data_1JEB # _model_server_result.job_id Z2jRnIQyApsWDs2GB2CIbA _model_server_result.datetime_utc '2024-11-04 22:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jeb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":143}' # _entry.id 1JEB # _exptl.entry_id 1JEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 28.01 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBON MONOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JEB _cell.length_a 84.921 _cell.length_b 84.921 _cell.length_c 104.523 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 J N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale2 C C ACE 1 C ACE 0 1_555 C N SER 2 C SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? metalc ? metalc1 A NE2 HIS 88 A HIS 87 1_555 E FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 E FE HEM . A HEM 142 1_555 F C CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? metalc ? metalc3 E FE HEM . A HEM 142 1_555 F O CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc5 G FE HEM . B HEM 147 1_555 H C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? metalc ? metalc6 G FE HEM . B HEM 147 1_555 H O CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc7 C NE2 HIS 88 C HIS 87 1_555 I FE HEM . C HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc8 I FE HEM . C HEM 142 1_555 J C CMO . C CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc9 I FE HEM . C HEM 142 1_555 J O CMO . C CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc10 D NE2 HIS 92 D HIS 92 1_555 K FE HEM . D HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc11 K FE HEM . D HEM 147 1_555 L C CMO . D CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc12 K FE HEM . D HEM 147 1_555 L O CMO . D CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? # _chem_comp.formula 'C O' _chem_comp.formula_weight 28.01 _chem_comp.id CMO _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBON MONOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 O _chem_comp_bond.comp_id CMO _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 76 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 1JEB _atom_sites.fract_transf_matrix[1][1] 0.011776 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 142 142 HEM HEM . F 4 CMO A 1 143 143 CMO CMO . G 3 HEM B 1 147 147 HEM HEM . H 4 CMO B 1 148 148 CMO HEM . I 3 HEM C 1 142 142 HEM HEM . J 4 CMO C 1 143 143 CMO CMO . K 3 HEM D 1 147 147 HEM HEM . L 4 CMO D 1 148 148 CMO CMO . M 5 HOH A 1 210 210 HOH HOH . M 5 HOH A 2 214 214 HOH HOH . M 5 HOH A 3 216 216 HOH HOH . M 5 HOH A 4 218 218 HOH HOH . M 5 HOH A 5 221 221 HOH HOH . M 5 HOH A 6 234 234 HOH HOH . M 5 HOH A 7 238 238 HOH HOH . M 5 HOH A 8 241 241 HOH HOH . M 5 HOH A 9 247 247 HOH HOH . M 5 HOH A 10 249 249 HOH HOH . M 5 HOH A 11 252 252 HOH HOH . M 5 HOH A 12 258 258 HOH HOH . M 5 HOH A 13 260 260 HOH HOH . M 5 HOH A 14 261 261 HOH HOH . M 5 HOH A 15 263 263 HOH HOH . M 5 HOH A 16 269 269 HOH HOH . M 5 HOH A 17 271 271 HOH HOH . M 5 HOH A 18 276 276 HOH HOH . M 5 HOH A 19 277 277 HOH HOH . M 5 HOH A 20 278 278 HOH HOH . M 5 HOH A 21 279 279 HOH HOH . M 5 HOH A 22 287 287 HOH HOH . M 5 HOH A 23 288 288 HOH HOH . M 5 HOH A 24 300 300 HOH HOH . M 5 HOH A 25 302 302 HOH HOH . M 5 HOH A 26 303 303 HOH HOH . M 5 HOH A 27 304 304 HOH HOH . M 5 HOH A 28 309 309 HOH HOH . M 5 HOH A 29 311 311 HOH HOH . M 5 HOH A 30 312 312 HOH HOH . M 5 HOH A 31 313 313 HOH HOH . M 5 HOH A 32 315 315 HOH HOH . M 5 HOH A 33 317 317 HOH HOH . M 5 HOH A 34 319 319 HOH HOH . M 5 HOH A 35 332 332 HOH HOH . M 5 HOH A 36 341 341 HOH HOH . M 5 HOH A 37 343 343 HOH HOH . M 5 HOH A 38 355 355 HOH HOH . M 5 HOH A 39 356 356 HOH HOH . M 5 HOH A 40 364 364 HOH HOH . M 5 HOH A 41 371 371 HOH HOH . M 5 HOH A 42 373 373 HOH HOH . M 5 HOH A 43 378 378 HOH HOH . M 5 HOH A 44 381 381 HOH HOH . M 5 HOH A 45 393 393 HOH HOH . M 5 HOH A 46 396 396 HOH HOH . M 5 HOH A 47 403 403 HOH HOH . M 5 HOH A 48 406 406 HOH HOH . M 5 HOH A 49 407 407 HOH HOH . M 5 HOH A 50 413 413 HOH HOH . M 5 HOH A 51 416 416 HOH HOH . M 5 HOH A 52 418 418 HOH HOH . M 5 HOH A 53 419 419 HOH HOH . M 5 HOH A 54 422 422 HOH HOH . M 5 HOH A 55 426 426 HOH HOH . N 5 HOH B 1 268 268 HOH HOH . N 5 HOH B 2 274 274 HOH HOH . N 5 HOH B 3 294 294 HOH HOH . N 5 HOH B 4 307 307 HOH HOH . N 5 HOH B 5 316 316 HOH HOH . N 5 HOH B 6 320 320 HOH HOH . N 5 HOH B 7 324 324 HOH HOH . N 5 HOH B 8 331 331 HOH HOH . N 5 HOH B 9 340 340 HOH HOH . N 5 HOH B 10 342 342 HOH HOH . N 5 HOH B 11 354 354 HOH HOH . N 5 HOH B 12 358 358 HOH HOH . N 5 HOH B 13 363 363 HOH HOH . N 5 HOH B 14 369 369 HOH HOH . N 5 HOH B 15 390 390 HOH HOH . N 5 HOH B 16 394 394 HOH HOH . N 5 HOH B 17 405 405 HOH HOH . N 5 HOH B 18 414 414 HOH HOH . N 5 HOH B 19 424 424 HOH HOH . N 5 HOH B 20 429 429 HOH HOH . N 5 HOH B 21 432 432 HOH HOH . O 5 HOH C 1 200 200 HOH HOH . O 5 HOH C 2 201 201 HOH HOH . O 5 HOH C 3 206 206 HOH HOH . O 5 HOH C 4 207 207 HOH HOH . O 5 HOH C 5 208 208 HOH HOH . O 5 HOH C 6 209 209 HOH HOH . O 5 HOH C 7 213 213 HOH HOH . O 5 HOH C 8 217 217 HOH HOH . O 5 HOH C 9 224 224 HOH HOH . O 5 HOH C 10 226 226 HOH HOH . O 5 HOH C 11 230 230 HOH HOH . O 5 HOH C 12 231 231 HOH HOH . O 5 HOH C 13 232 232 HOH HOH . O 5 HOH C 14 236 236 HOH HOH . O 5 HOH C 15 239 239 HOH HOH . O 5 HOH C 16 244 244 HOH HOH . O 5 HOH C 17 246 246 HOH HOH . O 5 HOH C 18 251 251 HOH HOH . O 5 HOH C 19 253 253 HOH HOH . O 5 HOH C 20 254 254 HOH HOH . O 5 HOH C 21 255 255 HOH HOH . O 5 HOH C 22 256 256 HOH HOH . O 5 HOH C 23 265 265 HOH HOH . O 5 HOH C 24 270 270 HOH HOH . O 5 HOH C 25 272 272 HOH HOH . O 5 HOH C 26 283 283 HOH HOH . O 5 HOH C 27 290 290 HOH HOH . O 5 HOH C 28 292 292 HOH HOH . O 5 HOH C 29 296 296 HOH HOH . O 5 HOH C 30 298 298 HOH HOH . O 5 HOH C 31 299 299 HOH HOH . O 5 HOH C 32 306 306 HOH HOH . O 5 HOH C 33 310 310 HOH HOH . O 5 HOH C 34 326 326 HOH HOH . O 5 HOH C 35 327 327 HOH HOH . O 5 HOH C 36 329 329 HOH HOH . O 5 HOH C 37 333 333 HOH HOH . O 5 HOH C 38 338 338 HOH HOH . O 5 HOH C 39 344 344 HOH HOH . O 5 HOH C 40 347 347 HOH HOH . O 5 HOH C 41 348 348 HOH HOH . O 5 HOH C 42 359 359 HOH HOH . O 5 HOH C 43 360 360 HOH HOH . O 5 HOH C 44 365 365 HOH HOH . O 5 HOH C 45 366 366 HOH HOH . O 5 HOH C 46 367 367 HOH HOH . O 5 HOH C 47 368 368 HOH HOH . O 5 HOH C 48 372 372 HOH HOH . O 5 HOH C 49 376 376 HOH HOH . O 5 HOH C 50 382 382 HOH HOH . O 5 HOH C 51 383 383 HOH HOH . O 5 HOH C 52 386 386 HOH HOH . O 5 HOH C 53 391 391 HOH HOH . O 5 HOH C 54 392 392 HOH HOH . O 5 HOH C 55 395 395 HOH HOH . O 5 HOH C 56 397 397 HOH HOH . O 5 HOH C 57 398 398 HOH HOH . O 5 HOH C 58 399 399 HOH HOH . O 5 HOH C 59 401 401 HOH HOH . O 5 HOH C 60 408 408 HOH HOH . O 5 HOH C 61 411 411 HOH HOH . O 5 HOH C 62 412 412 HOH HOH . O 5 HOH C 63 415 415 HOH HOH . O 5 HOH C 64 421 421 HOH HOH . O 5 HOH C 65 428 428 HOH HOH . O 5 HOH C 66 433 433 HOH HOH . P 5 HOH D 1 202 202 HOH HOH . P 5 HOH D 2 203 203 HOH HOH . P 5 HOH D 3 204 204 HOH HOH . P 5 HOH D 4 205 205 HOH HOH . P 5 HOH D 5 211 211 HOH HOH . P 5 HOH D 6 212 212 HOH HOH . P 5 HOH D 7 215 215 HOH HOH . P 5 HOH D 8 219 219 HOH HOH . P 5 HOH D 9 220 220 HOH HOH . P 5 HOH D 10 222 222 HOH HOH . P 5 HOH D 11 223 223 HOH HOH . P 5 HOH D 12 225 225 HOH HOH . P 5 HOH D 13 227 227 HOH HOH . P 5 HOH D 14 228 228 HOH HOH . P 5 HOH D 15 229 229 HOH HOH . P 5 HOH D 16 233 233 HOH HOH . P 5 HOH D 17 235 235 HOH HOH . P 5 HOH D 18 237 237 HOH HOH . P 5 HOH D 19 240 240 HOH HOH . P 5 HOH D 20 242 242 HOH HOH . P 5 HOH D 21 243 243 HOH HOH . P 5 HOH D 22 245 245 HOH HOH . P 5 HOH D 23 248 248 HOH HOH . P 5 HOH D 24 250 250 HOH HOH . P 5 HOH D 25 257 257 HOH HOH . P 5 HOH D 26 259 259 HOH HOH . P 5 HOH D 27 262 262 HOH HOH . P 5 HOH D 28 264 264 HOH HOH . P 5 HOH D 29 266 266 HOH HOH . P 5 HOH D 30 267 267 HOH HOH . P 5 HOH D 31 273 273 HOH HOH . P 5 HOH D 32 275 275 HOH HOH . P 5 HOH D 33 280 280 HOH HOH . P 5 HOH D 34 281 281 HOH HOH . P 5 HOH D 35 282 282 HOH HOH . P 5 HOH D 36 284 284 HOH HOH . P 5 HOH D 37 285 285 HOH HOH . P 5 HOH D 38 286 286 HOH HOH . P 5 HOH D 39 289 289 HOH HOH . P 5 HOH D 40 291 291 HOH HOH . P 5 HOH D 41 293 293 HOH HOH . P 5 HOH D 42 295 295 HOH HOH . P 5 HOH D 43 297 297 HOH HOH . P 5 HOH D 44 301 301 HOH HOH . P 5 HOH D 45 305 305 HOH HOH . P 5 HOH D 46 308 308 HOH HOH . P 5 HOH D 47 314 314 HOH HOH . P 5 HOH D 48 318 318 HOH HOH . P 5 HOH D 49 321 321 HOH HOH . P 5 HOH D 50 322 322 HOH HOH . P 5 HOH D 51 323 323 HOH HOH . P 5 HOH D 52 325 325 HOH HOH . P 5 HOH D 53 328 328 HOH HOH . P 5 HOH D 54 330 330 HOH HOH . P 5 HOH D 55 334 334 HOH HOH . P 5 HOH D 56 335 335 HOH HOH . P 5 HOH D 57 336 336 HOH HOH . P 5 HOH D 58 337 337 HOH HOH . P 5 HOH D 59 339 339 HOH HOH . P 5 HOH D 60 345 345 HOH HOH . P 5 HOH D 61 346 346 HOH HOH . P 5 HOH D 62 349 349 HOH HOH . P 5 HOH D 63 350 350 HOH HOH . P 5 HOH D 64 351 351 HOH HOH . P 5 HOH D 65 352 352 HOH HOH . P 5 HOH D 66 353 353 HOH HOH . P 5 HOH D 67 357 357 HOH HOH . P 5 HOH D 68 361 361 HOH HOH . P 5 HOH D 69 362 362 HOH HOH . P 5 HOH D 70 370 370 HOH HOH . P 5 HOH D 71 374 374 HOH HOH . P 5 HOH D 72 375 375 HOH HOH . P 5 HOH D 73 377 377 HOH HOH . P 5 HOH D 74 379 379 HOH HOH . P 5 HOH D 75 380 380 HOH HOH . P 5 HOH D 76 384 384 HOH HOH . P 5 HOH D 77 385 385 HOH HOH . P 5 HOH D 78 387 387 HOH HOH . P 5 HOH D 79 388 388 HOH HOH . P 5 HOH D 80 389 389 HOH HOH . P 5 HOH D 81 400 400 HOH HOH . P 5 HOH D 82 402 402 HOH HOH . P 5 HOH D 83 404 404 HOH HOH . P 5 HOH D 84 409 409 HOH HOH . P 5 HOH D 85 410 410 HOH HOH . P 5 HOH D 86 417 417 HOH HOH . P 5 HOH D 87 420 420 HOH HOH . P 5 HOH D 88 423 423 HOH HOH . P 5 HOH D 89 425 425 HOH HOH . P 5 HOH D 90 427 427 HOH HOH . P 5 HOH D 91 430 430 HOH HOH . P 5 HOH D 92 431 431 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CMO . . . J 4 -18.692 19.785 -9.145 1 69.58 ? C CMO 143 C 1 HETATM 2 O O CMO . . . J 4 -18.875 19.553 -8.057 1 68.64 ? O CMO 143 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #