data_1JEF # _model_server_result.job_id SlpzP_rEC221QVjJm_J0pQ _model_server_result.datetime_utc '2025-02-26 17:57:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":217}' # _entry.id 1JEF # _exptl.entry_id 1JEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.1 _cell.angle_gamma 90 _cell.entry_id 1JEF _cell.length_a 87.49 _cell.length_b 32.94 _cell.length_c 49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 132 NAG 2 n B NAG 2 B 2 NAG ? 131 NAG 2 n B NAG 3 B 3 NAG ? 130 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale2 B O4 NAG . B NAG 2 1_555 B C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 1JEF _atom_sites.fract_transf_matrix[1][1] 0.01143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006362 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 217 217 SO4 SO4 . D 4 HOH A 1 133 133 HOH HOH . D 4 HOH A 2 134 134 HOH HOH . D 4 HOH A 3 135 135 HOH HOH . D 4 HOH A 4 136 136 HOH HOH . D 4 HOH A 5 137 137 HOH HOH . D 4 HOH A 6 138 138 HOH HOH . D 4 HOH A 7 139 139 HOH HOH . D 4 HOH A 8 140 140 HOH HOH . D 4 HOH A 9 141 141 HOH HOH . D 4 HOH A 10 142 142 HOH HOH . D 4 HOH A 11 143 143 HOH HOH . D 4 HOH A 12 144 144 HOH HOH . D 4 HOH A 13 145 145 HOH HOH . D 4 HOH A 14 146 146 HOH HOH . D 4 HOH A 15 147 147 HOH HOH . D 4 HOH A 16 148 148 HOH HOH . D 4 HOH A 17 149 149 HOH HOH . D 4 HOH A 18 150 150 HOH HOH . D 4 HOH A 19 151 151 HOH HOH . D 4 HOH A 20 152 152 HOH HOH . D 4 HOH A 21 153 153 HOH HOH . D 4 HOH A 22 154 154 HOH HOH . D 4 HOH A 23 155 155 HOH HOH . D 4 HOH A 24 156 156 HOH HOH . D 4 HOH A 25 157 157 HOH HOH . D 4 HOH A 26 158 158 HOH HOH . D 4 HOH A 27 159 159 HOH HOH . D 4 HOH A 28 160 160 HOH HOH . D 4 HOH A 29 161 161 HOH HOH . D 4 HOH A 30 162 162 HOH HOH . D 4 HOH A 31 163 163 HOH HOH . D 4 HOH A 32 164 164 HOH HOH . D 4 HOH A 33 165 165 HOH HOH . D 4 HOH A 34 166 166 HOH HOH . D 4 HOH A 35 167 167 HOH HOH . D 4 HOH A 36 168 168 HOH HOH . D 4 HOH A 37 169 169 HOH HOH . D 4 HOH A 38 170 170 HOH HOH . D 4 HOH A 39 171 171 HOH HOH . D 4 HOH A 40 172 172 HOH HOH . D 4 HOH A 41 173 173 HOH HOH . D 4 HOH A 42 174 174 HOH HOH . D 4 HOH A 43 175 175 HOH HOH . D 4 HOH A 44 176 176 HOH HOH . D 4 HOH A 45 177 177 HOH HOH . D 4 HOH A 46 178 178 HOH HOH . D 4 HOH A 47 179 179 HOH HOH . D 4 HOH A 48 180 180 HOH HOH . D 4 HOH A 49 181 181 HOH HOH . D 4 HOH A 50 182 182 HOH HOH . D 4 HOH A 51 183 183 HOH HOH . D 4 HOH A 52 184 184 HOH HOH . D 4 HOH A 53 185 185 HOH HOH . D 4 HOH A 54 186 186 HOH HOH . D 4 HOH A 55 187 187 HOH HOH . D 4 HOH A 56 188 188 HOH HOH . D 4 HOH A 57 189 189 HOH HOH . D 4 HOH A 58 190 190 HOH HOH . D 4 HOH A 59 191 191 HOH HOH . D 4 HOH A 60 192 192 HOH HOH . D 4 HOH A 61 193 193 HOH HOH . D 4 HOH A 62 194 194 HOH HOH . D 4 HOH A 63 195 195 HOH HOH . D 4 HOH A 64 196 196 HOH HOH . D 4 HOH A 65 197 197 HOH HOH . D 4 HOH A 66 198 198 HOH HOH . D 4 HOH A 67 199 199 HOH HOH . D 4 HOH A 68 200 200 HOH HOH . D 4 HOH A 69 201 201 HOH HOH . D 4 HOH A 70 202 202 HOH HOH . D 4 HOH A 71 203 203 HOH HOH . D 4 HOH A 72 204 204 HOH HOH . D 4 HOH A 73 205 205 HOH HOH . D 4 HOH A 74 206 206 HOH HOH . D 4 HOH A 75 207 207 HOH HOH . D 4 HOH A 76 208 208 HOH HOH . D 4 HOH A 77 209 209 HOH HOH . D 4 HOH A 78 210 210 HOH HOH . D 4 HOH A 79 211 211 HOH HOH . D 4 HOH A 80 212 212 HOH HOH . D 4 HOH A 81 213 213 HOH HOH . D 4 HOH A 82 214 214 HOH HOH . D 4 HOH A 83 215 215 HOH HOH . D 4 HOH A 84 216 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 3 -12.047 15.939 21.469 0.5 7.68 ? S SO4 217 A 1 HETATM 2 O O1 SO4 . . . C 3 -12.167 14.494 21.409 0.5 9.01 ? O1 SO4 217 A 1 HETATM 3 O O2 SO4 . . . C 3 -12.708 16.534 20.324 0.5 9.99 ? O2 SO4 217 A 1 HETATM 4 O O3 SO4 . . . C 3 -12.665 16.442 22.685 0.5 13.87 ? O3 SO4 217 A 1 HETATM 5 O O4 SO4 . . . C 3 -10.648 16.307 21.466 0.5 11.58 ? O4 SO4 217 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #