data_1JG4 # _model_server_result.job_id 7j7s0hHT5ubd2zsI6TpdWg _model_server_result.datetime_utc '2025-02-27 16:28:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1JG4 # _exptl.entry_id 1JG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JG4 _cell.length_a 39.502 _cell.length_b 52.701 _cell.length_c 97.739 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JG4 _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 264 n n N HN1 SAM sing 265 n n N HN2 SAM sing 266 n n CA C SAM sing 267 n n CA CB SAM sing 268 n n CA HA SAM sing 269 n n C O SAM doub 270 n n C OXT SAM sing 271 n n CB CG SAM sing 272 n n CB HB1 SAM sing 273 n n CB HB2 SAM sing 274 n n CG SD SAM sing 275 n n CG HG1 SAM sing 276 n n CG HG2 SAM sing 277 n n SD CE SAM sing 278 n n SD C5' SAM sing 279 n n CE HE1 SAM sing 280 n n CE HE2 SAM sing 281 n n CE HE3 SAM sing 282 n n C5' C4' SAM sing 283 n n C5' "H5'1" SAM sing 284 n n C5' "H5'2" SAM sing 285 n n C4' O4' SAM sing 286 n n C4' C3' SAM sing 287 n n C4' H4' SAM sing 288 n n O4' C1' SAM sing 289 n n C3' O3' SAM sing 290 n n C3' C2' SAM sing 291 n n C3' H3' SAM sing 292 n n O3' HO3' SAM sing 293 n n C2' O2' SAM sing 294 n n C2' C1' SAM sing 295 n n C2' H2' SAM sing 296 n n O2' HO2' SAM sing 297 n n C1' N9 SAM sing 298 n n C1' H1' SAM sing 299 n n N9 C8 SAM sing 300 n y N9 C4 SAM sing 301 n y C8 N7 SAM doub 302 n y C8 H8 SAM sing 303 n n N7 C5 SAM sing 304 n y C5 C6 SAM sing 305 n y C5 C4 SAM doub 306 n y C6 N6 SAM sing 307 n n C6 N1 SAM doub 308 n y N6 HN61 SAM sing 309 n n N6 HN62 SAM sing 310 n n N1 C2 SAM sing 311 n y C2 N3 SAM doub 312 n y C2 H2 SAM sing 313 n n N3 C4 SAM sing 314 n y # _atom_sites.entry_id 1JG4 _atom_sites.fract_transf_matrix[1][1] 0.025315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 500 500 SAM SAM . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 7 HOH HOH . C 3 HOH A 6 506 8 HOH HOH . C 3 HOH A 7 507 9 HOH HOH . C 3 HOH A 8 508 11 HOH HOH . C 3 HOH A 9 509 13 HOH HOH . C 3 HOH A 10 510 14 HOH HOH . C 3 HOH A 11 511 15 HOH HOH . C 3 HOH A 12 512 19 HOH HOH . C 3 HOH A 13 513 21 HOH HOH . C 3 HOH A 14 514 22 HOH HOH . C 3 HOH A 15 515 23 HOH HOH . C 3 HOH A 16 516 24 HOH HOH . C 3 HOH A 17 517 25 HOH HOH . C 3 HOH A 18 518 26 HOH HOH . C 3 HOH A 19 519 27 HOH HOH . C 3 HOH A 20 520 29 HOH HOH . C 3 HOH A 21 521 30 HOH HOH . C 3 HOH A 22 522 31 HOH HOH . C 3 HOH A 23 523 32 HOH HOH . C 3 HOH A 24 524 33 HOH HOH . C 3 HOH A 25 525 34 HOH HOH . C 3 HOH A 26 526 35 HOH HOH . C 3 HOH A 27 527 36 HOH HOH . C 3 HOH A 28 528 37 HOH HOH . C 3 HOH A 29 529 38 HOH HOH . C 3 HOH A 30 530 39 HOH HOH . C 3 HOH A 31 531 40 HOH HOH . C 3 HOH A 32 532 41 HOH HOH . C 3 HOH A 33 533 43 HOH HOH . C 3 HOH A 34 534 44 HOH HOH . C 3 HOH A 35 535 45 HOH HOH . C 3 HOH A 36 536 46 HOH HOH . C 3 HOH A 37 537 47 HOH HOH . C 3 HOH A 38 538 48 HOH HOH . C 3 HOH A 39 539 49 HOH HOH . C 3 HOH A 40 540 50 HOH HOH . C 3 HOH A 41 541 51 HOH HOH . C 3 HOH A 42 542 53 HOH HOH . C 3 HOH A 43 543 54 HOH HOH . C 3 HOH A 44 544 55 HOH HOH . C 3 HOH A 45 545 56 HOH HOH . C 3 HOH A 46 546 57 HOH HOH . C 3 HOH A 47 547 58 HOH HOH . C 3 HOH A 48 548 60 HOH HOH . C 3 HOH A 49 549 61 HOH HOH . C 3 HOH A 50 550 62 HOH HOH . C 3 HOH A 51 551 63 HOH HOH . C 3 HOH A 52 552 64 HOH HOH . C 3 HOH A 53 553 65 HOH HOH . C 3 HOH A 54 554 66 HOH HOH . C 3 HOH A 55 555 67 HOH HOH . C 3 HOH A 56 556 68 HOH HOH . C 3 HOH A 57 557 69 HOH HOH . C 3 HOH A 58 558 70 HOH HOH . C 3 HOH A 59 559 71 HOH HOH . C 3 HOH A 60 560 72 HOH HOH . C 3 HOH A 61 561 73 HOH HOH . C 3 HOH A 62 562 74 HOH HOH . C 3 HOH A 63 563 76 HOH HOH . C 3 HOH A 64 564 77 HOH HOH . C 3 HOH A 65 565 78 HOH HOH . C 3 HOH A 66 566 79 HOH HOH . C 3 HOH A 67 567 80 HOH HOH . C 3 HOH A 68 568 81 HOH HOH . C 3 HOH A 69 569 83 HOH HOH . C 3 HOH A 70 570 84 HOH HOH . C 3 HOH A 71 571 85 HOH HOH . C 3 HOH A 72 572 86 HOH HOH . C 3 HOH A 73 573 88 HOH HOH . C 3 HOH A 74 574 89 HOH HOH . C 3 HOH A 75 575 90 HOH HOH . C 3 HOH A 76 576 91 HOH HOH . C 3 HOH A 77 577 92 HOH HOH . C 3 HOH A 78 578 95 HOH HOH . C 3 HOH A 79 579 96 HOH HOH . C 3 HOH A 80 580 97 HOH HOH . C 3 HOH A 81 581 99 HOH HOH . C 3 HOH A 82 582 100 HOH HOH . C 3 HOH A 83 583 101 HOH HOH . C 3 HOH A 84 584 102 HOH HOH . C 3 HOH A 85 585 103 HOH HOH . C 3 HOH A 86 586 104 HOH HOH . C 3 HOH A 87 587 105 HOH HOH . C 3 HOH A 88 588 108 HOH HOH . C 3 HOH A 89 589 109 HOH HOH . C 3 HOH A 90 590 110 HOH HOH . C 3 HOH A 91 591 111 HOH HOH . C 3 HOH A 92 592 112 HOH HOH . C 3 HOH A 93 593 113 HOH HOH . C 3 HOH A 94 594 115 HOH HOH . C 3 HOH A 95 595 116 HOH HOH . C 3 HOH A 96 596 117 HOH HOH . C 3 HOH A 97 597 118 HOH HOH . C 3 HOH A 98 598 119 HOH HOH . C 3 HOH A 99 599 120 HOH HOH . C 3 HOH A 100 600 121 HOH HOH . C 3 HOH A 101 601 122 HOH HOH . C 3 HOH A 102 602 124 HOH HOH . C 3 HOH A 103 603 125 HOH HOH . C 3 HOH A 104 604 127 HOH HOH . C 3 HOH A 105 605 128 HOH HOH . C 3 HOH A 106 606 129 HOH HOH . C 3 HOH A 107 607 130 HOH HOH . C 3 HOH A 108 608 131 HOH HOH . C 3 HOH A 109 609 132 HOH HOH . C 3 HOH A 110 610 133 HOH HOH . C 3 HOH A 111 611 134 HOH HOH . C 3 HOH A 112 612 135 HOH HOH . C 3 HOH A 113 613 140 HOH HOH . C 3 HOH A 114 614 141 HOH HOH . C 3 HOH A 115 615 143 HOH HOH . C 3 HOH A 116 616 144 HOH HOH . C 3 HOH A 117 617 146 HOH HOH . C 3 HOH A 118 618 147 HOH HOH . C 3 HOH A 119 619 148 HOH HOH . C 3 HOH A 120 620 149 HOH HOH . C 3 HOH A 121 621 150 HOH HOH . C 3 HOH A 122 622 151 HOH HOH . C 3 HOH A 123 623 152 HOH HOH . C 3 HOH A 124 624 153 HOH HOH . C 3 HOH A 125 625 155 HOH HOH . C 3 HOH A 126 626 156 HOH HOH . C 3 HOH A 127 627 157 HOH HOH . C 3 HOH A 128 628 158 HOH HOH . C 3 HOH A 129 629 159 HOH HOH . C 3 HOH A 130 630 160 HOH HOH . C 3 HOH A 131 631 161 HOH HOH . C 3 HOH A 132 632 162 HOH HOH . C 3 HOH A 133 633 163 HOH HOH . C 3 HOH A 134 634 164 HOH HOH . C 3 HOH A 135 635 165 HOH HOH . C 3 HOH A 136 636 166 HOH HOH . C 3 HOH A 137 637 167 HOH HOH . C 3 HOH A 138 638 169 HOH HOH . C 3 HOH A 139 639 170 HOH HOH . C 3 HOH A 140 640 172 HOH HOH . C 3 HOH A 141 641 173 HOH HOH . C 3 HOH A 142 642 174 HOH HOH . C 3 HOH A 143 643 175 HOH HOH . C 3 HOH A 144 644 176 HOH HOH . C 3 HOH A 145 645 177 HOH HOH . C 3 HOH A 146 646 178 HOH HOH . C 3 HOH A 147 647 179 HOH HOH . C 3 HOH A 148 648 180 HOH HOH . C 3 HOH A 149 649 181 HOH HOH . C 3 HOH A 150 650 182 HOH HOH . C 3 HOH A 151 651 183 HOH HOH . C 3 HOH A 152 652 184 HOH HOH . C 3 HOH A 153 653 185 HOH HOH . C 3 HOH A 154 654 186 HOH HOH . C 3 HOH A 155 655 187 HOH HOH . C 3 HOH A 156 656 188 HOH HOH . C 3 HOH A 157 657 189 HOH HOH . C 3 HOH A 158 658 190 HOH HOH . C 3 HOH A 159 659 191 HOH HOH . C 3 HOH A 160 660 192 HOH HOH . C 3 HOH A 161 661 193 HOH HOH . C 3 HOH A 162 662 194 HOH HOH . C 3 HOH A 163 663 195 HOH HOH . C 3 HOH A 164 664 196 HOH HOH . C 3 HOH A 165 665 197 HOH HOH . C 3 HOH A 166 666 198 HOH HOH . C 3 HOH A 167 667 199 HOH HOH . C 3 HOH A 168 668 200 HOH HOH . C 3 HOH A 169 669 201 HOH HOH . C 3 HOH A 170 670 202 HOH HOH . C 3 HOH A 171 671 203 HOH HOH . C 3 HOH A 172 672 205 HOH HOH . C 3 HOH A 173 673 206 HOH HOH . C 3 HOH A 174 674 207 HOH HOH . C 3 HOH A 175 675 208 HOH HOH . C 3 HOH A 176 676 209 HOH HOH . C 3 HOH A 177 677 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 33.589 48.147 13.155 1 20.49 ? N SAM 500 A 1 HETATM 2 C CA SAM . . . B 2 32.578 49.115 13.388 1 21.99 ? CA SAM 500 A 1 HETATM 3 C C SAM . . . B 2 32.71 50.232 12.373 1 22.71 ? C SAM 500 A 1 HETATM 4 O O SAM . . . B 2 33.614 50.246 11.478 1 19.06 ? O SAM 500 A 1 HETATM 5 O OXT SAM . . . B 2 31.885 51.161 12.444 1 20.67 ? OXT SAM 500 A 1 HETATM 6 C CB SAM . . . B 2 32.793 49.416 14.822 1 24.68 ? CB SAM 500 A 1 HETATM 7 C CG SAM . . . B 2 32.243 48.837 16.066 1 23.88 ? CG SAM 500 A 1 HETATM 8 S SD SAM . . . B 2 30.452 48.858 16.452 1 24.75 ? SD SAM 500 A 1 HETATM 9 C CE SAM . . . B 2 30.234 49.69 17.973 1 22.72 ? CE SAM 500 A 1 HETATM 10 C C5' SAM . . . B 2 30.29 47.114 16.447 1 22.34 ? C5' SAM 500 A 1 HETATM 11 C C4' SAM . . . B 2 29.044 46.318 16.489 1 20.77 ? C4' SAM 500 A 1 HETATM 12 O O4' SAM . . . B 2 28.923 44.989 16.495 1 19.56 ? O4' SAM 500 A 1 HETATM 13 C C3' SAM . . . B 2 27.729 47.098 16.543 1 18.73 ? C3' SAM 500 A 1 HETATM 14 O O3' SAM . . . B 2 27.361 47.813 15.411 1 17.14 ? O3' SAM 500 A 1 HETATM 15 C C2' SAM . . . B 2 26.828 45.888 17.049 1 19.06 ? C2' SAM 500 A 1 HETATM 16 O O2' SAM . . . B 2 25.496 45.857 16.725 1 18.58 ? O2' SAM 500 A 1 HETATM 17 C C1' SAM . . . B 2 27.573 44.707 16.538 1 19.29 ? C1' SAM 500 A 1 HETATM 18 N N9 SAM . . . B 2 27.931 43.436 17.105 1 19.11 ? N9 SAM 500 A 1 HETATM 19 C C8 SAM . . . B 2 27.627 42.948 18.343 1 19.61 ? C8 SAM 500 A 1 HETATM 20 N N7 SAM . . . B 2 27.292 41.697 18.583 1 17.81 ? N7 SAM 500 A 1 HETATM 21 C C5 SAM . . . B 2 27.364 41.253 17.36 1 17.34 ? C5 SAM 500 A 1 HETATM 22 C C6 SAM . . . B 2 27.13 39.905 16.824 1 16.6 ? C6 SAM 500 A 1 HETATM 23 N N6 SAM . . . B 2 26.785 38.848 17.572 1 16.77 ? N6 SAM 500 A 1 HETATM 24 N N1 SAM . . . B 2 27.262 39.653 15.483 1 17.48 ? N1 SAM 500 A 1 HETATM 25 C C2 SAM . . . B 2 27.615 40.715 14.684 1 15.39 ? C2 SAM 500 A 1 HETATM 26 N N3 SAM . . . B 2 27.859 41.994 15.053 1 17.3 ? N3 SAM 500 A 1 HETATM 27 C C4 SAM . . . B 2 27.738 42.276 16.408 1 18.86 ? C4 SAM 500 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #