data_1JFP # _model_server_result.job_id SPXrUAmRtoOor30uELx7Wg _model_server_result.datetime_utc '2025-04-09 00:53:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 1JFP # _exptl.entry_id 1JFP _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? covale ? covale1 A NZ LYS 296 A LYS 296 1_555 B C15 RET . A RET 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.282 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 275 n n C1 C6 RET sing 276 n n C1 C16 RET sing 277 n n C1 C17 RET sing 278 n n C2 C3 RET sing 279 n n C2 H21 RET sing 280 n n C2 H22 RET sing 281 n n C3 C4 RET sing 282 n n C3 H31 RET sing 283 n n C3 H32 RET sing 284 n n C4 C5 RET sing 285 n n C4 H41 RET sing 286 n n C4 H42 RET sing 287 n n C5 C6 RET doub 288 n n C5 C18 RET sing 289 n n C6 C7 RET sing 290 n n C7 C8 RET doub 291 e n C7 H7 RET sing 292 n n C8 C9 RET sing 293 n n C8 H8 RET sing 294 n n C9 C10 RET doub 295 e n C9 C19 RET sing 296 n n C10 C11 RET sing 297 n n C10 H10 RET sing 298 n n C11 C12 RET doub 299 e n C11 H11 RET sing 300 n n C12 C13 RET sing 301 n n C12 H12 RET sing 302 n n C13 C14 RET doub 303 e n C13 C20 RET sing 304 n n C14 C15 RET sing 305 n n C14 H14 RET sing 306 n n C15 O1 RET doub 307 n n C15 H15 RET sing 308 n n C16 H161 RET sing 309 n n C16 H162 RET sing 310 n n C16 H163 RET sing 311 n n C17 H171 RET sing 312 n n C17 H172 RET sing 313 n n C17 H173 RET sing 314 n n C18 H181 RET sing 315 n n C18 H182 RET sing 316 n n C18 H183 RET sing 317 n n C19 H191 RET sing 318 n n C19 H192 RET sing 319 n n C19 H193 RET sing 320 n n C20 H201 RET sing 321 n n C20 H202 RET sing 322 n n C20 H203 RET sing 323 n n # _atom_sites.entry_id 1JFP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id RET _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 400 _pdbx_nonpoly_scheme.auth_seq_num 400 _pdbx_nonpoly_scheme.pdb_mon_id RET _pdbx_nonpoly_scheme.auth_mon_id RET _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 9.341 -7.884 0.493 1 0.14 ? C1 RET 400 A 1 HETATM 2 C C2 RET . . . B 2 9.385 -9.083 -0.49 1 0 ? C2 RET 400 A 1 HETATM 3 C C3 RET . . . B 2 10.786 -9.302 -1.038 1 0 ? C3 RET 400 A 1 HETATM 4 C C4 RET . . . B 2 11.23 -8.08 -1.831 1 0.14 ? C4 RET 400 A 1 HETATM 5 C C5 RET . . . B 2 10.928 -6.764 -1.149 1 -0.28 ? C5 RET 400 A 1 HETATM 6 C C6 RET . . . B 2 10.109 -6.671 -0.072 1 -0.14 ? C6 RET 400 A 1 HETATM 7 C C7 RET . . . B 2 9.928 -5.391 0.607 1 -0.15 ? C7 RET 400 A 1 HETATM 8 C C8 RET . . . B 2 9.026 -4.474 0.223 1 -0.15 ? C8 RET 400 A 1 HETATM 9 C C9 RET . . . B 2 8.824 -3.139 0.783 1 -0.14 ? C9 RET 400 A 1 HETATM 10 C C10 RET . . . B 2 7.652 -2.521 0.532 1 -0.15 ? C10 RET 400 A 1 HETATM 11 C C11 RET . . . B 2 7.27 -1.175 0.898 1 -0.15 ? C11 RET 400 A 1 HETATM 12 C C12 RET . . . B 2 6.033 -0.666 1.047 1 -0.15 ? C12 RET 400 A 1 HETATM 13 C C13 RET . . . B 2 4.715 -1.311 1.046 1 -0.14 ? C13 RET 400 A 1 HETATM 14 C C14 RET . . . B 2 3.624 -0.522 0.983 1 -0.14 ? C14 RET 400 A 1 HETATM 15 C C15 RET . . . B 2 2.239 -1.03 1.078 1 0.33 ? C15 RET 400 A 1 HETATM 16 C C16 RET . . . B 2 9.966 -8.327 1.825 1 0 ? C16 RET 400 A 1 HETATM 17 C C17 RET . . . B 2 7.85 -7.555 0.73 1 0 ? C17 RET 400 A 1 HETATM 18 C C18 RET . . . B 2 11.649 -5.602 -1.776 1 0.14 ? C18 RET 400 A 1 HETATM 19 C C19 RET . . . B 2 9.959 -2.534 1.567 1 0.14 ? C19 RET 400 A 1 HETATM 20 C C20 RET . . . B 2 4.632 -2.797 1.254 1 0.14 ? C20 RET 400 A 1 HETATM 21 H H21 RET . . . B 2 8.696 -8.905 -1.328 1 0 ? H21 RET 400 A 1 HETATM 22 H H22 RET . . . B 2 9.037 -9.999 0.004 1 0 ? H22 RET 400 A 1 HETATM 23 H H31 RET . . . B 2 10.81 -10.192 -1.671 1 0 ? H31 RET 400 A 1 HETATM 24 H H32 RET . . . B 2 11.494 -9.494 -0.225 1 0 ? H32 RET 400 A 1 HETATM 25 H H41 RET . . . B 2 12.305 -8.169 -2.019 1 0 ? H41 RET 400 A 1 HETATM 26 H H42 RET . . . B 2 10.743 -8.066 -2.811 1 0 ? H42 RET 400 A 1 HETATM 27 H H7 RET . . . B 2 10.596 -5.218 1.448 1 0.15 ? H7 RET 400 A 1 HETATM 28 H H8 RET . . . B 2 8.36 -4.734 -0.597 1 0.15 ? H8 RET 400 A 1 HETATM 29 H H10 RET . . . B 2 6.907 -3.06 -0.048 1 0.15 ? H10 RET 400 A 1 HETATM 30 H H11 RET . . . B 2 8.098 -0.479 1.011 1 0.15 ? H11 RET 400 A 1 HETATM 31 H H12 RET . . . B 2 6.005 0.408 1.247 1 0.15 ? H12 RET 400 A 1 HETATM 32 H H14 RET . . . B 2 3.738 0.555 0.878 1 0.15 ? H14 RET 400 A 1 HETATM 33 H H15 RET . . . B 2 2.065 -2.11 0.984 1 0.06 ? H15 RET 400 A 1 HETATM 34 H H161 RET . . . B 2 9.864 -7.55 2.578 1 0 ? H161 RET 400 A 1 HETATM 35 H H162 RET . . . B 2 9.472 -9.223 2.216 1 0 ? H162 RET 400 A 1 HETATM 36 H H163 RET . . . B 2 11.036 -8.54 1.734 1 0 ? H163 RET 400 A 1 HETATM 37 H H171 RET . . . B 2 7.386 -7.13 -0.167 1 0 ? H171 RET 400 A 1 HETATM 38 H H172 RET . . . B 2 7.709 -6.844 1.553 1 0 ? H172 RET 400 A 1 HETATM 39 H H173 RET . . . B 2 7.287 -8.458 0.986 1 0 ? H173 RET 400 A 1 HETATM 40 H H181 RET . . . B 2 11.203 -5.38 -2.752 1 0 ? H181 RET 400 A 1 HETATM 41 H H182 RET . . . B 2 12.705 -5.841 -1.932 1 0 ? H182 RET 400 A 1 HETATM 42 H H183 RET . . . B 2 11.619 -4.692 -1.173 1 0 ? H183 RET 400 A 1 HETATM 43 H H191 RET . . . B 2 10.817 -2.361 0.909 1 0 ? H191 RET 400 A 1 HETATM 44 H H192 RET . . . B 2 10.279 -3.191 2.376 1 0 ? H192 RET 400 A 1 HETATM 45 H H193 RET . . . B 2 9.695 -1.585 2.038 1 0 ? H193 RET 400 A 1 HETATM 46 H H201 RET . . . B 2 3.745 -3.089 1.822 1 0 ? H201 RET 400 A 1 HETATM 47 H H202 RET . . . B 2 5.476 -3.161 1.842 1 0 ? H202 RET 400 A 1 HETATM 48 H H203 RET . . . B 2 4.617 -3.324 0.296 1 0 ? H203 RET 400 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #