data_1JEO # _model_server_result.job_id nPlLqU1FFo8dj0n76o0F7A _model_server_result.datetime_utc '2024-12-21 15:34:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jeo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":3000}' # _entry.id 1JEO # _exptl.entry_id 1JEO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JEO _cell.length_a 67.921 _cell.length_b 68.155 _cell.length_c 83.336 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JEO _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 67.921 136.31 0 3 'crystal symmetry operation' 3_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 67.921 0 166.672 4 'crystal symmetry operation' 4_577 x,-y+2,-z+2 1 0 0 0 -1 0 0 0 -1 0 136.31 166.672 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 116 A VAL 116 1_555 A N CME 117 A CME 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C CME 117 A CME 117 1_555 A N GLU 118 A GLU 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C GLU 118 A GLU 118 1_555 A N CME 119 A CME 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C CME 119 A CME 119 1_555 A N GLY 120 A GLY 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C HIS 176 A HIS 176 1_555 A N CME 177 A CME 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C CME 177 A CME 177 1_555 A N ASN 178 A ASN 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 1JEO _atom_sites.fract_transf_matrix[1][1] 0.014723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 3000 3000 CIT CIT . C 3 HOH A 1 3001 1 HOH HOH . C 3 HOH A 2 3002 3 HOH HOH . C 3 HOH A 3 3003 4 HOH HOH . C 3 HOH A 4 3004 5 HOH HOH . C 3 HOH A 5 3005 6 HOH HOH . C 3 HOH A 6 3006 7 HOH HOH . C 3 HOH A 7 3007 8 HOH HOH . C 3 HOH A 8 3008 9 HOH HOH . C 3 HOH A 9 3009 10 HOH HOH . C 3 HOH A 10 3010 11 HOH HOH . C 3 HOH A 11 3011 12 HOH HOH . C 3 HOH A 12 3012 13 HOH HOH . C 3 HOH A 13 3013 14 HOH HOH . C 3 HOH A 14 3014 15 HOH HOH . C 3 HOH A 15 3015 16 HOH HOH . C 3 HOH A 16 3016 17 HOH HOH . C 3 HOH A 17 3017 18 HOH HOH . C 3 HOH A 18 3018 19 HOH HOH . C 3 HOH A 19 3019 21 HOH HOH . C 3 HOH A 20 3020 22 HOH HOH . C 3 HOH A 21 3021 24 HOH HOH . C 3 HOH A 22 3022 25 HOH HOH . C 3 HOH A 23 3023 26 HOH HOH . C 3 HOH A 24 3024 27 HOH HOH . C 3 HOH A 25 3025 28 HOH HOH . C 3 HOH A 26 3026 29 HOH HOH . C 3 HOH A 27 3027 30 HOH HOH . C 3 HOH A 28 3028 31 HOH HOH . C 3 HOH A 29 3029 33 HOH HOH . C 3 HOH A 30 3030 34 HOH HOH . C 3 HOH A 31 3031 35 HOH HOH . C 3 HOH A 32 3032 36 HOH HOH . C 3 HOH A 33 3033 37 HOH HOH . C 3 HOH A 34 3034 38 HOH HOH . C 3 HOH A 35 3035 39 HOH HOH . C 3 HOH A 36 3036 40 HOH HOH . C 3 HOH A 37 3037 41 HOH HOH . C 3 HOH A 38 3038 42 HOH HOH . C 3 HOH A 39 3039 43 HOH HOH . C 3 HOH A 40 3040 44 HOH HOH . C 3 HOH A 41 3041 45 HOH HOH . C 3 HOH A 42 3042 46 HOH HOH . C 3 HOH A 43 3043 47 HOH HOH . C 3 HOH A 44 3044 48 HOH HOH . C 3 HOH A 45 3045 49 HOH HOH . C 3 HOH A 46 3046 50 HOH HOH . C 3 HOH A 47 3047 51 HOH HOH . C 3 HOH A 48 3048 52 HOH HOH . C 3 HOH A 49 3049 53 HOH HOH . C 3 HOH A 50 3050 54 HOH HOH . C 3 HOH A 51 3051 58 HOH HOH . C 3 HOH A 52 3052 59 HOH HOH . C 3 HOH A 53 3053 60 HOH HOH . C 3 HOH A 54 3054 61 HOH HOH . C 3 HOH A 55 3055 62 HOH HOH . C 3 HOH A 56 3056 63 HOH HOH . C 3 HOH A 57 3057 64 HOH HOH . C 3 HOH A 58 3058 66 HOH HOH . C 3 HOH A 59 3059 67 HOH HOH . C 3 HOH A 60 3060 68 HOH HOH . C 3 HOH A 61 3061 69 HOH HOH . C 3 HOH A 62 3062 70 HOH HOH . C 3 HOH A 63 3063 71 HOH HOH . C 3 HOH A 64 3064 72 HOH HOH . C 3 HOH A 65 3065 73 HOH HOH . C 3 HOH A 66 3066 74 HOH HOH . C 3 HOH A 67 3067 75 HOH HOH . C 3 HOH A 68 3068 76 HOH HOH . C 3 HOH A 69 3069 77 HOH HOH . C 3 HOH A 70 3070 78 HOH HOH . C 3 HOH A 71 3071 79 HOH HOH . C 3 HOH A 72 3072 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 39.029 53.583 70.983 1 39.22 ? C1 CIT 3000 A 1 HETATM 2 O O1 CIT . . . B 2 39.675 52.511 71.206 1 39.69 ? O1 CIT 3000 A 1 HETATM 3 O O2 CIT . . . B 2 38.418 53.837 69.85 1 39.48 ? O2 CIT 3000 A 1 HETATM 4 C C2 CIT . . . B 2 38.991 54.585 72.138 1 39.23 ? C2 CIT 3000 A 1 HETATM 5 C C3 CIT . . . B 2 38.228 55.979 72.037 1 38.52 ? C3 CIT 3000 A 1 HETATM 6 O O7 CIT . . . B 2 38.947 56.768 71.068 1 38.47 ? O7 CIT 3000 A 1 HETATM 7 C C4 CIT . . . B 2 38.406 56.706 73.456 1 38.51 ? C4 CIT 3000 A 1 HETATM 8 C C5 CIT . . . B 2 39.716 57.016 74.092 1 38.12 ? C5 CIT 3000 A 1 HETATM 9 O O3 CIT . . . B 2 40.191 58.095 73.816 1 37.16 ? O3 CIT 3000 A 1 HETATM 10 O O4 CIT . . . B 2 40.228 56.148 74.841 1 38.18 ? O4 CIT 3000 A 1 HETATM 11 C C6 CIT . . . B 2 36.68 55.776 71.636 1 37.95 ? C6 CIT 3000 A 1 HETATM 12 O O5 CIT . . . B 2 36.277 56.298 70.576 1 37.02 ? O5 CIT 3000 A 1 HETATM 13 O O6 CIT . . . B 2 35.896 55.099 72.369 1 38.27 ? O6 CIT 3000 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #