data_1JD3 # _model_server_result.job_id ZX8Dm8tsvhpPrrA4pB2mQQ _model_server_result.datetime_utc '2024-11-24 19:02:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":165}' # _entry.id 1JD3 # _exptl.entry_id 1JD3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 138.121 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'P-HYDROXYBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JD3 _cell.length_a 32.246 _cell.length_b 64.773 _cell.length_c 72.674 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H6 O3' _chem_comp.formula_weight 138.121 _chem_comp.id PHB _chem_comp.mon_nstd_flag . _chem_comp.name 'P-HYDROXYBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' O1' PHB doub 237 n n C1' O2' PHB sing 238 n n C1' C1 PHB sing 239 n n O2' HO2' PHB sing 240 n n C1 C2 PHB sing 241 n y C1 C6 PHB doub 242 n y C2 C3 PHB doub 243 n y C2 H2 PHB sing 244 n n C3 C4 PHB sing 245 n y C3 H3 PHB sing 246 n n C4 C5 PHB doub 247 n y C4 O4 PHB sing 248 n n C5 C6 PHB sing 249 n y C5 H5 PHB sing 250 n n C6 H6 PHB sing 251 n n O4 HO4 PHB sing 252 n n # _atom_sites.entry_id 1JD3 _atom_sites.fract_transf_matrix[1][1] 0.031012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PHB A 1 165 165 PHB PHB . C 3 HOH A 1 166 166 HOH HOH . C 3 HOH A 2 167 167 HOH HOH . C 3 HOH A 3 168 168 HOH HOH . C 3 HOH A 4 169 169 HOH HOH . C 3 HOH A 5 170 170 HOH HOH . C 3 HOH A 6 171 171 HOH HOH . C 3 HOH A 7 172 172 HOH HOH . C 3 HOH A 8 173 173 HOH HOH . C 3 HOH A 9 174 174 HOH HOH . C 3 HOH A 10 175 175 HOH HOH . C 3 HOH A 11 176 176 HOH HOH . C 3 HOH A 12 177 177 HOH HOH . C 3 HOH A 13 178 178 HOH HOH . C 3 HOH A 14 179 179 HOH HOH . C 3 HOH A 15 180 180 HOH HOH . C 3 HOH A 16 181 181 HOH HOH . C 3 HOH A 17 182 182 HOH HOH . C 3 HOH A 18 183 183 HOH HOH . C 3 HOH A 19 184 184 HOH HOH . C 3 HOH A 20 185 185 HOH HOH . C 3 HOH A 21 186 186 HOH HOH . C 3 HOH A 22 187 187 HOH HOH . C 3 HOH A 23 188 188 HOH HOH . C 3 HOH A 24 189 189 HOH HOH . C 3 HOH A 25 190 190 HOH HOH . C 3 HOH A 26 191 191 HOH HOH . C 3 HOH A 27 192 192 HOH HOH . C 3 HOH A 28 193 193 HOH HOH . C 3 HOH A 29 194 194 HOH HOH . C 3 HOH A 30 195 195 HOH HOH . C 3 HOH A 31 196 196 HOH HOH . C 3 HOH A 32 197 197 HOH HOH . C 3 HOH A 33 198 198 HOH HOH . C 3 HOH A 34 199 199 HOH HOH . C 3 HOH A 35 200 200 HOH HOH . C 3 HOH A 36 201 201 HOH HOH . C 3 HOH A 37 202 202 HOH HOH . C 3 HOH A 38 203 203 HOH HOH . C 3 HOH A 39 204 204 HOH HOH . C 3 HOH A 40 205 205 HOH HOH . C 3 HOH A 41 206 206 HOH HOH . C 3 HOH A 42 207 207 HOH HOH . C 3 HOH A 43 208 208 HOH HOH . C 3 HOH A 44 209 209 HOH HOH . C 3 HOH A 45 210 210 HOH HOH . C 3 HOH A 46 211 211 HOH HOH . C 3 HOH A 47 212 212 HOH HOH . C 3 HOH A 48 213 213 HOH HOH . C 3 HOH A 49 214 214 HOH HOH . C 3 HOH A 50 215 215 HOH HOH . C 3 HOH A 51 216 216 HOH HOH . C 3 HOH A 52 217 217 HOH HOH . C 3 HOH A 53 218 218 HOH HOH . C 3 HOH A 54 219 219 HOH HOH . C 3 HOH A 55 220 220 HOH HOH . C 3 HOH A 56 221 221 HOH HOH . C 3 HOH A 57 222 222 HOH HOH . C 3 HOH A 58 223 223 HOH HOH . C 3 HOH A 59 224 224 HOH HOH . C 3 HOH A 60 225 225 HOH HOH . C 3 HOH A 61 226 226 HOH HOH . C 3 HOH A 62 227 227 HOH HOH . C 3 HOH A 63 228 228 HOH HOH . C 3 HOH A 64 229 229 HOH HOH . C 3 HOH A 65 230 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' PHB . . . B 2 9.68 -6.021 32.164 1 13.96 ? C1' PHB 165 A 1 HETATM 2 O O1' PHB . . . B 2 9.152 -7.149 31.906 1 17.63 ? O1' PHB 165 A 1 HETATM 3 O O2' PHB . . . B 2 9.255 -4.936 31.687 1 16 ? O2' PHB 165 A 1 HETATM 4 C C1 PHB . . . B 2 10.716 -5.97 33.247 1 11.63 ? C1 PHB 165 A 1 HETATM 5 C C2 PHB . . . B 2 11.05 -7.201 33.977 1 12.43 ? C2 PHB 165 A 1 HETATM 6 C C3 PHB . . . B 2 12.089 -7.223 34.92 1 13.4 ? C3 PHB 165 A 1 HETATM 7 C C4 PHB . . . B 2 12.849 -6.01 35.165 1 13.29 ? C4 PHB 165 A 1 HETATM 8 C C5 PHB . . . B 2 12.51 -4.776 34.418 1 12.93 ? C5 PHB 165 A 1 HETATM 9 C C6 PHB . . . B 2 11.436 -4.793 33.472 1 10.56 ? C6 PHB 165 A 1 HETATM 10 O O4 PHB . . . B 2 13.818 -5.994 36.167 1 12.56 ? O4 PHB 165 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 209 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #