data_1JDZ # _model_server_result.job_id XMqejmzANJEtVWccFrY0IQ _model_server_result.datetime_utc '2024-10-12 06:17:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jdz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":260}' # _entry.id 1JDZ # _exptl.entry_id 1JDZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JDZ _cell.length_a 102.6 _cell.length_b 176.9 _cell.length_c 87.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JDZ _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 102.6 0 43.65 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 C SG CYS 125 C CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 125 B CYS 125 1_555 B SG CYS 125 B CYS 125 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 323 n n S O2 SO4 doub 324 n n S O3 SO4 sing 325 n n S O4 SO4 sing 326 n n # _atom_sites.entry_id 1JDZ _atom_sites.fract_transf_matrix[1][1] 0.009747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 250 250 SO4 SO4 . E 3 FMB A 1 270 270 FMB FMB . F 2 SO4 B 1 255 255 SO4 SO4 . G 3 FMB B 1 275 275 FMB FMB . H 2 SO4 C 1 260 260 SO4 SO4 . I 3 FMB C 1 280 280 FMB FMB . J 4 HOH A 1 271 1 HOH HOH . J 4 HOH A 2 272 2 HOH HOH . J 4 HOH A 3 273 4 HOH HOH . J 4 HOH A 4 274 6 HOH HOH . J 4 HOH A 5 275 7 HOH HOH . J 4 HOH A 6 276 8 HOH HOH . J 4 HOH A 7 277 12 HOH HOH . J 4 HOH A 8 278 13 HOH HOH . J 4 HOH A 9 279 16 HOH HOH . J 4 HOH A 10 280 17 HOH HOH . J 4 HOH A 11 281 22 HOH HOH . J 4 HOH A 12 282 26 HOH HOH . J 4 HOH A 13 283 29 HOH HOH . J 4 HOH A 14 284 30 HOH HOH . J 4 HOH A 15 285 35 HOH HOH . J 4 HOH A 16 286 37 HOH HOH . J 4 HOH A 17 287 38 HOH HOH . J 4 HOH A 18 288 39 HOH HOH . J 4 HOH A 19 289 46 HOH HOH . J 4 HOH A 20 290 50 HOH HOH . J 4 HOH A 21 291 52 HOH HOH . J 4 HOH A 22 292 54 HOH HOH . J 4 HOH A 23 293 56 HOH HOH . J 4 HOH A 24 294 57 HOH HOH . J 4 HOH A 25 295 63 HOH HOH . J 4 HOH A 26 296 64 HOH HOH . J 4 HOH A 27 297 66 HOH HOH . J 4 HOH A 28 298 70 HOH HOH . J 4 HOH A 29 299 72 HOH HOH . J 4 HOH A 30 300 78 HOH HOH . J 4 HOH A 31 301 79 HOH HOH . J 4 HOH A 32 302 85 HOH HOH . J 4 HOH A 33 303 87 HOH HOH . J 4 HOH A 34 304 91 HOH HOH . J 4 HOH A 35 305 96 HOH HOH . J 4 HOH A 36 306 98 HOH HOH . J 4 HOH A 37 307 102 HOH HOH . J 4 HOH A 38 308 103 HOH HOH . J 4 HOH A 39 309 105 HOH HOH . J 4 HOH A 40 310 106 HOH HOH . J 4 HOH A 41 311 112 HOH HOH . J 4 HOH A 42 312 120 HOH HOH . J 4 HOH A 43 313 121 HOH HOH . J 4 HOH A 44 314 122 HOH HOH . J 4 HOH A 45 315 123 HOH HOH . J 4 HOH A 46 316 124 HOH HOH . J 4 HOH A 47 317 125 HOH HOH . J 4 HOH A 48 318 127 HOH HOH . J 4 HOH A 49 319 130 HOH HOH . J 4 HOH A 50 320 138 HOH HOH . J 4 HOH A 51 321 140 HOH HOH . J 4 HOH A 52 322 145 HOH HOH . K 4 HOH B 1 276 11 HOH HOH . K 4 HOH B 2 277 14 HOH HOH . K 4 HOH B 3 278 19 HOH HOH . K 4 HOH B 4 279 20 HOH HOH . K 4 HOH B 5 280 23 HOH HOH . K 4 HOH B 6 281 24 HOH HOH . K 4 HOH B 7 282 31 HOH HOH . K 4 HOH B 8 283 32 HOH HOH . K 4 HOH B 9 284 34 HOH HOH . K 4 HOH B 10 285 36 HOH HOH . K 4 HOH B 11 286 41 HOH HOH . K 4 HOH B 12 287 42 HOH HOH . K 4 HOH B 13 288 48 HOH HOH . K 4 HOH B 14 289 49 HOH HOH . K 4 HOH B 15 290 51 HOH HOH . K 4 HOH B 16 291 59 HOH HOH . K 4 HOH B 17 292 60 HOH HOH . K 4 HOH B 18 293 61 HOH HOH . K 4 HOH B 19 294 62 HOH HOH . K 4 HOH B 20 295 68 HOH HOH . K 4 HOH B 21 296 71 HOH HOH . K 4 HOH B 22 297 73 HOH HOH . K 4 HOH B 23 298 74 HOH HOH . K 4 HOH B 24 299 75 HOH HOH . K 4 HOH B 25 300 76 HOH HOH . K 4 HOH B 26 301 77 HOH HOH . K 4 HOH B 27 302 80 HOH HOH . K 4 HOH B 28 303 81 HOH HOH . K 4 HOH B 29 304 82 HOH HOH . K 4 HOH B 30 305 83 HOH HOH . K 4 HOH B 31 306 84 HOH HOH . K 4 HOH B 32 307 86 HOH HOH . K 4 HOH B 33 308 90 HOH HOH . K 4 HOH B 34 309 93 HOH HOH . K 4 HOH B 35 310 99 HOH HOH . K 4 HOH B 36 311 101 HOH HOH . K 4 HOH B 37 312 107 HOH HOH . K 4 HOH B 38 313 108 HOH HOH . K 4 HOH B 39 314 111 HOH HOH . K 4 HOH B 40 315 114 HOH HOH . K 4 HOH B 41 316 115 HOH HOH . K 4 HOH B 42 317 118 HOH HOH . K 4 HOH B 43 318 126 HOH HOH . K 4 HOH B 44 319 128 HOH HOH . K 4 HOH B 45 320 129 HOH HOH . K 4 HOH B 46 321 131 HOH HOH . K 4 HOH B 47 322 133 HOH HOH . K 4 HOH B 48 323 134 HOH HOH . K 4 HOH B 49 324 136 HOH HOH . K 4 HOH B 50 325 139 HOH HOH . K 4 HOH B 51 326 142 HOH HOH . K 4 HOH B 52 327 143 HOH HOH . L 4 HOH C 1 281 3 HOH HOH . L 4 HOH C 2 282 5 HOH HOH . L 4 HOH C 3 283 9 HOH HOH . L 4 HOH C 4 284 10 HOH HOH . L 4 HOH C 5 285 15 HOH HOH . L 4 HOH C 6 286 18 HOH HOH . L 4 HOH C 7 287 21 HOH HOH . L 4 HOH C 8 288 25 HOH HOH . L 4 HOH C 9 289 27 HOH HOH . L 4 HOH C 10 290 28 HOH HOH . L 4 HOH C 11 291 33 HOH HOH . L 4 HOH C 12 292 40 HOH HOH . L 4 HOH C 13 293 43 HOH HOH . L 4 HOH C 14 294 44 HOH HOH . L 4 HOH C 15 295 45 HOH HOH . L 4 HOH C 16 296 47 HOH HOH . L 4 HOH C 17 297 53 HOH HOH . L 4 HOH C 18 298 55 HOH HOH . L 4 HOH C 19 299 58 HOH HOH . L 4 HOH C 20 300 65 HOH HOH . L 4 HOH C 21 301 67 HOH HOH . L 4 HOH C 22 302 69 HOH HOH . L 4 HOH C 23 303 88 HOH HOH . L 4 HOH C 24 304 89 HOH HOH . L 4 HOH C 25 305 92 HOH HOH . L 4 HOH C 26 306 94 HOH HOH . L 4 HOH C 27 307 95 HOH HOH . L 4 HOH C 28 308 97 HOH HOH . L 4 HOH C 29 309 100 HOH HOH . L 4 HOH C 30 310 104 HOH HOH . L 4 HOH C 31 311 109 HOH HOH . L 4 HOH C 32 312 110 HOH HOH . L 4 HOH C 33 313 113 HOH HOH . L 4 HOH C 34 314 116 HOH HOH . L 4 HOH C 35 315 117 HOH HOH . L 4 HOH C 36 316 119 HOH HOH . L 4 HOH C 37 317 132 HOH HOH . L 4 HOH C 38 318 135 HOH HOH . L 4 HOH C 39 319 137 HOH HOH . L 4 HOH C 40 320 141 HOH HOH . L 4 HOH C 41 321 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 2 81.053 122.999 21.044 1 50.28 ? S SO4 260 C 1 HETATM 2 O O1 SO4 . . . H 2 82.107 122.552 20.081 1 50.08 ? O1 SO4 260 C 1 HETATM 3 O O2 SO4 . . . H 2 80.213 124.039 20.415 1 49.72 ? O2 SO4 260 C 1 HETATM 4 O O3 SO4 . . . H 2 80.229 121.82 21.431 1 50.69 ? O3 SO4 260 C 1 HETATM 5 O O4 SO4 . . . H 2 81.711 123.551 22.255 1 50.05 ? O4 SO4 260 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #