data_1JGY # _model_server_result.job_id HYCQG36MQ_jmUiGd3O10og _model_server_result.datetime_utc '2025-03-04 09:13:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":859}' # _entry.id 1JGY # _exptl.entry_id 1JGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 568.914 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPHEROIDENE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JGY _cell.length_a 141.68 _cell.length_b 141.68 _cell.length_c 186.84 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 153 L HIS 153 1_555 I MG BCL . M BCL 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc2 A NE2 HIS 173 L HIS 173 1_555 E MG BCL . L BCL 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc3 A NE2 HIS 190 L HIS 190 1_555 G FE FE . M FE 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc4 A NE2 HIS 230 L HIS 230 1_555 G FE FE . M FE 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc5 D MG BCL . L BCL 850 1_555 B NE2 HIS 182 M HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc6 B NE2 HIS 202 M HIS 202 1_555 H MG BCL . M BCL 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc7 B NE2 HIS 219 M HIS 219 1_555 G FE FE . M FE 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc8 B OE2 GLU 234 M GLU 234 1_555 G FE FE . M FE 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc9 B OE1 GLU 234 M GLU 234 1_555 G FE FE . M FE 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc10 B NE2 HIS 266 M HIS 266 1_555 G FE FE . M FE 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? # _chem_comp.formula 'C41 H60 O' _chem_comp.formula_weight 568.914 _chem_comp.id SPO _chem_comp.mon_nstd_flag . _chem_comp.name SPHEROIDENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM1 O1 SPO sing 839 n n CM1 HM11 SPO sing 840 n n CM1 HM12 SPO sing 841 n n CM1 HM13 SPO sing 842 n n O1 C1 SPO sing 843 n n C1 C2 SPO sing 844 n n C1 C3 SPO sing 845 n n C1 C4 SPO sing 846 n n C2 H21A SPO sing 847 n n C2 H22A SPO sing 848 n n C2 H23 SPO sing 849 n n C3 H31 SPO sing 850 n n C3 H32A SPO sing 851 n n C3 H33 SPO sing 852 n n C4 C5 SPO sing 853 n n C4 H41 SPO sing 854 n n C4 H42 SPO sing 855 n n C5 C6 SPO doub 856 e n C5 H5 SPO sing 857 n n C6 C7 SPO sing 858 n n C6 H6 SPO sing 859 n n C7 C8 SPO sing 860 n n C7 C9 SPO doub 861 e n C8 H81 SPO sing 862 n n C8 H82 SPO sing 863 n n C8 H83 SPO sing 864 n n C9 C10 SPO sing 865 n n C9 H9 SPO sing 866 n n C10 C11 SPO doub 867 e n C10 H10 SPO sing 868 n n C11 C12 SPO sing 869 n n C11 H11 SPO sing 870 n n C12 C13 SPO sing 871 n n C12 C14 SPO doub 872 e n C13 H131 SPO sing 873 n n C13 H132 SPO sing 874 n n C13 H133 SPO sing 875 n n C14 C15 SPO sing 876 n n C14 H14 SPO sing 877 n n C15 C16 SPO doub 878 e n C15 H15 SPO sing 879 n n C16 C17 SPO sing 880 n n C16 H16 SPO sing 881 n n C17 C18 SPO sing 882 n n C17 C19 SPO doub 883 z n C18 H181 SPO sing 884 n n C18 H182 SPO sing 885 n n C18 H183 SPO sing 886 n n C19 C20 SPO sing 887 n n C19 H19 SPO sing 888 n n C20 C21 SPO doub 889 e n C20 H20 SPO sing 890 n n C21 C22 SPO sing 891 n n C21 H21 SPO sing 892 n n C22 C23 SPO doub 893 e n C22 H22 SPO sing 894 n n C23 C24 SPO sing 895 n n C23 C25 SPO sing 896 n n C24 H241 SPO sing 897 n n C24 H242 SPO sing 898 n n C24 H243 SPO sing 899 n n C25 C26 SPO doub 900 e n C25 H25 SPO sing 901 n n C26 C27 SPO sing 902 n n C26 H26 SPO sing 903 n n C27 C28 SPO doub 904 e n C27 H27 SPO sing 905 n n C28 C29 SPO sing 906 n n C28 C30 SPO sing 907 n n C29 H291 SPO sing 908 n n C29 H292 SPO sing 909 n n C29 H293 SPO sing 910 n n C30 C31 SPO sing 911 n n C30 H301 SPO sing 912 n n C30 H302 SPO sing 913 n n C31 C32 SPO sing 914 n n C31 H311 SPO sing 915 n n C31 H312 SPO sing 916 n n C32 C33 SPO doub 917 e n C32 H32 SPO sing 918 n n C33 C34 SPO sing 919 n n C33 C35 SPO sing 920 n n C34 H341 SPO sing 921 n n C34 H342 SPO sing 922 n n C34 H343 SPO sing 923 n n C35 C36 SPO sing 924 n n C35 H351 SPO sing 925 n n C35 H352 SPO sing 926 n n C36 C37 SPO sing 927 n n C36 H361 SPO sing 928 n n C36 H362 SPO sing 929 n n C37 C38 SPO doub 930 n n C37 H37 SPO sing 931 n n C38 C39 SPO sing 932 n n C38 C40 SPO sing 933 n n C39 H391 SPO sing 934 n n C39 H392 SPO sing 935 n n C39 H393 SPO sing 936 n n C40 H401 SPO sing 937 n n C40 H402 SPO sing 938 n n C40 H403 SPO sing 939 n n # _atom_sites.entry_id 1JGY _atom_sites.fract_transf_matrix[1][1] 0.007058 _atom_sites.fract_transf_matrix[1][2] 0.004075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 850 850 BCL BCL . E 4 BCL L 1 851 851 BCL BCL . F 5 BPH L 1 855 855 BPH BPH . G 6 FE M 1 856 856 FE FE . H 4 BCL M 1 852 852 BCL BCL . I 4 BCL M 1 853 853 BCL BCL . J 5 BPH M 1 854 854 BPH BPH . K 7 U10 M 1 857 857 U10 U10 . L 8 SPO M 1 859 859 SPO SPO . M 9 CDL M 1 3000 3000 CDL CDL . N 10 HOH L 1 1003 1003 HOH WAT . N 10 HOH L 2 1005 1005 HOH WAT . N 10 HOH L 3 1009 1009 HOH WAT . N 10 HOH L 4 1018 1018 HOH WAT . N 10 HOH L 5 1031 1031 HOH WAT . N 10 HOH L 6 1033 1033 HOH WAT . N 10 HOH L 7 1045 1045 HOH WAT . N 10 HOH L 8 1050 1050 HOH WAT . N 10 HOH L 9 1052 1052 HOH WAT . N 10 HOH L 10 1053 1053 HOH WAT . N 10 HOH L 11 1056 1056 HOH WAT . N 10 HOH L 12 1061 1061 HOH WAT . N 10 HOH L 13 1064 1064 HOH WAT . N 10 HOH L 14 1070 1070 HOH WAT . N 10 HOH L 15 1074 1074 HOH WAT . N 10 HOH L 16 1086 1086 HOH WAT . O 10 HOH M 1 1000 1000 HOH WAT . O 10 HOH M 2 1001 1001 HOH WAT . O 10 HOH M 3 1006 1006 HOH WAT . O 10 HOH M 4 1010 1010 HOH WAT . O 10 HOH M 5 1011 1011 HOH WAT . O 10 HOH M 6 1022 1022 HOH WAT . O 10 HOH M 7 1023 1023 HOH WAT . O 10 HOH M 8 1024 1024 HOH WAT . O 10 HOH M 9 1029 1029 HOH WAT . O 10 HOH M 10 1030 1030 HOH WAT . O 10 HOH M 11 1032 1032 HOH WAT . O 10 HOH M 12 1034 1034 HOH WAT . O 10 HOH M 13 1035 1035 HOH WAT . O 10 HOH M 14 1036 1036 HOH WAT . O 10 HOH M 15 1037 1037 HOH WAT . O 10 HOH M 16 1042 1042 HOH WAT . O 10 HOH M 17 1043 1043 HOH WAT . O 10 HOH M 18 1046 1046 HOH WAT . O 10 HOH M 19 1047 1047 HOH WAT . O 10 HOH M 20 1054 1054 HOH WAT . O 10 HOH M 21 1057 1057 HOH WAT . O 10 HOH M 22 1059 1059 HOH WAT . O 10 HOH M 23 1065 1065 HOH WAT . O 10 HOH M 24 1066 1066 HOH WAT . O 10 HOH M 25 1069 1069 HOH WAT . O 10 HOH M 26 1071 1071 HOH WAT . O 10 HOH M 27 1072 1072 HOH WAT . O 10 HOH M 28 1076 1076 HOH WAT . O 10 HOH M 29 1077 1077 HOH WAT . O 10 HOH M 30 1080 1080 HOH WAT . O 10 HOH M 31 1082 1082 HOH WAT . O 10 HOH M 32 1085 1085 HOH WAT . O 10 HOH M 33 1087 1087 HOH WAT . P 10 HOH H 1 1002 1002 HOH WAT . P 10 HOH H 2 1004 1004 HOH WAT . P 10 HOH H 3 1007 1007 HOH WAT . P 10 HOH H 4 1008 1008 HOH WAT . P 10 HOH H 5 1012 1012 HOH WAT . P 10 HOH H 6 1014 1014 HOH WAT . P 10 HOH H 7 1015 1015 HOH WAT . P 10 HOH H 8 1016 1016 HOH WAT . P 10 HOH H 9 1019 1019 HOH WAT . P 10 HOH H 10 1020 1020 HOH WAT . P 10 HOH H 11 1026 1026 HOH WAT . P 10 HOH H 12 1027 1027 HOH WAT . P 10 HOH H 13 1028 1028 HOH WAT . P 10 HOH H 14 1038 1038 HOH WAT . P 10 HOH H 15 1039 1039 HOH WAT . P 10 HOH H 16 1040 1040 HOH WAT . P 10 HOH H 17 1041 1041 HOH WAT . P 10 HOH H 18 1044 1044 HOH WAT . P 10 HOH H 19 1048 1048 HOH WAT . P 10 HOH H 20 1049 1049 HOH WAT . P 10 HOH H 21 1051 1051 HOH WAT . P 10 HOH H 22 1055 1055 HOH WAT . P 10 HOH H 23 1058 1058 HOH WAT . P 10 HOH H 24 1060 1060 HOH WAT . P 10 HOH H 25 1063 1063 HOH WAT . P 10 HOH H 26 1067 1067 HOH WAT . P 10 HOH H 27 1068 1068 HOH WAT . P 10 HOH H 28 1073 1073 HOH WAT . P 10 HOH H 29 1075 1075 HOH WAT . P 10 HOH H 30 1078 1078 HOH WAT . P 10 HOH H 31 1079 1079 HOH WAT . P 10 HOH H 32 1081 1081 HOH WAT . P 10 HOH H 33 1083 1083 HOH WAT . P 10 HOH H 34 1088 1088 HOH WAT . P 10 HOH H 35 1089 1089 HOH WAT . P 10 HOH H 36 1090 1090 HOH WAT . P 10 HOH H 37 1091 1091 HOH WAT . P 10 HOH H 38 1092 1092 HOH WAT . P 10 HOH H 39 1093 1093 HOH WAT . P 10 HOH H 40 1094 1094 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CM1 SPO . . . L 8 43.205 85.139 55.828 1 55.91 ? CM1 SPO 859 M 1 HETATM 2 O O1 SPO . . . L 8 44.293 86.228 55.674 1 56.39 ? O1 SPO 859 M 1 HETATM 3 C C1 SPO . . . L 8 45.329 86.226 54.475 1 57.15 ? C1 SPO 859 M 1 HETATM 4 C C2 SPO . . . L 8 46.668 86.712 55.027 1 57.35 ? C2 SPO 859 M 1 HETATM 5 C C3 SPO . . . L 8 45.557 84.822 53.862 1 57.25 ? C3 SPO 859 M 1 HETATM 6 C C4 SPO . . . L 8 44.944 87.228 53.395 1 57.34 ? C4 SPO 859 M 1 HETATM 7 C C5 SPO . . . L 8 43.561 87.207 52.984 1 58.25 ? C5 SPO 859 M 1 HETATM 8 C C6 SPO . . . L 8 43.128 88.117 51.858 1 59.84 ? C6 SPO 859 M 1 HETATM 9 C C7 SPO . . . L 8 41.938 88.882 51.774 1 59.37 ? C7 SPO 859 M 1 HETATM 10 C C8 SPO . . . L 8 40.977 88.753 53.004 1 59.07 ? C8 SPO 859 M 1 HETATM 11 C C9 SPO . . . L 8 41.759 89.643 50.631 1 59.32 ? C9 SPO 859 M 1 HETATM 12 C C10 SPO . . . L 8 40.532 90.513 50.379 1 58.76 ? C10 SPO 859 M 1 HETATM 13 C C11 SPO . . . L 8 40.482 91.3 49.07 1 57.61 ? C11 SPO 859 M 1 HETATM 14 C C12 SPO . . . L 8 39.298 91.583 48.401 1 55.6 ? C12 SPO 859 M 1 HETATM 15 C C13 SPO . . . L 8 37.879 91.094 48.95 1 53.87 ? C13 SPO 859 M 1 HETATM 16 C C14 SPO . . . L 8 39.495 92.346 47.236 1 53.17 ? C14 SPO 859 M 1 HETATM 17 C C15 SPO . . . L 8 38.308 92.807 46.345 1 52.04 ? C15 SPO 859 M 1 HETATM 18 C C16 SPO . . . L 8 38.441 93.686 45.037 1 50 ? C16 SPO 859 M 1 HETATM 19 C C17 SPO . . . L 8 37.246 94.046 44.332 1 50.29 ? C17 SPO 859 M 1 HETATM 20 C C18 SPO . . . L 8 35.846 93.606 44.8 1 50.86 ? C18 SPO 859 M 1 HETATM 21 C C19 SPO . . . L 8 37.255 94.827 43.17 1 50.61 ? C19 SPO 859 M 1 HETATM 22 C C20 SPO . . . L 8 38.403 95.346 42.549 1 51.51 ? C20 SPO 859 M 1 HETATM 23 C C21 SPO . . . L 8 38.316 96.595 41.714 1 50.18 ? C21 SPO 859 M 1 HETATM 24 C C22 SPO . . . L 8 39.603 96.992 41.137 1 49.13 ? C22 SPO 859 M 1 HETATM 25 C C23 SPO . . . L 8 39.812 97.356 39.827 1 50.18 ? C23 SPO 859 M 1 HETATM 26 C C24 SPO . . . L 8 38.859 98.47 39.306 1 51.77 ? C24 SPO 859 M 1 HETATM 27 C C25 SPO . . . L 8 41.185 97.62 39.806 1 52.02 ? C25 SPO 859 M 1 HETATM 28 C C26 SPO . . . L 8 41.931 98.034 38.607 1 54.48 ? C26 SPO 859 M 1 HETATM 29 C C27 SPO . . . L 8 43.39 98.276 38.744 1 57.4 ? C27 SPO 859 M 1 HETATM 30 C C28 SPO . . . L 8 44.165 98.662 37.642 1 60.14 ? C28 SPO 859 M 1 HETATM 31 C C29 SPO . . . L 8 43.632 98.876 36.185 1 60.31 ? C29 SPO 859 M 1 HETATM 32 C C30 SPO . . . L 8 45.683 98.926 37.769 1 63.23 ? C30 SPO 859 M 1 HETATM 33 C C31 SPO . . . L 8 45.965 100.181 38.577 1 67.2 ? C31 SPO 859 M 1 HETATM 34 C C32 SPO . . . L 8 47.241 100.739 38.364 1 71.13 ? C32 SPO 859 M 1 HETATM 35 C C33 SPO . . . L 8 47.989 101.633 39.155 1 74.09 ? C33 SPO 859 M 1 HETATM 36 C C34 SPO . . . L 8 47.513 102.207 40.496 1 75.01 ? C34 SPO 859 M 1 HETATM 37 C C35 SPO . . . L 8 49.41 102.167 38.758 1 76.56 ? C35 SPO 859 M 1 HETATM 38 C C36 SPO . . . L 8 50.629 101.315 39.145 1 79.06 ? C36 SPO 859 M 1 HETATM 39 C C37 SPO . . . L 8 51.819 101.619 38.252 1 80.61 ? C37 SPO 859 M 1 HETATM 40 C C38 SPO . . . L 8 52.082 101.293 36.9 1 81.18 ? C38 SPO 859 M 1 HETATM 41 C C39 SPO . . . L 8 53.253 100.409 36.402 1 82.02 ? C39 SPO 859 M 1 HETATM 42 C C40 SPO . . . L 8 51.224 101.778 35.712 1 80.93 ? C40 SPO 859 M 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #