data_1JGJ # _model_server_result.job_id TWz4HTM2kcpunQ8DqDo_fA _model_server_result.datetime_utc '2024-12-05 14:14:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1JGJ # _exptl.entry_id 1JGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JGJ _cell.length_a 87.34 _cell.length_b 130.81 _cell.length_c 50.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 205 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.267 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 291 n n C1 C6 RET sing 292 n n C1 C16 RET sing 293 n n C1 C17 RET sing 294 n n C2 C3 RET sing 295 n n C2 H21 RET sing 296 n n C2 H22 RET sing 297 n n C3 C4 RET sing 298 n n C3 H31 RET sing 299 n n C3 H32 RET sing 300 n n C4 C5 RET sing 301 n n C4 H41 RET sing 302 n n C4 H42 RET sing 303 n n C5 C6 RET doub 304 n n C5 C18 RET sing 305 n n C6 C7 RET sing 306 n n C7 C8 RET doub 307 e n C7 H7 RET sing 308 n n C8 C9 RET sing 309 n n C8 H8 RET sing 310 n n C9 C10 RET doub 311 e n C9 C19 RET sing 312 n n C10 C11 RET sing 313 n n C10 H10 RET sing 314 n n C11 C12 RET doub 315 e n C11 H11 RET sing 316 n n C12 C13 RET sing 317 n n C12 H12 RET sing 318 n n C13 C14 RET doub 319 e n C13 C20 RET sing 320 n n C14 C15 RET sing 321 n n C14 H14 RET sing 322 n n C15 O1 RET doub 323 n n C15 H15 RET sing 324 n n C16 H161 RET sing 325 n n C16 H162 RET sing 326 n n C16 H163 RET sing 327 n n C17 H171 RET sing 328 n n C17 H172 RET sing 329 n n C17 H173 RET sing 330 n n C18 H181 RET sing 331 n n C18 H182 RET sing 332 n n C18 H183 RET sing 333 n n C19 H191 RET sing 334 n n C19 H192 RET sing 335 n n C19 H193 RET sing 336 n n C20 H201 RET sing 337 n n C20 H202 RET sing 338 n n C20 H203 RET sing 339 n n # _atom_sites.entry_id 1JGJ _atom_sites.fract_transf_matrix[1][1] 0.01145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007645 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 701 701 BOG BOG . C 3 RET A 1 301 301 RET RET . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 406 406 HOH HOH . D 4 HOH A 5 407 407 HOH HOH . D 4 HOH A 6 408 408 HOH HOH . D 4 HOH A 7 410 410 HOH HOH . D 4 HOH A 8 501 501 HOH HOH . D 4 HOH A 9 502 502 HOH HOH . D 4 HOH A 10 601 601 HOH HOH . D 4 HOH A 11 602 602 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . C 3 63.204 34.182 6.034 1 31.73 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . C 3 64.173 35.071 6.855 1 30.16 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . C 3 65.053 34.284 7.801 1 31.19 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . C 3 65.976 33.402 6.984 1 28.26 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . C 3 65.149 32.394 6.188 1 31.39 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . C 3 63.83 32.706 5.721 1 31.1 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . C 3 63.075 31.636 4.947 1 31.44 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . C 3 61.806 31.677 4.447 1 30.98 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . C 3 61.198 30.55 3.714 1 30.28 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . C 3 59.878 30.724 3.336 1 29.95 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . C 3 59.087 29.707 2.64 1 27.24 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . C 3 57.779 29.972 2.379 1 29.62 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . C 3 56.834 29.002 1.728 1 27.69 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . C 3 55.542 29.419 1.6 1 24.1 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . C 3 54.455 28.585 1.052 1 28.02 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . C 3 61.854 34.129 6.85 1 32.52 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . C 3 62.956 34.948 4.7 1 30.28 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . C 3 65.833 31.061 5.961 1 29.69 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . C 3 61.987 29.266 3.443 1 28.68 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . C 3 57.304 27.603 1.295 1 24.77 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #