data_1JDC # _model_server_result.job_id 9TyRsPienIEOJgLhm9vLlw _model_server_result.datetime_utc '2024-11-22 09:28:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":452}' # _entry.id 1JDC # _exptl.entry_id 1JDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JDC _cell.length_a 65.1 _cell.length_b 138.4 _cell.length_c 50.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC ? 463 GLC 2 n B GLC 2 B 2 GLC ? 462 GLC 2 n B GLC 3 B 3 GLC ? 461 GLC 2 n B GLC 4 B 4 GLC ? 460 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 140 A CYS 140 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 216 A CYS 216 1_555 A SG CYS 251 A CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale2 B O4 GLC . B GLC 2 1_555 B C1 GLC . B GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale3 B O4 GLC . B GLC 3 1_555 B C1 GLC . B GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? metalc ? metalc1 A OD1 ASP 1 A ASP 1 1_555 D CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc2 A O GLN 2 A GLN 2 1_555 D CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc3 A ND1 HIS 13 A HIS 13 1_555 D CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc4 A O HIS 13 A HIS 13 1_555 D CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc5 A OD1 ASP 16 A ASP 16 1_555 D CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc6 A OE2 GLU 17 A GLU 17 1_555 D CA CA . A CA 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc7 A OD1 ASN 116 A ASN 116 1_555 C CA CA . A CA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc8 A OD2 ASP 151 A ASP 151 1_555 C CA CA . A CA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc9 A OD1 ASP 151 A ASP 151 1_555 C CA CA . A CA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc10 A O ASP 154 A ASP 154 1_555 C CA CA . A CA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc11 A OD2 ASP 162 A ASP 162 1_555 C CA CA . A CA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc12 A O GLY 197 A GLY 197 1_555 C CA CA . A CA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc13 C CA CA . A CA 451 1_555 E O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1JDC _atom_sites.fract_transf_matrix[1][1] 0.015361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 451 451 CA CA . D 3 CA A 1 452 452 CA CA . E 4 HOH A 1 501 501 HOH HOH . E 4 HOH A 2 502 502 HOH HOH . E 4 HOH A 3 503 503 HOH HOH . E 4 HOH A 4 504 504 HOH HOH . E 4 HOH A 5 505 505 HOH HOH . E 4 HOH A 6 506 506 HOH HOH . E 4 HOH A 7 507 507 HOH HOH . E 4 HOH A 8 508 508 HOH HOH . E 4 HOH A 9 509 509 HOH HOH . E 4 HOH A 10 510 510 HOH HOH . E 4 HOH A 11 511 511 HOH HOH . E 4 HOH A 12 512 512 HOH HOH . E 4 HOH A 13 513 513 HOH HOH . E 4 HOH A 14 514 514 HOH HOH . E 4 HOH A 15 515 515 HOH HOH . E 4 HOH A 16 517 517 HOH HOH . E 4 HOH A 17 518 518 HOH HOH . E 4 HOH A 18 519 519 HOH HOH . E 4 HOH A 19 520 520 HOH HOH . E 4 HOH A 20 521 521 HOH HOH . E 4 HOH A 21 522 522 HOH HOH . E 4 HOH A 22 523 523 HOH HOH . E 4 HOH A 23 524 524 HOH HOH . E 4 HOH A 24 526 526 HOH HOH . E 4 HOH A 25 527 527 HOH HOH . E 4 HOH A 26 528 528 HOH HOH . E 4 HOH A 27 529 529 HOH HOH . E 4 HOH A 28 530 530 HOH HOH . E 4 HOH A 29 531 531 HOH HOH . E 4 HOH A 30 532 532 HOH HOH . E 4 HOH A 31 533 533 HOH HOH . E 4 HOH A 32 534 534 HOH HOH . E 4 HOH A 33 535 535 HOH HOH . E 4 HOH A 34 538 538 HOH HOH . E 4 HOH A 35 540 540 HOH HOH . E 4 HOH A 36 541 541 HOH HOH . E 4 HOH A 37 542 542 HOH HOH . E 4 HOH A 38 543 543 HOH HOH . E 4 HOH A 39 544 544 HOH HOH . E 4 HOH A 40 545 545 HOH HOH . E 4 HOH A 41 546 546 HOH HOH . E 4 HOH A 42 547 547 HOH HOH . E 4 HOH A 43 548 548 HOH HOH . E 4 HOH A 44 551 551 HOH HOH . E 4 HOH A 45 553 553 HOH HOH . E 4 HOH A 46 554 554 HOH HOH . E 4 HOH A 47 555 555 HOH HOH . E 4 HOH A 48 556 556 HOH HOH . E 4 HOH A 49 557 557 HOH HOH . E 4 HOH A 50 558 558 HOH HOH . E 4 HOH A 51 559 559 HOH HOH . E 4 HOH A 52 560 560 HOH HOH . E 4 HOH A 53 564 564 HOH HOH . E 4 HOH A 54 565 565 HOH HOH . E 4 HOH A 55 566 566 HOH HOH . E 4 HOH A 56 567 567 HOH HOH . E 4 HOH A 57 569 569 HOH HOH . E 4 HOH A 58 571 571 HOH HOH . E 4 HOH A 59 573 573 HOH HOH . E 4 HOH A 60 574 574 HOH HOH . E 4 HOH A 61 575 575 HOH HOH . E 4 HOH A 62 576 576 HOH HOH . E 4 HOH A 63 578 578 HOH HOH . E 4 HOH A 64 583 583 HOH HOH . E 4 HOH A 65 584 584 HOH HOH . E 4 HOH A 66 589 589 HOH HOH . E 4 HOH A 67 590 590 HOH HOH . E 4 HOH A 68 591 591 HOH HOH . E 4 HOH A 69 592 592 HOH HOH . E 4 HOH A 70 593 593 HOH HOH . E 4 HOH A 71 596 596 HOH HOH . E 4 HOH A 72 601 601 HOH HOH . E 4 HOH A 73 602 602 HOH HOH . E 4 HOH A 74 605 605 HOH HOH . E 4 HOH A 75 607 607 HOH HOH . E 4 HOH A 76 608 608 HOH HOH . E 4 HOH A 77 609 609 HOH HOH . E 4 HOH A 78 611 611 HOH HOH . E 4 HOH A 79 620 620 HOH HOH . E 4 HOH A 80 622 622 HOH HOH . E 4 HOH A 81 623 623 HOH HOH . E 4 HOH A 82 625 625 HOH HOH . E 4 HOH A 83 631 631 HOH HOH . E 4 HOH A 84 634 634 HOH HOH . E 4 HOH A 85 635 635 HOH HOH . E 4 HOH A 86 638 638 HOH HOH . E 4 HOH A 87 640 640 HOH HOH . E 4 HOH A 88 645 645 HOH HOH . E 4 HOH A 89 646 646 HOH HOH . E 4 HOH A 90 649 649 HOH HOH . E 4 HOH A 91 651 651 HOH HOH . E 4 HOH A 92 652 652 HOH HOH . E 4 HOH A 93 657 657 HOH HOH . E 4 HOH A 94 658 658 HOH HOH . E 4 HOH A 95 663 663 HOH HOH . E 4 HOH A 96 665 665 HOH HOH . E 4 HOH A 97 666 666 HOH HOH . E 4 HOH A 98 667 667 HOH HOH . E 4 HOH A 99 668 668 HOH HOH . E 4 HOH A 100 670 670 HOH HOH . E 4 HOH A 101 672 672 HOH HOH . E 4 HOH A 102 675 675 HOH HOH . E 4 HOH A 103 678 678 HOH HOH . E 4 HOH A 104 680 680 HOH HOH . E 4 HOH A 105 681 681 HOH HOH . E 4 HOH A 106 682 682 HOH HOH . E 4 HOH A 107 683 683 HOH HOH . E 4 HOH A 108 684 684 HOH HOH . E 4 HOH A 109 685 685 HOH HOH . E 4 HOH A 110 686 686 HOH HOH . E 4 HOH A 111 687 687 HOH HOH . E 4 HOH A 112 688 688 HOH HOH . E 4 HOH A 113 689 689 HOH HOH . E 4 HOH A 114 690 690 HOH HOH . E 4 HOH A 115 691 691 HOH HOH . E 4 HOH A 116 692 692 HOH HOH . E 4 HOH A 117 693 693 HOH HOH . E 4 HOH A 118 694 694 HOH HOH . E 4 HOH A 119 700 700 HOH HOH . E 4 HOH A 120 701 701 HOH HOH . E 4 HOH A 121 702 702 HOH HOH . E 4 HOH A 122 703 703 HOH HOH . E 4 HOH A 123 704 704 HOH HOH . E 4 HOH A 124 706 706 HOH HOH . E 4 HOH A 125 707 707 HOH HOH . E 4 HOH A 126 708 708 HOH HOH . E 4 HOH A 127 709 709 HOH HOH . E 4 HOH A 128 710 710 HOH HOH . E 4 HOH A 129 711 711 HOH HOH . E 4 HOH A 130 712 712 HOH HOH . E 4 HOH A 131 713 713 HOH HOH . E 4 HOH A 132 714 714 HOH HOH . E 4 HOH A 133 715 715 HOH HOH . E 4 HOH A 134 716 716 HOH HOH . E 4 HOH A 135 717 717 HOH HOH . E 4 HOH A 136 718 718 HOH HOH . E 4 HOH A 137 719 719 HOH HOH . E 4 HOH A 138 720 720 HOH HOH . E 4 HOH A 139 721 721 HOH HOH . E 4 HOH A 140 722 722 HOH HOH . E 4 HOH A 141 723 723 HOH HOH . E 4 HOH A 142 724 724 HOH HOH . E 4 HOH A 143 725 725 HOH HOH . E 4 HOH A 144 726 726 HOH HOH . E 4 HOH A 145 727 727 HOH HOH . E 4 HOH A 146 728 728 HOH HOH . E 4 HOH A 147 729 729 HOH HOH . E 4 HOH A 148 730 730 HOH HOH . E 4 HOH A 149 731 731 HOH HOH . E 4 HOH A 150 732 732 HOH HOH . E 4 HOH A 151 733 733 HOH HOH . E 4 HOH A 152 734 734 HOH HOH . E 4 HOH A 153 735 735 HOH HOH . E 4 HOH A 154 736 736 HOH HOH . E 4 HOH A 155 737 737 HOH HOH . E 4 HOH A 156 738 738 HOH HOH . E 4 HOH A 157 739 739 HOH HOH . E 4 HOH A 158 740 740 HOH HOH . E 4 HOH A 159 741 741 HOH HOH . E 4 HOH A 160 742 742 HOH HOH . E 4 HOH A 161 743 743 HOH HOH . E 4 HOH A 162 744 744 HOH HOH . E 4 HOH A 163 745 745 HOH HOH . E 4 HOH A 164 746 746 HOH HOH . E 4 HOH A 165 747 747 HOH HOH . E 4 HOH A 166 748 748 HOH HOH . E 4 HOH A 167 749 749 HOH HOH . E 4 HOH A 168 750 750 HOH HOH . E 4 HOH A 169 751 751 HOH HOH . E 4 HOH A 170 752 752 HOH HOH . E 4 HOH A 171 753 753 HOH HOH . E 4 HOH A 172 754 754 HOH HOH . E 4 HOH A 173 755 755 HOH HOH . E 4 HOH A 174 756 756 HOH HOH . E 4 HOH A 175 757 757 HOH HOH . E 4 HOH A 176 758 758 HOH HOH . E 4 HOH A 177 759 759 HOH HOH . E 4 HOH A 178 760 760 HOH HOH . E 4 HOH A 179 761 761 HOH HOH . E 4 HOH A 180 762 762 HOH HOH . E 4 HOH A 181 763 763 HOH HOH . E 4 HOH A 182 764 764 HOH HOH . E 4 HOH A 183 765 765 HOH HOH . E 4 HOH A 184 766 766 HOH HOH . E 4 HOH A 185 767 767 HOH HOH . E 4 HOH A 186 768 768 HOH HOH . E 4 HOH A 187 769 769 HOH HOH . E 4 HOH A 188 770 770 HOH HOH . E 4 HOH A 189 771 771 HOH HOH . E 4 HOH A 190 772 772 HOH HOH . E 4 HOH A 191 773 773 HOH HOH . E 4 HOH A 192 774 774 HOH HOH . E 4 HOH A 193 775 775 HOH HOH . E 4 HOH A 194 776 776 HOH HOH . E 4 HOH A 195 777 777 HOH HOH . E 4 HOH A 196 778 778 HOH HOH . E 4 HOH A 197 779 779 HOH HOH . E 4 HOH A 198 780 780 HOH HOH . E 4 HOH A 199 781 781 HOH HOH . E 4 HOH A 200 782 782 HOH HOH . E 4 HOH A 201 783 783 HOH HOH . E 4 HOH A 202 784 784 HOH HOH . E 4 HOH A 203 785 785 HOH HOH . E 4 HOH A 204 786 786 HOH HOH . E 4 HOH A 205 787 787 HOH HOH . E 4 HOH A 206 788 788 HOH HOH . E 4 HOH A 207 789 789 HOH HOH . E 4 HOH A 208 790 790 HOH HOH . E 4 HOH A 209 791 791 HOH HOH . E 4 HOH A 210 792 792 HOH HOH . E 4 HOH A 211 793 793 HOH HOH . E 4 HOH A 212 794 794 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 49.027 _atom_site.Cartn_y 122.83 _atom_site.Cartn_z 22.877 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 452 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #