data_1JD9 # _model_server_result.job_id 5fxqVDikphoH1EgeushSpA _model_server_result.datetime_utc '2025-08-09 16:41:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jd9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":800}' # _entry.id 1JD9 # _exptl.entry_id 1JD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JD9 _cell.length_a 71.5 _cell.length_b 138.4 _cell.length_c 115.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 20 1_555 A SG CYS 74 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 120 A CYS 120 1_555 A SG CYS 137 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 328 A CYS 328 1_555 A SG CYS 335 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 402 A CYS 402 1_555 A SG CYS 416 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASN 88 A ASN 88 1_555 B CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc2 A O GLN 135 A GLN 135 1_555 B CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 A OD1 ASP 144 A ASP 144 1_555 B CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc4 A OD2 ASP 144 A ASP 144 1_555 B CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc5 A O HIS 178 A HIS 178 1_555 B CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc6 B CA CA . A CA 800 1_555 C O HOH . A HOH 1117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc7 B CA CA . A CA 800 1_555 C O HOH . A HOH 1118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc8 B CA CA . A CA 800 1_555 C O HOH . A HOH 1437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1JD9 _atom_sites.fract_transf_matrix[1][1] 0.013986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 800 800 CA CA . C 3 HOH A 1 1000 1000 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1005 1005 HOH HOH . C 3 HOH A 5 1007 1007 HOH HOH . C 3 HOH A 6 1008 1008 HOH HOH . C 3 HOH A 7 1009 1009 HOH HOH . C 3 HOH A 8 1010 1010 HOH HOH . C 3 HOH A 9 1011 1011 HOH HOH . C 3 HOH A 10 1013 1013 HOH HOH . C 3 HOH A 11 1014 1014 HOH HOH . C 3 HOH A 12 1015 1015 HOH HOH . C 3 HOH A 13 1016 1016 HOH HOH . C 3 HOH A 14 1017 1017 HOH HOH . C 3 HOH A 15 1019 1019 HOH HOH . C 3 HOH A 16 1020 1020 HOH HOH . C 3 HOH A 17 1021 1021 HOH HOH . C 3 HOH A 18 1022 1022 HOH HOH . C 3 HOH A 19 1023 1023 HOH HOH . C 3 HOH A 20 1027 1027 HOH HOH . C 3 HOH A 21 1029 1029 HOH HOH . C 3 HOH A 22 1032 1032 HOH HOH . C 3 HOH A 23 1033 1033 HOH HOH . C 3 HOH A 24 1034 1034 HOH HOH . C 3 HOH A 25 1036 1036 HOH HOH . C 3 HOH A 26 1037 1037 HOH HOH . C 3 HOH A 27 1038 1038 HOH HOH . C 3 HOH A 28 1039 1039 HOH HOH . C 3 HOH A 29 1040 1040 HOH HOH . C 3 HOH A 30 1042 1042 HOH HOH . C 3 HOH A 31 1044 1044 HOH HOH . C 3 HOH A 32 1045 1045 HOH HOH . C 3 HOH A 33 1047 1047 HOH HOH . C 3 HOH A 34 1050 1050 HOH HOH . C 3 HOH A 35 1051 1051 HOH HOH . C 3 HOH A 36 1052 1052 HOH HOH . C 3 HOH A 37 1053 1053 HOH HOH . C 3 HOH A 38 1054 1054 HOH HOH . C 3 HOH A 39 1055 1055 HOH HOH . C 3 HOH A 40 1056 1056 HOH HOH . C 3 HOH A 41 1059 1059 HOH HOH . C 3 HOH A 42 1060 1060 HOH HOH . C 3 HOH A 43 1062 1062 HOH HOH . C 3 HOH A 44 1063 1063 HOH HOH . C 3 HOH A 45 1064 1064 HOH HOH . C 3 HOH A 46 1066 1066 HOH HOH . C 3 HOH A 47 1068 1068 HOH HOH . C 3 HOH A 48 1069 1069 HOH HOH . C 3 HOH A 49 1070 1070 HOH HOH . C 3 HOH A 50 1071 1071 HOH HOH . C 3 HOH A 51 1072 1072 HOH HOH . C 3 HOH A 52 1074 1074 HOH HOH . C 3 HOH A 53 1077 1077 HOH HOH . C 3 HOH A 54 1078 1078 HOH HOH . C 3 HOH A 55 1079 1079 HOH HOH . C 3 HOH A 56 1082 1082 HOH HOH . C 3 HOH A 57 1085 1085 HOH HOH . C 3 HOH A 58 1087 1087 HOH HOH . C 3 HOH A 59 1088 1088 HOH HOH . C 3 HOH A 60 1089 1089 HOH HOH . C 3 HOH A 61 1090 1090 HOH HOH . C 3 HOH A 62 1091 1091 HOH HOH . C 3 HOH A 63 1092 1092 HOH HOH . C 3 HOH A 64 1093 1093 HOH HOH . C 3 HOH A 65 1094 1094 HOH HOH . C 3 HOH A 66 1098 1098 HOH HOH . C 3 HOH A 67 1101 1101 HOH HOH . C 3 HOH A 68 1102 1102 HOH HOH . C 3 HOH A 69 1105 1105 HOH HOH . C 3 HOH A 70 1106 1106 HOH HOH . C 3 HOH A 71 1108 1108 HOH HOH . C 3 HOH A 72 1109 1109 HOH HOH . C 3 HOH A 73 1110 1110 HOH HOH . C 3 HOH A 74 1111 1111 HOH HOH . C 3 HOH A 75 1113 1113 HOH HOH . C 3 HOH A 76 1114 1114 HOH HOH . C 3 HOH A 77 1117 1117 HOH HOH . C 3 HOH A 78 1118 1118 HOH HOH . C 3 HOH A 79 1119 1119 HOH HOH . C 3 HOH A 80 1122 1122 HOH HOH . C 3 HOH A 81 1128 1128 HOH HOH . C 3 HOH A 82 1131 1131 HOH HOH . C 3 HOH A 83 1133 1133 HOH HOH . C 3 HOH A 84 1134 1134 HOH HOH . C 3 HOH A 85 1137 1137 HOH HOH . C 3 HOH A 86 1138 1138 HOH HOH . C 3 HOH A 87 1139 1139 HOH HOH . C 3 HOH A 88 1140 1140 HOH HOH . C 3 HOH A 89 1143 1143 HOH HOH . C 3 HOH A 90 1144 1144 HOH HOH . C 3 HOH A 91 1147 1147 HOH HOH . C 3 HOH A 92 1149 1149 HOH HOH . C 3 HOH A 93 1151 1151 HOH HOH . C 3 HOH A 94 1152 1152 HOH HOH . C 3 HOH A 95 1156 1156 HOH HOH . C 3 HOH A 96 1160 1160 HOH HOH . C 3 HOH A 97 1161 1161 HOH HOH . C 3 HOH A 98 1165 1165 HOH HOH . C 3 HOH A 99 1172 1172 HOH HOH . C 3 HOH A 100 1175 1175 HOH HOH . C 3 HOH A 101 1176 1176 HOH HOH . C 3 HOH A 102 1177 1177 HOH HOH . C 3 HOH A 103 1183 1183 HOH HOH . C 3 HOH A 104 1186 1186 HOH HOH . C 3 HOH A 105 1189 1189 HOH HOH . C 3 HOH A 106 1191 1191 HOH HOH . C 3 HOH A 107 1195 1195 HOH HOH . C 3 HOH A 108 1199 1199 HOH HOH . C 3 HOH A 109 1202 1202 HOH HOH . C 3 HOH A 110 1209 1209 HOH HOH . C 3 HOH A 111 1216 1216 HOH HOH . C 3 HOH A 112 1219 1219 HOH HOH . C 3 HOH A 113 1223 1223 HOH HOH . C 3 HOH A 114 1225 1225 HOH HOH . C 3 HOH A 115 1235 1235 HOH HOH . C 3 HOH A 116 1239 1239 HOH HOH . C 3 HOH A 117 1241 1241 HOH HOH . C 3 HOH A 118 1242 1242 HOH HOH . C 3 HOH A 119 1244 1244 HOH HOH . C 3 HOH A 120 1246 1246 HOH HOH . C 3 HOH A 121 1247 1247 HOH HOH . C 3 HOH A 122 1248 1248 HOH HOH . C 3 HOH A 123 1251 1251 HOH HOH . C 3 HOH A 124 1255 1255 HOH HOH . C 3 HOH A 125 1256 1256 HOH HOH . C 3 HOH A 126 1257 1257 HOH HOH . C 3 HOH A 127 1260 1260 HOH HOH . C 3 HOH A 128 1262 1262 HOH HOH . C 3 HOH A 129 1266 1266 HOH HOH . C 3 HOH A 130 1270 1270 HOH HOH . C 3 HOH A 131 1271 1271 HOH HOH . C 3 HOH A 132 1290 1290 HOH HOH . C 3 HOH A 133 1293 1293 HOH HOH . C 3 HOH A 134 1294 1294 HOH HOH . C 3 HOH A 135 1298 1298 HOH HOH . C 3 HOH A 136 1299 1299 HOH HOH . C 3 HOH A 137 1301 1301 HOH HOH . C 3 HOH A 138 1303 1303 HOH HOH . C 3 HOH A 139 1305 1305 HOH HOH . C 3 HOH A 140 1306 1306 HOH HOH . C 3 HOH A 141 1307 1307 HOH HOH . C 3 HOH A 142 1310 1310 HOH HOH . C 3 HOH A 143 1331 1331 HOH HOH . C 3 HOH A 144 1334 1334 HOH HOH . C 3 HOH A 145 1346 1346 HOH HOH . C 3 HOH A 146 1367 1367 HOH HOH . C 3 HOH A 147 1394 1394 HOH HOH . C 3 HOH A 148 1395 1395 HOH HOH . C 3 HOH A 149 1396 1396 HOH HOH . C 3 HOH A 150 1397 1397 HOH HOH . C 3 HOH A 151 1398 1398 HOH HOH . C 3 HOH A 152 1399 1399 HOH HOH . C 3 HOH A 153 1400 1400 HOH HOH . C 3 HOH A 154 1401 1401 HOH HOH . C 3 HOH A 155 1402 1402 HOH HOH . C 3 HOH A 156 1403 1403 HOH HOH . C 3 HOH A 157 1404 1404 HOH HOH . C 3 HOH A 158 1405 1405 HOH HOH . C 3 HOH A 159 1406 1406 HOH HOH . C 3 HOH A 160 1407 1407 HOH HOH . C 3 HOH A 161 1408 1408 HOH HOH . C 3 HOH A 162 1409 1409 HOH HOH . C 3 HOH A 163 1410 1410 HOH HOH . C 3 HOH A 164 1411 1411 HOH HOH . C 3 HOH A 165 1412 1412 HOH HOH . C 3 HOH A 166 1413 1413 HOH HOH . C 3 HOH A 167 1414 1414 HOH HOH . C 3 HOH A 168 1415 1415 HOH HOH . C 3 HOH A 169 1416 1416 HOH HOH . C 3 HOH A 170 1417 1417 HOH HOH . C 3 HOH A 171 1418 1418 HOH HOH . C 3 HOH A 172 1419 1419 HOH HOH . C 3 HOH A 173 1420 1420 HOH HOH . C 3 HOH A 174 1421 1421 HOH HOH . C 3 HOH A 175 1422 1422 HOH HOH . C 3 HOH A 176 1423 1423 HOH HOH . C 3 HOH A 177 1424 1424 HOH HOH . C 3 HOH A 178 1425 1425 HOH HOH . C 3 HOH A 179 1426 1426 HOH HOH . C 3 HOH A 180 1427 1427 HOH HOH . C 3 HOH A 181 1428 1428 HOH HOH . C 3 HOH A 182 1429 1429 HOH HOH . C 3 HOH A 183 1430 1430 HOH HOH . C 3 HOH A 184 1431 1431 HOH HOH . C 3 HOH A 185 1432 1432 HOH HOH . C 3 HOH A 186 1433 1433 HOH HOH . C 3 HOH A 187 1434 1434 HOH HOH . C 3 HOH A 188 1435 1435 HOH HOH . C 3 HOH A 189 1436 1436 HOH HOH . C 3 HOH A 190 1437 1437 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.135 _atom_site.Cartn_y 35.189 _atom_site.Cartn_z -5.951 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 800 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #