data_1JDJ # _model_server_result.job_id hKlwO-Tn97EucglgLD86Tw _model_server_result.datetime_utc '2025-02-05 14:02:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jdj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1JDJ # _exptl.entry_id 1JDJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.415 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTADECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JDJ _cell.length_a 70.3 _cell.length_b 70.3 _cell.length_c 210.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H32' _chem_comp.formula_weight 212.415 _chem_comp.id MYS _chem_comp.mon_nstd_flag . _chem_comp.name PENTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MYS sing 251 n n C1 H11 MYS sing 252 n n C1 H12 MYS sing 253 n n C1 H13 MYS sing 254 n n C2 C3 MYS sing 255 n n C2 H21 MYS sing 256 n n C2 H22 MYS sing 257 n n C3 C4 MYS sing 258 n n C3 H31 MYS sing 259 n n C3 H32 MYS sing 260 n n C4 C5 MYS sing 261 n n C4 H41 MYS sing 262 n n C4 H42 MYS sing 263 n n C5 C6 MYS sing 264 n n C5 H51 MYS sing 265 n n C5 H52 MYS sing 266 n n C6 C7 MYS sing 267 n n C6 H61 MYS sing 268 n n C6 H62 MYS sing 269 n n C7 C8 MYS sing 270 n n C7 H71 MYS sing 271 n n C7 H72 MYS sing 272 n n C8 C9 MYS sing 273 n n C8 H81 MYS sing 274 n n C8 H82 MYS sing 275 n n C9 C10 MYS sing 276 n n C9 H91 MYS sing 277 n n C9 H92 MYS sing 278 n n C10 C11 MYS sing 279 n n C10 H101 MYS sing 280 n n C10 H102 MYS sing 281 n n C11 C12 MYS sing 282 n n C11 H111 MYS sing 283 n n C11 H112 MYS sing 284 n n C12 C13 MYS sing 285 n n C12 H121 MYS sing 286 n n C12 H122 MYS sing 287 n n C13 C14 MYS sing 288 n n C13 H131 MYS sing 289 n n C13 H132 MYS sing 290 n n C14 C15 MYS sing 291 n n C14 H141 MYS sing 292 n n C14 H142 MYS sing 293 n n C15 H151 MYS sing 294 n n C15 H152 MYS sing 295 n n C15 H153 MYS sing 296 n n # _atom_sites.entry_id 1JDJ _atom_sites.fract_transf_matrix[1][1] 0.014225 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CFP A 1 367 361 CFP HET . C 3 MYS A 1 500 500 MYS MYS . D 4 HOH A 1 501 501 HOH TIP . D 4 HOH A 2 502 502 HOH TIP . D 4 HOH A 3 503 503 HOH TIP . D 4 HOH A 4 504 504 HOH TIP . D 4 HOH A 5 505 505 HOH TIP . D 4 HOH A 6 506 506 HOH TIP . D 4 HOH A 7 507 507 HOH TIP . D 4 HOH A 8 508 508 HOH TIP . D 4 HOH A 9 509 509 HOH TIP . D 4 HOH A 10 510 510 HOH TIP . D 4 HOH A 11 511 511 HOH TIP . D 4 HOH A 12 512 512 HOH TIP . D 4 HOH A 13 513 513 HOH TIP . D 4 HOH A 14 514 514 HOH TIP . D 4 HOH A 15 515 515 HOH TIP . D 4 HOH A 16 516 516 HOH TIP . D 4 HOH A 17 517 517 HOH TIP . D 4 HOH A 18 518 518 HOH TIP . D 4 HOH A 19 519 519 HOH TIP . D 4 HOH A 20 520 520 HOH TIP . D 4 HOH A 21 521 521 HOH TIP . D 4 HOH A 22 522 522 HOH TIP . D 4 HOH A 23 523 523 HOH TIP . D 4 HOH A 24 524 524 HOH TIP . D 4 HOH A 25 525 525 HOH TIP . D 4 HOH A 26 526 526 HOH TIP . D 4 HOH A 27 527 527 HOH TIP . D 4 HOH A 28 528 528 HOH TIP . D 4 HOH A 29 529 529 HOH TIP . D 4 HOH A 30 530 530 HOH TIP . D 4 HOH A 31 531 531 HOH TIP . D 4 HOH A 32 532 532 HOH TIP . D 4 HOH A 33 533 533 HOH TIP . D 4 HOH A 34 534 534 HOH TIP . D 4 HOH A 35 535 535 HOH TIP . D 4 HOH A 36 536 536 HOH TIP . D 4 HOH A 37 537 537 HOH TIP . D 4 HOH A 38 538 538 HOH TIP . D 4 HOH A 39 539 539 HOH TIP . D 4 HOH A 40 540 540 HOH TIP . D 4 HOH A 41 541 541 HOH TIP . D 4 HOH A 42 542 542 HOH TIP . D 4 HOH A 43 543 543 HOH TIP . D 4 HOH A 44 544 544 HOH TIP . D 4 HOH A 45 545 545 HOH TIP . D 4 HOH A 46 546 546 HOH TIP . D 4 HOH A 47 547 547 HOH TIP . D 4 HOH A 48 548 548 HOH TIP . D 4 HOH A 49 549 549 HOH TIP . D 4 HOH A 50 550 550 HOH TIP . D 4 HOH A 51 551 551 HOH TIP . D 4 HOH A 52 552 552 HOH TIP . D 4 HOH A 53 553 553 HOH TIP . D 4 HOH A 54 554 554 HOH TIP . D 4 HOH A 55 555 555 HOH TIP . D 4 HOH A 56 556 556 HOH TIP . D 4 HOH A 57 557 557 HOH TIP . D 4 HOH A 58 558 558 HOH TIP . D 4 HOH A 59 559 559 HOH TIP . D 4 HOH A 60 560 560 HOH TIP . D 4 HOH A 61 561 561 HOH TIP . D 4 HOH A 62 562 562 HOH TIP . D 4 HOH A 63 563 563 HOH TIP . D 4 HOH A 64 564 564 HOH TIP . D 4 HOH A 65 565 565 HOH TIP . D 4 HOH A 66 566 566 HOH TIP . D 4 HOH A 67 567 567 HOH TIP . D 4 HOH A 68 568 568 HOH TIP . D 4 HOH A 69 569 569 HOH TIP . D 4 HOH A 70 570 570 HOH TIP . D 4 HOH A 71 571 571 HOH TIP . D 4 HOH A 72 572 572 HOH TIP . D 4 HOH A 73 573 573 HOH TIP . D 4 HOH A 74 574 574 HOH TIP . D 4 HOH A 75 575 575 HOH TIP . D 4 HOH A 76 576 576 HOH TIP . D 4 HOH A 77 577 577 HOH TIP . D 4 HOH A 78 578 578 HOH TIP . D 4 HOH A 79 579 579 HOH TIP . D 4 HOH A 80 580 580 HOH TIP . D 4 HOH A 81 581 581 HOH TIP . D 4 HOH A 82 582 582 HOH TIP . D 4 HOH A 83 583 583 HOH TIP . D 4 HOH A 84 584 584 HOH TIP . D 4 HOH A 85 585 585 HOH TIP . D 4 HOH A 86 586 586 HOH TIP . D 4 HOH A 87 587 587 HOH TIP . D 4 HOH A 88 588 588 HOH TIP . D 4 HOH A 89 589 589 HOH TIP . D 4 HOH A 90 590 590 HOH TIP . D 4 HOH A 91 591 591 HOH TIP . D 4 HOH A 92 592 592 HOH TIP . D 4 HOH A 93 593 593 HOH TIP . D 4 HOH A 94 594 594 HOH TIP . D 4 HOH A 95 595 595 HOH TIP . D 4 HOH A 96 596 596 HOH TIP . D 4 HOH A 97 597 597 HOH TIP . D 4 HOH A 98 598 598 HOH TIP . D 4 HOH A 99 599 599 HOH TIP . D 4 HOH A 100 600 600 HOH TIP . D 4 HOH A 101 601 601 HOH TIP . D 4 HOH A 102 602 602 HOH TIP . D 4 HOH A 103 603 603 HOH TIP . D 4 HOH A 104 604 604 HOH TIP . D 4 HOH A 105 605 605 HOH TIP . D 4 HOH A 106 606 606 HOH TIP . D 4 HOH A 107 607 607 HOH TIP . D 4 HOH A 108 608 608 HOH TIP . D 4 HOH A 109 609 609 HOH TIP . D 4 HOH A 110 610 610 HOH TIP . D 4 HOH A 111 611 611 HOH TIP . D 4 HOH A 112 612 612 HOH TIP . D 4 HOH A 113 613 613 HOH TIP . D 4 HOH A 114 614 614 HOH TIP . D 4 HOH A 115 615 615 HOH TIP . D 4 HOH A 116 616 616 HOH TIP . D 4 HOH A 117 617 617 HOH TIP . D 4 HOH A 118 618 618 HOH TIP . D 4 HOH A 119 619 619 HOH TIP . D 4 HOH A 120 620 620 HOH TIP . D 4 HOH A 121 621 621 HOH TIP . D 4 HOH A 122 622 622 HOH TIP . D 4 HOH A 123 623 623 HOH TIP . D 4 HOH A 124 624 624 HOH TIP . D 4 HOH A 125 625 625 HOH TIP . D 4 HOH A 126 626 626 HOH TIP . D 4 HOH A 127 627 627 HOH TIP . D 4 HOH A 128 628 628 HOH TIP . D 4 HOH A 129 629 629 HOH TIP . D 4 HOH A 130 630 630 HOH TIP . D 4 HOH A 131 631 631 HOH TIP . D 4 HOH A 132 632 632 HOH TIP . D 4 HOH A 133 633 633 HOH TIP . D 4 HOH A 134 634 634 HOH TIP . D 4 HOH A 135 635 635 HOH TIP . D 4 HOH A 136 636 636 HOH TIP . D 4 HOH A 137 637 637 HOH TIP . D 4 HOH A 138 638 638 HOH TIP . D 4 HOH A 139 639 639 HOH TIP . D 4 HOH A 140 640 640 HOH TIP . D 4 HOH A 141 641 641 HOH TIP . D 4 HOH A 142 642 642 HOH TIP . D 4 HOH A 143 643 643 HOH TIP . D 4 HOH A 144 644 644 HOH TIP . D 4 HOH A 145 645 645 HOH TIP . D 4 HOH A 146 646 646 HOH TIP . D 4 HOH A 147 647 647 HOH TIP . D 4 HOH A 148 648 648 HOH TIP . D 4 HOH A 149 649 649 HOH TIP . D 4 HOH A 150 650 650 HOH TIP . D 4 HOH A 151 651 651 HOH TIP . D 4 HOH A 152 652 652 HOH TIP . D 4 HOH A 153 653 653 HOH TIP . D 4 HOH A 154 654 654 HOH TIP . D 4 HOH A 155 655 655 HOH TIP . D 4 HOH A 156 656 656 HOH TIP . D 4 HOH A 157 657 657 HOH TIP . D 4 HOH A 158 658 658 HOH TIP . D 4 HOH A 159 659 659 HOH TIP . D 4 HOH A 160 660 660 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYS . . . C 3 41.232 65.53 -5.988 1 54.53 ? C1 MYS 500 A 1 HETATM 2 C C2 MYS . . . C 3 41.945 64.22 -6.29 1 40.68 ? C2 MYS 500 A 1 HETATM 3 C C3 MYS . . . C 3 41.02 63.269 -7.04 1 53.98 ? C3 MYS 500 A 1 HETATM 4 C C4 MYS . . . C 3 40.652 62.088 -6.155 1 41.6 ? C4 MYS 500 A 1 HETATM 5 C C5 MYS . . . C 3 40.643 60.799 -6.96 1 36.39 ? C5 MYS 500 A 1 HETATM 6 C C6 MYS . . . C 3 40.236 59.636 -6.066 1 35.35 ? C6 MYS 500 A 1 HETATM 7 C C7 MYS . . . C 3 39.96 58.392 -6.901 1 29.76 ? C7 MYS 500 A 1 HETATM 8 C C8 MYS . . . C 3 39.631 57.211 -5.995 1 27.12 ? C8 MYS 500 A 1 HETATM 9 C C9 MYS . . . C 3 38.174 56.799 -6.175 1 37.57 ? C9 MYS 500 A 1 HETATM 10 C C10 MYS . . . C 3 37.802 55.696 -5.186 1 37.35 ? C10 MYS 500 A 1 HETATM 11 C C11 MYS . . . C 3 36.285 55.515 -5.111 1 26.73 ? C11 MYS 500 A 1 HETATM 12 C C12 MYS . . . C 3 35.658 56.628 -4.273 1 43.82 ? C12 MYS 500 A 1 HETATM 13 C C13 MYS . . . C 3 34.792 56.059 -3.158 1 31.95 ? C13 MYS 500 A 1 HETATM 14 C C14 MYS . . . C 3 33.602 56.975 -2.903 1 42.52 ? C14 MYS 500 A 1 HETATM 15 C C15 MYS . . . C 3 33.879 57.904 -1.728 1 35.8 ? C15 MYS 500 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 15 #