fract_transf_matrix[1][1] 0.01186 _atom_sites.fract_transf_matrix[1][2] 0.006847 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013695 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R5P A 1 1269 1269 R5P R5P . D 3 CD A 1 1270 1270 CD CD . E 4 PEP A 1 1268 1268 PEP PEP . F 3 CD B 1 2270 2270 CD CD . G 5 PO4 B 1 2269 2269 PO4 PO4 . H 4 PEP B 1 2268 2268 PEP PEP . I 6 HOH A 1 3001 3001 HOH HOH . I 6 HOH A 2 3003 3003 HOH HOH . I 6 HOH A 3 3004 3004 HOH HOH . I 6 HOH A 4 3005 3005 HOH HOH . I 6 HOH A 5 3009 3009 HOH HOH . I 6 HOH A 6 3010 3010 HOH HOH . I 6 HOH A 7 3011 3011 HOH HOH . I 6 HOH A 8 3012 3012 HOH HOH . I 6 HOH A 9 3013 3013 HOH HOH . I 6 HOH A 10 3016 3016 HOH HOH . I 6 HOH A 11 3017 3017 HOH HOH . I 6 HOH A 12 3020 3020 HOH HOH . I 6 HOH A 13 3021 3021 HOH HOH . I 6 HOH A 14 3022 3022 HOH HOH . I 6 HOH A 15 3023 3023 HOH HOH . I 6 HOH A 16 3024 3024 HOH HOH . I 6 HOH A 17 3025 3025 HOH HOH . I 6 HOH A 18 3026 3026 HOH HOH . I 6 HOH A 19 3027 3027 HOH HOH . I 6 HOH A 20 3034 3034 HOH HOH . I 6 HOH A 21 3035 3035 HOH HOH . I 6 HOH A 22 3039 3039 HOH HOH . I 6 HOH A 23 3040 3040 HOH HOH . I 6 HOH A 24 3042 3042 HOH HOH . I 6 HOH A 25 3044 3044 HOH HOH . I 6 HOH A 26 3047 3047 HOH HOH . I 6 HOH A 27 3048 3048 HOH HOH . I 6 HOH A 28 3049 3049 HOH HOH . I 6 HOH A 29 3053 3053 HOH HOH . I 6 HOH A 30 3054 3054 HOH HOH . I 6 HOH A 31 3055 3055 HOH HOH . I 6 HOH A 32 3056 3056 HOH HOH . I 6 HOH A 33 3057 3057 HOH HOH . I 6 HOH A 34 3058 3058 HOH HOH . I 6 HOH A 35 3060 3060 HOH HOH . I 6 HOH A 36 3061 3061 HOH HOH . I 6 HOH A 37 3064 3064 HOH HOH . I 6 HOH A 38 3065 3065 HOH HOH . I 6 HOH A 39 3069 3069 HOH HOH . I 6 HOH A 40 3072 3072 HOH HOH . I 6 HOH A 41 3075 3075 HOH HOH . I 6 HOH A 42 3079 3079 HOH HOH . I 6 HOH A 43 3080 3080 HOH HOH . I 6 HOH A 44 3081 3081 HOH HOH . I 6 HOH A 45 3082 3082 HOH HOH . I 6 HOH A 46 3083 3083 HOH HOH . I 6 HOH A 47 3084 3084 HOH HOH . I 6 HOH A 48 3088 3088 HOH HOH . I 6 HOH A 49 3089 3089 HOH HOH . I 6 HOH A 50 3091 3091 HOH HOH . I 6 HOH A 51 3093 3093 HOH HOH . I 6 HOH A 52 3094 3094 HOH HOH . I 6 HOH A 53 3096 3096 HOH HOH . I 6 HOH A 54 3097 3097 HOH HOH . I 6 HOH A 55 3100 3100 HOH HOH . I 6 HOH A 56 3101 3101 HOH HOH . I 6 HOH A 57 3102 3102 HOH HOH . I 6 HOH A 58 3103 3103 HOH HOH . I 6 HOH A 59 3106 3106 HOH HOH . I 6 HOH A 60 3107 3107 HOH HOH . I 6 HOH A 61 3108 3108 HOH HOH . I 6 HOH A 62 3109 3109 HOH HOH . I 6 HOH A 63 3110 3110 HOH HOH . I 6 HOH A 64 3111 3111 HOH HOH . I 6 HOH A 65 3112 3112 HOH HOH . I 6 HOH A 66 3114 3114 HOH HOH . I 6 HOH A 67 3115 3115 HOH HOH . I 6 HOH A 68 3116 3116 HOH HOH . I 6 HOH A 69 3117 3117 HOH HOH . I 6 HOH A 70 3118 3118 HOH HOH . I 6 HOH A 71 3119 3119 HOH HOH . I 6 HOH A 72 3122 3122 HOH HOH . I 6 HOH A 73 3123 3123 HOH HOH . I 6 HOH A 74 3127 3127 HOH HOH . I 6 HOH A 75 3128 3128 HOH HOH . I 6 HOH A 76 3130 3130 HOH HOH . I 6 HOH A 77 3132 3132 HOH HOH . I 6 HOH A 78 3133 3133 HOH HOH . I 6 HOH A 79 3139 3139 HOH HOH . I 6 HOH A 80 3142 3142 HOH HOH . I 6 HOH A 81 3145 3145 HOH HOH . I 6 HOH A 82 3146 3146 HOH HOH . I 6 HOH A 83 3149 3149 HOH HOH . I 6 HOH A 84 3150 3150 HOH HOH . I 6 HOH A 85 3152 3152 HOH HOH . I 6 HOH A 86 3159 3159 HOH HOH . I 6 HOH A 87 3161 3161 HOH HOH . I 6 HOH A 88 3162 3162 HOH HOH . I 6 HOH A 89 3163 3163 HOH HOH . I 6 HOH A 90 3165 3165 HOH HOH . I 6 HOH A 91 3166 3166 HOH HOH . I 6 HOH A 92 3167 3167 HOH HOH . I 6 HOH A 93 3168 3168 HOH HOH . I 6 HOH A 94 3169 3169 HOH HOH . I 6 HOH A 95 3171 3171 HOH HOH . I 6 HOH A 96 3175 3175 HOH HOH . I 6 HOH A 97 3176 3176 HOH HOH . I 6 HOH A 98 3178 3178 HOH HOH . I 6 HOH A 99 3180 3180 HOH HOH . I 6 HOH A 100 3181 3181 HOH HOH . I 6 HOH A 101 3184 3184 HOH HOH . I 6 HOH A 102 3185 3185 HOH HOH . I 6 HOH A 103 3186 3186 HOH HOH . I 6 HOH A 104 3188 3188 HOH HOH . I 6 HOH A 105 3193 3193 HOH HOH . I 6 HOH A 106 3194 3194 HOH HOH . I 6 HOH A 107 3195 3195 HOH HOH . I 6 HOH A 108 3196 3196 HOH HOH . I 6 HOH A 109 3198 3198 HOH HOH . I 6 HOH A 110 3199 3199 HOH HOH . I 6 HOH A 111 3204 3204 HOH HOH . I 6 HOH A 112 3206 3206 HOH HOH . I 6 HOH A 113 3207 3207 HOH HOH . J 6 HOH B 1 3002 3002 HOH HOH . J 6 HOH B 2 3006 3006 HOH HOH . J 6 HOH B 3 3007 3007 HOH HOH . J 6 HOH B 4 3008 3008 HOH HOH . J 6 HOH B 5 3014 3014 HOH HOH . J 6 HOH B 6 3015 3015 HOH HOH . J 6 HOH B 7 3018 3018 HOH HOH . J 6 HOH B 8 3028 3028 HOH HOH . J 6 HOH B 9 3029 3029 HOH HOH . J 6 HOH B 10 3030 3030 HOH HOH . J 6 HOH B 11 3031 3031 HOH HOH . J 6 HOH B 12 3032 3032 HOH HOH . J 6 HOH B 13 3033 3033 HOH HOH . J 6 HOH B 14 3037 3037 HOH HOH . J 6 HOH B 15 3038 3038 HOH HOH . J 6 HOH B 16 3043 3043 HOH HOH . J 6 HOH B 17 3045 3045 HOH HOH . J 6 HOH B 18 3046 3046 HOH HOH . J 6 HOH B 19 3051 3051 HOH HOH . J 6 HOH B 20 3052 3052 HOH HOH . J 6 HOH B 21 3059 3059 HOH HOH . J 6 HOH B 22 3062 3062 HOH HOH . J 6 HOH B 23 3063 3063 HOH HOH . J 6 HOH B 24 3066 3066 HOH HOH . J 6 HOH B 25 3067 3067 HOH HOH . J 6 HOH B 26 3068 3068 HOH HOH . J 6 HOH B 27 3070 3070 HOH HOH . J 6 HOH B 28 3071 3071 HOH HOH . J 6 HOH B 29 3073 3073 HOH HOH . J 6 HOH B 30 3074 3074 HOH HOH . J 6 HOH B 31 3077 3077 HOH HOH . J 6 HOH B 32 3078 3078 HOH HOH . J 6 HOH B 33 3085 3085 HOH HOH . J 6 HOH B 34 3086 3086 HOH HOH . J 6 HOH B 35 3087 3087 HOH HOH . J 6 HOH B 36 3090 3090 HOH HOH . J 6 HOH B 37 3092 3092 HOH HOH . J 6 HOH B 38 3095 3095 HOH HOH . J 6 HOH B 39 3098 3098 HOH HOH . J 6 HOH B 40 3099 3099 HOH HOH . J 6 HOH B 41 3104 3104 HOH HOH . J 6 HOH B 42 3105 3105 HOH HOH . J 6 HOH B 43 3120 3120 HOH HOH . J 6 HOH B 44 3121 3121 HOH HOH . J 6 HOH B 45 3124 3124 HOH HOH . J 6 HOH B 46 3125 3125 HOH HOH . J 6 HOH B 47 3126 3126 HOH HOH . J 6 HOH B 48 3129 3129 HOH HOH . J 6 HOH B 49 3131 3131 HOH HOH . J 6 HOH B 50 3134 3134 HOH HOH . J 6 HOH B 51 3135 3135 HOH HOH . J 6 HOH B 52 3136 3136 HOH HOH . J 6 HOH B 53 3137 3137 HOH HOH . J 6 HOH B 54 3138 3138 HOH HOH . J 6 HOH B 55 3140 3140 HOH HOH . J 6 HOH B 56 3141 3141 HOH HOH . J 6 HOH B 57 3143 3143 HOH HOH . J 6 HOH B 58 3144 3144 HOH HOH . J 6 HOH B 59 3147 3147 HOH HOH . J 6 HOH B 60 3148 3148 HOH HOH . J 6 HOH B 61 3151 3151 HOH HOH . J 6 HOH B 62 3153 3153 HOH HOH . J 6 HOH B 63 3154 3154 HOH HOH . J 6 HOH B 64 3155 3155 HOH HOH . J 6 HOH B 65 3156 3156 HOH HOH . J 6 HOH B 66 3157 3157 HOH HOH . J 6 HOH B 67 3158 3158 HOH HOH . J 6 HOH B 68 3160 3160 HOH HOH . J 6 HOH B 69 3164 3164 HOH HOH . J 6 HOH B 70 3170 3170 HOH HOH . J 6 HOH B 71 3172 3172 HOH HOH . J 6 HOH B 72 3173 3173 HOH HOH . J 6 HOH B 73 3174 3174 HOH HOH . J 6 HOH B 74 3177 3177 HOH HOH . J 6 HOH B 75 3179 3179 HOH HOH . J 6 HOH B 76 3182 3182 HOH HOH . J 6 HOH B 77 3183 3183 HOH HOH . J 6 HOH B 78 3187 3187 HOH HOH . J 6 HOH B 79 3189 3189 HOH HOH . J 6 HOH B 80 3190 3190 HOH HOH . J 6 HOH B 81 3191 3191 HOH HOH . J 6 HOH B 82 3192 3192 HOH HOH . J 6 HOH B 83 3197 3197 HOH HOH . J 6 HOH B 84 3200 3200 HOH HOH . J 6 HOH B 85 3201 3201 HOH HOH . J 6 HOH B 86 3202 3202 HOH HOH . J 6 HOH B 87 3203 3203 HOH HOH . J 6 HOH B 88 3205 3205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEP . . . E 4 32.414 51.768 22.446 1 42.58 ? C1 PEP 1268 A 1 HETATM 2 O O1 PEP . . . E 4 33.127 52.322 23.354 1 42.45 ? O1 PEP 1268 A 1 HETATM 3 O O2' PEP . . . E 4 31.225 51.818 22.535 1 41.92 ? O2' PEP 1268 A 1 HETATM 4 C C2 PEP . . . E 4 33.11 50.982 21.317 1 41.8 ? C2 PEP 1268 A 1 HETATM 5 C C3 PEP . . . E 4 34.399 50.565 21.374 1 40.01 ? C3 PEP 1268 A 1 HETATM 6 O O2 PEP . . . E 4 32.201 50.52 20.36 1 36.67 ? O2 PEP 1268 A 1 HETATM 7 P P PEP . . . E 4 32.179 49.406 19.234 1 32.62 ? P PEP 1268 A 1 HETATM 8 O O1P PEP . . . E 4 32.751 48.138 19.694 1 30.96 ? O1P PEP 1268 A 1 HETATM 9 O O2P PEP . . . E 4 32.804 50.063 18.059 1 30.36 ? O2P PEP 1268 A 1 HETATM 10 O O3P PEP . . . E 4 30.691 49.182 18.827 1 30.58 ? O3P PEP 1268 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #