data_1JFA # _model_server_result.job_id fv40p9hR6nO9Fm1HSl_2yQ _model_server_result.datetime_utc '2025-03-09 02:34:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jfa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 1JFA # _exptl.entry_id 1JFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JFA _cell.length_a 122.164 _cell.length_b 122.164 _cell.length_c 151.247 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JFA _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_655 -x+1,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 122.164 0 50.415667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 1JFA _atom_sites.fract_transf_matrix[1][1] 0.008186 _atom_sites.fract_transf_matrix[1][2] 0.004726 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009452 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 700 700 EDO EDO . D 2 EDO A 1 702 702 EDO EDO . E 2 EDO B 1 701 701 EDO EDO . F 2 EDO B 1 703 703 EDO EDO . G 3 HOH A 1 703 1 HOH HOH . G 3 HOH A 2 704 2 HOH HOH . G 3 HOH A 3 705 4 HOH HOH . G 3 HOH A 4 706 5 HOH HOH . G 3 HOH A 5 707 7 HOH HOH . G 3 HOH A 6 708 8 HOH HOH . G 3 HOH A 7 709 9 HOH HOH . G 3 HOH A 8 710 10 HOH HOH . G 3 HOH A 9 711 11 HOH HOH . G 3 HOH A 10 712 12 HOH HOH . G 3 HOH A 11 713 14 HOH HOH . G 3 HOH A 12 714 15 HOH HOH . G 3 HOH A 13 715 16 HOH HOH . G 3 HOH A 14 716 17 HOH HOH . G 3 HOH A 15 717 19 HOH HOH . G 3 HOH A 16 718 20 HOH HOH . G 3 HOH A 17 719 22 HOH HOH . G 3 HOH A 18 720 23 HOH HOH . G 3 HOH A 19 721 28 HOH HOH . G 3 HOH A 20 722 29 HOH HOH . G 3 HOH A 21 723 31 HOH HOH . G 3 HOH A 22 724 32 HOH HOH . G 3 HOH A 23 725 33 HOH HOH . G 3 HOH A 24 726 35 HOH HOH . G 3 HOH A 25 727 39 HOH HOH . G 3 HOH A 26 728 40 HOH HOH . G 3 HOH A 27 729 41 HOH HOH . G 3 HOH A 28 730 42 HOH HOH . G 3 HOH A 29 731 44 HOH HOH . G 3 HOH A 30 732 45 HOH HOH . G 3 HOH A 31 733 46 HOH HOH . G 3 HOH A 32 734 47 HOH HOH . G 3 HOH A 33 735 48 HOH HOH . G 3 HOH A 34 736 49 HOH HOH . G 3 HOH A 35 737 50 HOH HOH . G 3 HOH A 36 738 51 HOH HOH . G 3 HOH A 37 739 53 HOH HOH . G 3 HOH A 38 740 54 HOH HOH . G 3 HOH A 39 741 55 HOH HOH . G 3 HOH A 40 742 56 HOH HOH . G 3 HOH A 41 743 60 HOH HOH . G 3 HOH A 42 744 61 HOH HOH . G 3 HOH A 43 745 62 HOH HOH . G 3 HOH A 44 746 63 HOH HOH . G 3 HOH A 45 747 64 HOH HOH . G 3 HOH A 46 748 65 HOH HOH . G 3 HOH A 47 749 67 HOH HOH . G 3 HOH A 48 750 69 HOH HOH . G 3 HOH A 49 751 70 HOH HOH . G 3 HOH A 50 752 78 HOH HOH . G 3 HOH A 51 753 82 HOH HOH . G 3 HOH A 52 754 86 HOH HOH . G 3 HOH A 53 755 91 HOH HOH . G 3 HOH A 54 756 92 HOH HOH . G 3 HOH A 55 757 95 HOH HOH . G 3 HOH A 56 758 96 HOH HOH . G 3 HOH A 57 759 97 HOH HOH . G 3 HOH A 58 760 98 HOH HOH . G 3 HOH A 59 761 102 HOH HOH . G 3 HOH A 60 762 104 HOH HOH . G 3 HOH A 61 763 108 HOH HOH . G 3 HOH A 62 764 109 HOH HOH . G 3 HOH A 63 765 114 HOH HOH . G 3 HOH A 64 766 115 HOH HOH . G 3 HOH A 65 767 116 HOH HOH . G 3 HOH A 66 768 117 HOH HOH . G 3 HOH A 67 769 118 HOH HOH . G 3 HOH A 68 770 120 HOH HOH . G 3 HOH A 69 771 124 HOH HOH . G 3 HOH A 70 772 126 HOH HOH . G 3 HOH A 71 773 127 HOH HOH . G 3 HOH A 72 774 128 HOH HOH . G 3 HOH A 73 775 129 HOH HOH . G 3 HOH A 74 776 131 HOH HOH . G 3 HOH A 75 777 134 HOH HOH . G 3 HOH A 76 778 135 HOH HOH . G 3 HOH A 77 779 136 HOH HOH . G 3 HOH A 78 780 137 HOH HOH . G 3 HOH A 79 781 138 HOH HOH . G 3 HOH A 80 782 140 HOH HOH . G 3 HOH A 81 783 141 HOH HOH . G 3 HOH A 82 784 144 HOH HOH . G 3 HOH A 83 785 145 HOH HOH . G 3 HOH A 84 786 147 HOH HOH . G 3 HOH A 85 787 149 HOH HOH . G 3 HOH A 86 788 152 HOH HOH . G 3 HOH A 87 789 153 HOH HOH . G 3 HOH A 88 790 156 HOH HOH . G 3 HOH A 89 791 157 HOH HOH . G 3 HOH A 90 792 158 HOH HOH . G 3 HOH A 91 793 162 HOH HOH . G 3 HOH A 92 794 163 HOH HOH . G 3 HOH A 93 795 164 HOH HOH . G 3 HOH A 94 796 165 HOH HOH . G 3 HOH A 95 797 167 HOH HOH . G 3 HOH A 96 798 168 HOH HOH . G 3 HOH A 97 799 169 HOH HOH . G 3 HOH A 98 800 171 HOH HOH . G 3 HOH A 99 801 172 HOH HOH . G 3 HOH A 100 802 174 HOH HOH . G 3 HOH A 101 803 175 HOH HOH . G 3 HOH A 102 804 178 HOH HOH . G 3 HOH A 103 805 179 HOH HOH . G 3 HOH A 104 806 181 HOH HOH . G 3 HOH A 105 807 182 HOH HOH . G 3 HOH A 106 808 183 HOH HOH . G 3 HOH A 107 809 184 HOH HOH . G 3 HOH A 108 810 185 HOH HOH . G 3 HOH A 109 811 186 HOH HOH . G 3 HOH A 110 812 187 HOH HOH . G 3 HOH A 111 813 190 HOH HOH . G 3 HOH A 112 814 191 HOH HOH . G 3 HOH A 113 815 192 HOH HOH . G 3 HOH A 114 816 193 HOH HOH . G 3 HOH A 115 817 194 HOH HOH . G 3 HOH A 116 818 196 HOH HOH . G 3 HOH A 117 819 197 HOH HOH . G 3 HOH A 118 820 198 HOH HOH . G 3 HOH A 119 821 202 HOH HOH . G 3 HOH A 120 822 203 HOH HOH . G 3 HOH A 121 823 205 HOH HOH . G 3 HOH A 122 824 206 HOH HOH . G 3 HOH A 123 825 207 HOH HOH . G 3 HOH A 124 826 209 HOH HOH . G 3 HOH A 125 827 211 HOH HOH . G 3 HOH A 126 828 212 HOH HOH . G 3 HOH A 127 829 213 HOH HOH . G 3 HOH A 128 830 214 HOH HOH . G 3 HOH A 129 831 217 HOH HOH . G 3 HOH A 130 832 220 HOH HOH . G 3 HOH A 131 833 221 HOH HOH . G 3 HOH A 132 834 222 HOH HOH . G 3 HOH A 133 835 223 HOH HOH . G 3 HOH A 134 836 224 HOH HOH . G 3 HOH A 135 837 225 HOH HOH . G 3 HOH A 136 838 226 HOH HOH . G 3 HOH A 137 839 228 HOH HOH . G 3 HOH A 138 840 231 HOH HOH . G 3 HOH A 139 841 233 HOH HOH . G 3 HOH A 140 842 234 HOH HOH . G 3 HOH A 141 843 235 HOH HOH . G 3 HOH A 142 844 236 HOH HOH . G 3 HOH A 143 845 237 HOH HOH . G 3 HOH A 144 846 240 HOH HOH . G 3 HOH A 145 847 243 HOH HOH . G 3 HOH A 146 848 246 HOH HOH . G 3 HOH A 147 849 247 HOH HOH . G 3 HOH A 148 850 248 HOH HOH . G 3 HOH A 149 851 250 HOH HOH . G 3 HOH A 150 852 253 HOH HOH . G 3 HOH A 151 853 255 HOH HOH . G 3 HOH A 152 854 257 HOH HOH . G 3 HOH A 153 855 258 HOH HOH . G 3 HOH A 154 856 259 HOH HOH . G 3 HOH A 155 857 260 HOH HOH . G 3 HOH A 156 858 262 HOH HOH . G 3 HOH A 157 859 263 HOH HOH . G 3 HOH A 158 860 264 HOH HOH . G 3 HOH A 159 861 266 HOH HOH . H 3 HOH B 1 704 3 HOH HOH . H 3 HOH B 2 705 6 HOH HOH . H 3 HOH B 3 706 13 HOH HOH . H 3 HOH B 4 707 18 HOH HOH . H 3 HOH B 5 708 21 HOH HOH . H 3 HOH B 6 709 24 HOH HOH . H 3 HOH B 7 710 25 HOH HOH . H 3 HOH B 8 711 26 HOH HOH . H 3 HOH B 9 712 27 HOH HOH . H 3 HOH B 10 713 30 HOH HOH . H 3 HOH B 11 714 34 HOH HOH . H 3 HOH B 12 715 36 HOH HOH . H 3 HOH B 13 716 37 HOH HOH . H 3 HOH B 14 717 38 HOH HOH . H 3 HOH B 15 718 43 HOH HOH . H 3 HOH B 16 719 52 HOH HOH . H 3 HOH B 17 720 57 HOH HOH . H 3 HOH B 18 721 58 HOH HOH . H 3 HOH B 19 722 59 HOH HOH . H 3 HOH B 20 723 66 HOH HOH . H 3 HOH B 21 724 68 HOH HOH . H 3 HOH B 22 725 71 HOH HOH . H 3 HOH B 23 726 72 HOH HOH . H 3 HOH B 24 727 73 HOH HOH . H 3 HOH B 25 728 74 HOH HOH . H 3 HOH B 26 729 75 HOH HOH . H 3 HOH B 27 730 76 HOH HOH . H 3 HOH B 28 731 77 HOH HOH . H 3 HOH B 29 732 79 HOH HOH . H 3 HOH B 30 733 80 HOH HOH . H 3 HOH B 31 734 81 HOH HOH . H 3 HOH B 32 735 83 HOH HOH . H 3 HOH B 33 736 84 HOH HOH . H 3 HOH B 34 737 85 HOH HOH . H 3 HOH B 35 738 87 HOH HOH . H 3 HOH B 36 739 88 HOH HOH . H 3 HOH B 37 740 89 HOH HOH . H 3 HOH B 38 741 90 HOH HOH . H 3 HOH B 39 742 93 HOH HOH . H 3 HOH B 40 743 94 HOH HOH . H 3 HOH B 41 744 99 HOH HOH . H 3 HOH B 42 745 100 HOH HOH . H 3 HOH B 43 746 101 HOH HOH . H 3 HOH B 44 747 103 HOH HOH . H 3 HOH B 45 748 105 HOH HOH . H 3 HOH B 46 749 106 HOH HOH . H 3 HOH B 47 750 107 HOH HOH . H 3 HOH B 48 751 110 HOH HOH . H 3 HOH B 49 752 111 HOH HOH . H 3 HOH B 50 753 112 HOH HOH . H 3 HOH B 51 754 113 HOH HOH . H 3 HOH B 52 755 119 HOH HOH . H 3 HOH B 53 756 121 HOH HOH . H 3 HOH B 54 757 122 HOH HOH . H 3 HOH B 55 758 123 HOH HOH . H 3 HOH B 56 759 125 HOH HOH . H 3 HOH B 57 760 130 HOH HOH . H 3 HOH B 58 761 132 HOH HOH . H 3 HOH B 59 762 133 HOH HOH . H 3 HOH B 60 763 139 HOH HOH . H 3 HOH B 61 764 142 HOH HOH . H 3 HOH B 62 765 143 HOH HOH . H 3 HOH B 63 766 146 HOH HOH . H 3 HOH B 64 767 148 HOH HOH . H 3 HOH B 65 768 150 HOH HOH . H 3 HOH B 66 769 151 HOH HOH . H 3 HOH B 67 770 154 HOH HOH . H 3 HOH B 68 771 155 HOH HOH . H 3 HOH B 69 772 159 HOH HOH . H 3 HOH B 70 773 160 HOH HOH . H 3 HOH B 71 774 161 HOH HOH . H 3 HOH B 72 775 166 HOH HOH . H 3 HOH B 73 776 170 HOH HOH . H 3 HOH B 74 777 173 HOH HOH . H 3 HOH B 75 778 176 HOH HOH . H 3 HOH B 76 779 177 HOH HOH . H 3 HOH B 77 780 180 HOH HOH . H 3 HOH B 78 781 188 HOH HOH . H 3 HOH B 79 782 189 HOH HOH . H 3 HOH B 80 783 195 HOH HOH . H 3 HOH B 81 784 199 HOH HOH . H 3 HOH B 82 785 200 HOH HOH . H 3 HOH B 83 786 201 HOH HOH . H 3 HOH B 84 787 204 HOH HOH . H 3 HOH B 85 788 208 HOH HOH . H 3 HOH B 86 789 210 HOH HOH . H 3 HOH B 87 790 215 HOH HOH . H 3 HOH B 88 791 216 HOH HOH . H 3 HOH B 89 792 218 HOH HOH . H 3 HOH B 90 793 219 HOH HOH . H 3 HOH B 91 794 227 HOH HOH . H 3 HOH B 92 795 229 HOH HOH . H 3 HOH B 93 796 230 HOH HOH . H 3 HOH B 94 797 232 HOH HOH . H 3 HOH B 95 798 238 HOH HOH . H 3 HOH B 96 799 239 HOH HOH . H 3 HOH B 97 800 241 HOH HOH . H 3 HOH B 98 801 242 HOH HOH . H 3 HOH B 99 802 244 HOH HOH . H 3 HOH B 100 803 245 HOH HOH . H 3 HOH B 101 804 249 HOH HOH . H 3 HOH B 102 805 251 HOH HOH . H 3 HOH B 103 806 252 HOH HOH . H 3 HOH B 104 807 254 HOH HOH . H 3 HOH B 105 808 256 HOH HOH . H 3 HOH B 106 809 261 HOH HOH . H 3 HOH B 107 810 265 HOH HOH . H 3 HOH B 108 811 267 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 45.879 51.735 14.359 1 31.49 ? C1 EDO 702 A 1 HETATM 2 O O1 EDO . . . D 2 45.68 50.973 13.04 1 32.17 ? O1 EDO 702 A 1 HETATM 3 C C2 EDO . . . D 2 47.344 51.996 14.746 1 31.38 ? C2 EDO 702 A 1 HETATM 4 O O2 EDO . . . D 2 48.21 52.092 13.433 1 33.99 ? O2 EDO 702 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #