data_1JF3 # _model_server_result.job_id DdTrussJJCVilABtEti5qA _model_server_result.datetime_utc '2025-04-28 09:57:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jf3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":148}' # _entry.id 1JF3 # _exptl.entry_id 1JF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.33 _cell.angle_gamma 90 _cell.entry_id 1JF3 _cell.length_a 61.133 _cell.length_b 32.792 _cell.length_c 40.949 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 90 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 148 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.307 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1JF3 _atom_sites.fract_transf_matrix[1][1] 0.016358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005738 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 148 148 HEM HEM . C 3 HOH A 1 201 201 HOH HOH . C 3 HOH A 2 202 202 HOH HOH . C 3 HOH A 3 203 203 HOH HOH . C 3 HOH A 4 204 204 HOH HOH . C 3 HOH A 5 205 205 HOH HOH . C 3 HOH A 6 206 206 HOH HOH . C 3 HOH A 7 207 207 HOH HOH . C 3 HOH A 8 208 208 HOH HOH . C 3 HOH A 9 209 209 HOH HOH . C 3 HOH A 10 210 210 HOH HOH . C 3 HOH A 11 211 211 HOH HOH . C 3 HOH A 12 212 212 HOH HOH . C 3 HOH A 13 213 213 HOH HOH . C 3 HOH A 14 214 214 HOH HOH . C 3 HOH A 15 215 215 HOH HOH . C 3 HOH A 16 216 216 HOH HOH . C 3 HOH A 17 217 217 HOH HOH . C 3 HOH A 18 218 218 HOH HOH . C 3 HOH A 19 219 219 HOH HOH . C 3 HOH A 20 220 220 HOH HOH . C 3 HOH A 21 221 221 HOH HOH . C 3 HOH A 22 222 222 HOH HOH . C 3 HOH A 23 223 223 HOH HOH . C 3 HOH A 24 224 224 HOH HOH . C 3 HOH A 25 225 225 HOH HOH . C 3 HOH A 26 226 226 HOH HOH . C 3 HOH A 27 227 227 HOH HOH . C 3 HOH A 28 228 228 HOH HOH . C 3 HOH A 29 229 229 HOH HOH . C 3 HOH A 30 230 230 HOH HOH . C 3 HOH A 31 231 231 HOH HOH . C 3 HOH A 32 232 232 HOH HOH . C 3 HOH A 33 233 233 HOH HOH . C 3 HOH A 34 234 234 HOH HOH . C 3 HOH A 35 235 235 HOH HOH . C 3 HOH A 36 236 236 HOH HOH . C 3 HOH A 37 237 237 HOH HOH . C 3 HOH A 38 238 238 HOH HOH . C 3 HOH A 39 239 239 HOH HOH . C 3 HOH A 40 240 240 HOH HOH . C 3 HOH A 41 241 241 HOH HOH . C 3 HOH A 42 242 242 HOH HOH . C 3 HOH A 43 243 243 HOH HOH . C 3 HOH A 44 244 244 HOH HOH . C 3 HOH A 45 245 245 HOH HOH . C 3 HOH A 46 246 246 HOH HOH . C 3 HOH A 47 247 247 HOH HOH . C 3 HOH A 48 248 248 HOH HOH . C 3 HOH A 49 249 249 HOH HOH . C 3 HOH A 50 250 250 HOH HOH . C 3 HOH A 51 251 251 HOH HOH . C 3 HOH A 52 252 252 HOH HOH . C 3 HOH A 53 253 253 HOH HOH . C 3 HOH A 54 254 254 HOH HOH . C 3 HOH A 55 255 255 HOH HOH . C 3 HOH A 56 256 256 HOH HOH . C 3 HOH A 57 257 257 HOH HOH . C 3 HOH A 58 258 258 HOH HOH . C 3 HOH A 59 259 259 HOH HOH . C 3 HOH A 60 260 260 HOH HOH . C 3 HOH A 61 261 261 HOH HOH . C 3 HOH A 62 262 262 HOH HOH . C 3 HOH A 63 263 263 HOH HOH . C 3 HOH A 64 264 264 HOH HOH . C 3 HOH A 65 265 265 HOH HOH . C 3 HOH A 66 266 266 HOH HOH . C 3 HOH A 67 267 267 HOH HOH . C 3 HOH A 68 268 268 HOH HOH . C 3 HOH A 69 269 269 HOH HOH . C 3 HOH A 70 270 270 HOH HOH . C 3 HOH A 71 271 271 HOH HOH . C 3 HOH A 72 272 272 HOH HOH . C 3 HOH A 73 273 273 HOH HOH . C 3 HOH A 74 274 274 HOH HOH . C 3 HOH A 75 275 275 HOH HOH . C 3 HOH A 76 276 276 HOH HOH . C 3 HOH A 77 277 277 HOH HOH . C 3 HOH A 78 278 278 HOH HOH . C 3 HOH A 79 279 279 HOH HOH . C 3 HOH A 80 280 280 HOH HOH . C 3 HOH A 81 281 281 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -25.952 -8.408 16.256 1 12.62 ? CHA HEM 148 A 1 HETATM 2 C CHB HEM . . . B 2 -25.57 -3.824 17.626 1 12.44 ? CHB HEM 148 A 1 HETATM 3 C CHC HEM . . . B 2 -23.103 -5.21 21.499 1 12.12 ? CHC HEM 148 A 1 HETATM 4 C CHD HEM . . . B 2 -23.355 -9.77 20.044 1 13.33 ? CHD HEM 148 A 1 HETATM 5 C C1A HEM . . . B 2 -26.128 -7.043 16.337 1 13.28 ? C1A HEM 148 A 1 HETATM 6 C C2A HEM . . . B 2 -27.025 -6.285 15.495 1 17.26 ? C2A HEM 148 A 1 HETATM 7 C C3A HEM . . . B 2 -26.887 -4.985 15.844 1 14.05 ? C3A HEM 148 A 1 HETATM 8 C C4A HEM . . . B 2 -25.947 -4.962 16.948 1 12.05 ? C4A HEM 148 A 1 HETATM 9 C CMA HEM . . . B 2 -27.584 -3.788 15.213 1 9.21 ? CMA HEM 148 A 1 HETATM 10 C CAA HEM . . . B 2 -28.046 -6.872 14.537 1 20.56 ? CAA HEM 148 A 1 HETATM 11 C CBA HEM . . . B 2 -27.533 -6.993 13.133 1 31.65 ? CBA HEM 148 A 1 HETATM 12 C CGA HEM . . . B 2 -28.565 -7.567 12.184 1 39.96 ? CGA HEM 148 A 1 HETATM 13 O O1A HEM . . . B 2 -29.313 -6.785 11.59 1 43.25 ? O1A HEM 148 A 1 HETATM 14 O O2A HEM . . . B 2 -28.609 -8.793 12.047 1 44.02 ? O2A HEM 148 A 1 HETATM 15 C C1B HEM . . . B 2 -24.781 -3.795 18.757 1 13.86 ? C1B HEM 148 A 1 HETATM 16 C C2B HEM . . . B 2 -24.438 -2.587 19.471 1 11.58 ? C2B HEM 148 A 1 HETATM 17 C C3B HEM . . . B 2 -23.732 -2.969 20.569 1 13.65 ? C3B HEM 148 A 1 HETATM 18 C C4B HEM . . . B 2 -23.679 -4.421 20.525 1 13.53 ? C4B HEM 148 A 1 HETATM 19 C CMB HEM . . . B 2 -24.79 -1.172 19.034 1 10.69 ? CMB HEM 148 A 1 HETATM 20 C CAB HEM . . . B 2 -23.062 -2.153 21.478 1 13.97 ? CAB HEM 148 A 1 HETATM 21 C CBB HEM . . . B 2 -23.706 -1.263 22.425 1 17.7 ? CBB HEM 148 A 1 HETATM 22 C C1C HEM . . . B 2 -23.005 -6.585 21.476 1 12.78 ? C1C HEM 148 A 1 HETATM 23 C C2C HEM . . . B 2 -22.377 -7.379 22.526 1 13.65 ? C2C HEM 148 A 1 HETATM 24 C C3C HEM . . . B 2 -22.374 -8.663 22.104 1 12.97 ? C3C HEM 148 A 1 HETATM 25 C C4C HEM . . . B 2 -23.067 -8.654 20.802 1 12.53 ? C4C HEM 148 A 1 HETATM 26 C CMC HEM . . . B 2 -21.857 -6.885 23.878 1 13.08 ? CMC HEM 148 A 1 HETATM 27 C CAC HEM . . . B 2 -21.685 -9.685 22.753 1 14.93 ? CAC HEM 148 A 1 HETATM 28 C CBC HEM . . . B 2 -22.146 -11.048 22.925 1 16.12 ? CBC HEM 148 A 1 HETATM 29 C C1D HEM . . . B 2 -24.041 -9.785 18.851 1 12.39 ? C1D HEM 148 A 1 HETATM 30 C C2D HEM . . . B 2 -24.391 -10.988 18.142 1 12.46 ? C2D HEM 148 A 1 HETATM 31 C C3D HEM . . . B 2 -25.135 -10.604 17.087 1 12.9 ? C3D HEM 148 A 1 HETATM 32 C C4D HEM . . . B 2 -25.217 -9.17 17.136 1 10.69 ? C4D HEM 148 A 1 HETATM 33 C CMD HEM . . . B 2 -23.982 -12.409 18.49 1 13.26 ? CMD HEM 148 A 1 HETATM 34 C CAD HEM . . . B 2 -25.768 -11.517 16.047 1 14.2 ? CAD HEM 148 A 1 HETATM 35 C CBD HEM . . . B 2 -25.059 -11.489 14.692 1 17.31 ? CBD HEM 148 A 1 HETATM 36 C CGD HEM . . . B 2 -23.579 -11.839 14.749 1 18.43 ? CGD HEM 148 A 1 HETATM 37 O O1D HEM . . . B 2 -22.782 -11.037 14.281 1 19.28 ? O1D HEM 148 A 1 HETATM 38 O O2D HEM . . . B 2 -23.221 -12.897 15.266 1 21.52 ? O2D HEM 148 A 1 HETATM 39 N NA HEM . . . B 2 -25.511 -6.234 17.269 1 15.77 ? NA HEM 148 A 1 HETATM 40 N NB HEM . . . B 2 -24.281 -4.922 19.387 1 13.78 ? NB HEM 148 A 1 HETATM 41 N NC HEM . . . B 2 -23.437 -7.373 20.428 1 12.19 ? NC HEM 148 A 1 HETATM 42 N ND HEM . . . B 2 -24.541 -8.664 18.225 1 10.67 ? ND HEM 148 A 1 HETATM 43 FE FE HEM . . . B 2 -24.264 -6.782 18.715 1 12.24 ? FE HEM 148 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #