data_1JEX # _model_server_result.job_id CswgdhIxhnTu3qPFc37gXg _model_server_result.datetime_utc '2024-12-03 18:41:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":95}' # _entry.id 1JEX # _exptl.entry_id 1JEX _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha ? _cell.angle_beta ? _cell.angle_gamma ? _cell.entry_id 1JEX _cell.length_a ? _cell.length_b ? _cell.length_c ? _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 39 A HIS 39 1_555 B FE HEM . A HEM 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc2 A NE2 HIS 63 A HIS 63 1_555 B FE HEM . A HEM 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1JEX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEM _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 95 _pdbx_nonpoly_scheme.auth_seq_num 95 _pdbx_nonpoly_scheme.pdb_mon_id HEM _pdbx_nonpoly_scheme.auth_mon_id HEM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -9.592 12.277 -15.571 1 0 ? CHA HEM 95 A 1 HETATM 2 C CHB HEM . . . B 2 -6.449 12.41 -19.169 1 0 ? CHB HEM 95 A 1 HETATM 3 C CHC HEM . . . B 2 -2.883 12.758 -15.971 1 0 ? CHC HEM 95 A 1 HETATM 4 C CHD HEM . . . B 2 -6.028 12.624 -12.376 1 0 ? CHD HEM 95 A 1 HETATM 5 C C1A HEM . . . B 2 -9.078 12.287 -16.793 1 0 ? C1A HEM 95 A 1 HETATM 6 C C2A HEM . . . B 2 -9.829 12.197 -18.042 1 0 ? C2A HEM 95 A 1 HETATM 7 C C3A HEM . . . B 2 -8.94 12.242 -19.048 1 0 ? C3A HEM 95 A 1 HETATM 8 C C4A HEM . . . B 2 -7.639 12.355 -18.453 1 0 ? C4A HEM 95 A 1 HETATM 9 C CMA HEM . . . B 2 -9.279 12.14 -20.527 1 0 ? CMA HEM 95 A 1 HETATM 10 C CAA HEM . . . B 2 -11.208 11.484 -18.276 1 0 ? CAA HEM 95 A 1 HETATM 11 C CBA HEM . . . B 2 -11.358 9.945 -18.282 1 0 ? CBA HEM 95 A 1 HETATM 12 C CGA HEM . . . B 2 -10.376 9.244 -17.354 1 0 ? CGA HEM 95 A 1 HETATM 13 O O1A HEM . . . B 2 -10.778 8.853 -16.229 1 0 ? O1A HEM 95 A 1 HETATM 14 O O2A HEM . . . B 2 -9.193 9.063 -17.739 1 0 ? O2A HEM 95 A 1 HETATM 15 C C1B HEM . . . B 2 -5.198 12.506 -18.596 1 0 ? C1B HEM 95 A 1 HETATM 16 C C2B HEM . . . B 2 -3.971 12.584 -19.371 1 0 ? C2B HEM 95 A 1 HETATM 17 C C3B HEM . . . B 2 -2.97 12.681 -18.483 1 0 ? C3B HEM 95 A 1 HETATM 18 C C4B HEM . . . B 2 -3.561 12.687 -17.145 1 0 ? C4B HEM 95 A 1 HETATM 19 C CMB HEM . . . B 2 -3.809 12.541 -20.882 1 0 ? CMB HEM 95 A 1 HETATM 20 C CAB HEM . . . B 2 -1.501 12.776 -18.813 1 0 ? CAB HEM 95 A 1 HETATM 21 C CBB HEM . . . B 2 -0.707 13.702 -18.744 1 0 ? CBB HEM 95 A 1 HETATM 22 C C1C HEM . . . B 2 -3.411 12.758 -14.725 1 0 ? C1C HEM 95 A 1 HETATM 23 C C2C HEM . . . B 2 -2.647 12.835 -13.503 1 0 ? C2C HEM 95 A 1 HETATM 24 C C3C HEM . . . B 2 -3.563 12.82 -12.464 1 0 ? C3C HEM 95 A 1 HETATM 25 C C4C HEM . . . B 2 -4.855 12.692 -13.064 1 0 ? C4C HEM 95 A 1 HETATM 26 C CMC HEM . . . B 2 -1.169 12.957 -13.323 1 0 ? CMC HEM 95 A 1 HETATM 27 C CAC HEM . . . B 2 -3.198 12.896 -11.018 1 0 ? CAC HEM 95 A 1 HETATM 28 C CBC HEM . . . B 2 -2.476 12.294 -10.445 1 0 ? CBC HEM 95 A 1 HETATM 29 C C1D HEM . . . B 2 -7.286 12.521 -12.923 1 0 ? C1D HEM 95 A 1 HETATM 30 C C2D HEM . . . B 2 -8.546 12.451 -12.158 1 0 ? C2D HEM 95 A 1 HETATM 31 C C3D HEM . . . B 2 -9.506 12.354 -13.064 1 0 ? C3D HEM 95 A 1 HETATM 32 C C4D HEM . . . B 2 -8.914 12.366 -14.381 1 0 ? C4D HEM 95 A 1 HETATM 33 C CMD HEM . . . B 2 -8.667 12.494 -10.664 1 0 ? CMD HEM 95 A 1 HETATM 34 C CAD HEM . . . B 2 -11.109 12.492 -12.951 1 0 ? CAD HEM 95 A 1 HETATM 35 C CBD HEM . . . B 2 -11.748 11.102 -12.715 1 0 ? CBD HEM 95 A 1 HETATM 36 C CGD HEM . . . B 2 -13.052 11.209 -11.924 1 0 ? CGD HEM 95 A 1 HETATM 37 O O1D HEM . . . B 2 -14.107 11.673 -12.353 1 0 ? O1D HEM 95 A 1 HETATM 38 O O2D HEM . . . B 2 -12.784 11.01 -10.642 1 0 ? O2D HEM 95 A 1 HETATM 39 N NA HEM . . . B 2 -7.747 12.358 -17.091 1 0 ? NA HEM 95 A 1 HETATM 40 N NB HEM . . . B 2 -4.919 12.562 -17.264 1 0 ? NB HEM 95 A 1 HETATM 41 N NC HEM . . . B 2 -4.745 12.675 -14.44 1 0 ? NC HEM 95 A 1 HETATM 42 N ND HEM . . . B 2 -7.572 12.465 -14.274 1 0 ? ND HEM 95 A 1 HETATM 43 FE FE HEM . . . B 2 -6.246 12.505 -15.78 1 0 ? FE HEM 95 A 1 HETATM 44 H HHB HEM . . . B 2 -6.551 12.496 -20.242 1 0 ? HHB HEM 95 A 1 HETATM 45 H HHC HEM . . . B 2 -1.79 12.879 -16.015 1 0 ? HHC HEM 95 A 1 HETATM 46 H HHD HEM . . . B 2 -5.997 12.642 -11.285 1 0 ? HHD HEM 95 A 1 HETATM 47 H HAB HEM . . . B 2 -1.137 11.678 -18.941 1 0 ? HAB HEM 95 A 1 HETATM 48 H HAC HEM . . . B 2 -3.778 13.926 -10.626 1 0 ? HAC HEM 95 A 1 HETATM 49 H HHA HEM . . . B 2 -10.701 12.2 -15.463 1 0 ? HHA HEM 95 A 1 HETATM 50 H HMA1 HEM . . . B 2 -9.492 13.006 -21.016 1 0 ? HMA1 HEM 95 A 1 HETATM 51 H HMA2 HEM . . . B 2 -9.948 11.267 -20.82 1 0 ? HMA2 HEM 95 A 1 HETATM 52 H HMA3 HEM . . . B 2 -8.245 11.696 -21.173 1 0 ? HMA3 HEM 95 A 1 HETATM 53 H HAA1 HEM . . . B 2 -11.709 11.896 -19.177 1 0 ? HAA1 HEM 95 A 1 HETATM 54 H HAA2 HEM . . . B 2 -11.828 11.548 -17.357 1 0 ? HAA2 HEM 95 A 1 HETATM 55 H HBA1 HEM . . . B 2 -11.188 9.555 -19.308 1 0 ? HBA1 HEM 95 A 1 HETATM 56 H HBA2 HEM . . . B 2 -12.388 9.664 -17.971 1 0 ? HBA2 HEM 95 A 1 HETATM 57 H HMB1 HEM . . . B 2 -3.884 13.831 -21.292 1 0 ? HMB1 HEM 95 A 1 HETATM 58 H HMB2 HEM . . . B 2 -4.799 12.264 -21.317 1 0 ? HMB2 HEM 95 A 1 HETATM 59 H HMB3 HEM . . . B 2 -3.018 12.235 -21.246 1 0 ? HMB3 HEM 95 A 1 HETATM 60 H HBB1 HEM . . . B 2 -1.003 14.722 -18.456 1 0 ? HBB1 HEM 95 A 1 HETATM 61 H HBB2 HEM . . . B 2 0.339 13.548 -19.045 1 0 ? HBB2 HEM 95 A 1 HETATM 62 H HMC1 HEM . . . B 2 -0.771 13.66 -13.401 1 0 ? HMC1 HEM 95 A 1 HETATM 63 H HMC2 HEM . . . B 2 -0.826 12.089 -14.304 1 0 ? HMC2 HEM 95 A 1 HETATM 64 H HMC3 HEM . . . B 2 -0.931 12.092 -12.517 1 0 ? HMC3 HEM 95 A 1 HETATM 65 H HBC1 HEM . . . B 2 -1.927 11.472 -10.924 1 0 ? HBC1 HEM 95 A 1 HETATM 66 H HBC2 HEM . . . B 2 -2.245 12.509 -9.391 1 0 ? HBC2 HEM 95 A 1 HETATM 67 H HMD1 HEM . . . B 2 -8.532 13.931 -10.56 1 0 ? HMD1 HEM 95 A 1 HETATM 68 H HMD2 HEM . . . B 2 -8.115 12.195 -10.241 1 0 ? HMD2 HEM 95 A 1 HETATM 69 H HMD3 HEM . . . B 2 -9.834 12.685 -10.488 1 0 ? HMD3 HEM 95 A 1 HETATM 70 H HAD1 HEM . . . B 2 -11.601 12.956 -13.834 1 0 ? HAD1 HEM 95 A 1 HETATM 71 H HAD2 HEM . . . B 2 -11.339 13.141 -12.079 1 0 ? HAD2 HEM 95 A 1 HETATM 72 H HBD1 HEM . . . B 2 -11.029 10.435 -12.187 1 0 ? HBD1 HEM 95 A 1 HETATM 73 H HBD2 HEM . . . B 2 -11.971 10.603 -13.679 1 0 ? HBD2 HEM 95 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 4446 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 73 #