data_1JH0 # _model_server_result.job_id OQKdzWVxFtEHMvWonmfN7Q _model_server_result.datetime_utc '2025-03-04 09:37:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":859}' # _entry.id 1JH0 # _exptl.entry_id 1JH0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 568.914 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPHEROIDENE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JH0 _cell.length_a 141.8 _cell.length_b 141.8 _cell.length_c 187.4 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 G FE FE . M FE 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 G FE FE . M FE 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 G FE FE . M FE 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 B OE2 GLU 234 M GLU 234 1_555 G FE FE . M FE 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc5 B OE1 GLU 234 M GLU 234 1_555 G FE FE . M FE 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 G FE FE . M FE 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C41 H60 O' _chem_comp.formula_weight 568.914 _chem_comp.id SPO _chem_comp.mon_nstd_flag . _chem_comp.name SPHEROIDENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM1 O1 SPO sing 584 n n CM1 HM11 SPO sing 585 n n CM1 HM12 SPO sing 586 n n CM1 HM13 SPO sing 587 n n O1 C1 SPO sing 588 n n C1 C2 SPO sing 589 n n C1 C3 SPO sing 590 n n C1 C4 SPO sing 591 n n C2 H21A SPO sing 592 n n C2 H22A SPO sing 593 n n C2 H23 SPO sing 594 n n C3 H31 SPO sing 595 n n C3 H32A SPO sing 596 n n C3 H33 SPO sing 597 n n C4 C5 SPO sing 598 n n C4 H41 SPO sing 599 n n C4 H42 SPO sing 600 n n C5 C6 SPO doub 601 e n C5 H5 SPO sing 602 n n C6 C7 SPO sing 603 n n C6 H6 SPO sing 604 n n C7 C8 SPO sing 605 n n C7 C9 SPO doub 606 e n C8 H81 SPO sing 607 n n C8 H82 SPO sing 608 n n C8 H83 SPO sing 609 n n C9 C10 SPO sing 610 n n C9 H9 SPO sing 611 n n C10 C11 SPO doub 612 e n C10 H10 SPO sing 613 n n C11 C12 SPO sing 614 n n C11 H11 SPO sing 615 n n C12 C13 SPO sing 616 n n C12 C14 SPO doub 617 e n C13 H131 SPO sing 618 n n C13 H132 SPO sing 619 n n C13 H133 SPO sing 620 n n C14 C15 SPO sing 621 n n C14 H14 SPO sing 622 n n C15 C16 SPO doub 623 e n C15 H15 SPO sing 624 n n C16 C17 SPO sing 625 n n C16 H16 SPO sing 626 n n C17 C18 SPO sing 627 n n C17 C19 SPO doub 628 z n C18 H181 SPO sing 629 n n C18 H182 SPO sing 630 n n C18 H183 SPO sing 631 n n C19 C20 SPO sing 632 n n C19 H19 SPO sing 633 n n C20 C21 SPO doub 634 e n C20 H20 SPO sing 635 n n C21 C22 SPO sing 636 n n C21 H21 SPO sing 637 n n C22 C23 SPO doub 638 e n C22 H22 SPO sing 639 n n C23 C24 SPO sing 640 n n C23 C25 SPO sing 641 n n C24 H241 SPO sing 642 n n C24 H242 SPO sing 643 n n C24 H243 SPO sing 644 n n C25 C26 SPO doub 645 e n C25 H25 SPO sing 646 n n C26 C27 SPO sing 647 n n C26 H26 SPO sing 648 n n C27 C28 SPO doub 649 e n C27 H27 SPO sing 650 n n C28 C29 SPO sing 651 n n C28 C30 SPO sing 652 n n C29 H291 SPO sing 653 n n C29 H292 SPO sing 654 n n C29 H293 SPO sing 655 n n C30 C31 SPO sing 656 n n C30 H301 SPO sing 657 n n C30 H302 SPO sing 658 n n C31 C32 SPO sing 659 n n C31 H311 SPO sing 660 n n C31 H312 SPO sing 661 n n C32 C33 SPO doub 662 e n C32 H32 SPO sing 663 n n C33 C34 SPO sing 664 n n C33 C35 SPO sing 665 n n C34 H341 SPO sing 666 n n C34 H342 SPO sing 667 n n C34 H343 SPO sing 668 n n C35 C36 SPO sing 669 n n C35 H351 SPO sing 670 n n C35 H352 SPO sing 671 n n C36 C37 SPO sing 672 n n C36 H361 SPO sing 673 n n C36 H362 SPO sing 674 n n C37 C38 SPO doub 675 n n C37 H37 SPO sing 676 n n C38 C39 SPO sing 677 n n C38 C40 SPO sing 678 n n C39 H391 SPO sing 679 n n C39 H392 SPO sing 680 n n C39 H393 SPO sing 681 n n C40 H401 SPO sing 682 n n C40 H402 SPO sing 683 n n C40 H403 SPO sing 684 n n # _atom_sites.entry_id 1JH0 _atom_sites.fract_transf_matrix[1][1] 0.007052 _atom_sites.fract_transf_matrix[1][2] 0.004072 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 851 851 BCL BCL . E 4 BCL L 1 853 853 BCL BCL . F 5 BPH L 1 855 855 BPH BPH . G 6 FE M 1 856 856 FE FE2 . H 4 BCL M 1 850 850 BCL BCL . I 4 BCL M 1 852 852 BCL BCL . J 5 BPH M 1 854 854 BPH BPH . K 7 U10 M 1 857 857 U10 U10 . L 8 SPO M 1 859 859 SPO SPO . M 9 HOH L 1 862 862 HOH HOH . M 9 HOH L 2 866 866 HOH HOH . M 9 HOH L 3 868 868 HOH HOH . M 9 HOH L 4 884 884 HOH HOH . M 9 HOH L 5 886 886 HOH HOH . M 9 HOH L 6 888 888 HOH HOH . M 9 HOH L 7 895 895 HOH HOH . M 9 HOH L 8 897 897 HOH HOH . M 9 HOH L 9 898 898 HOH HOH . M 9 HOH L 10 905 905 HOH HOH . M 9 HOH L 11 906 906 HOH HOH . M 9 HOH L 12 911 911 HOH HOH . M 9 HOH L 13 912 912 HOH HOH . M 9 HOH L 14 913 913 HOH HOH . M 9 HOH L 15 922 922 HOH HOH . M 9 HOH L 16 931 931 HOH HOH . M 9 HOH L 17 932 932 HOH HOH . M 9 HOH L 18 933 933 HOH HOH . M 9 HOH L 19 934 934 HOH HOH . M 9 HOH L 20 939 939 HOH HOH . M 9 HOH L 21 941 941 HOH HOH . M 9 HOH L 22 945 945 HOH HOH . M 9 HOH L 23 954 954 HOH HOH . N 9 HOH M 1 860 860 HOH HOH . N 9 HOH M 2 861 861 HOH HOH . N 9 HOH M 3 863 863 HOH HOH . N 9 HOH M 4 864 864 HOH HOH . N 9 HOH M 5 867 867 HOH HOH . N 9 HOH M 6 869 869 HOH HOH . N 9 HOH M 7 870 870 HOH HOH . N 9 HOH M 8 874 874 HOH HOH . N 9 HOH M 9 875 875 HOH HOH . N 9 HOH M 10 877 877 HOH HOH . N 9 HOH M 11 879 879 HOH HOH . N 9 HOH M 12 880 880 HOH HOH . N 9 HOH M 13 882 882 HOH HOH . N 9 HOH M 14 883 883 HOH HOH . N 9 HOH M 15 885 885 HOH HOH . N 9 HOH M 16 889 889 HOH HOH . N 9 HOH M 17 891 891 HOH HOH . N 9 HOH M 18 892 892 HOH HOH . N 9 HOH M 19 894 894 HOH HOH . N 9 HOH M 20 901 901 HOH HOH . N 9 HOH M 21 903 903 HOH HOH . N 9 HOH M 22 904 904 HOH HOH . N 9 HOH M 23 907 907 HOH HOH . N 9 HOH M 24 908 908 HOH HOH . N 9 HOH M 25 909 909 HOH HOH . N 9 HOH M 26 916 916 HOH HOH . N 9 HOH M 27 918 918 HOH HOH . N 9 HOH M 28 919 919 HOH HOH . N 9 HOH M 29 920 920 HOH HOH . N 9 HOH M 30 921 921 HOH HOH . N 9 HOH M 31 923 923 HOH HOH . N 9 HOH M 32 925 925 HOH HOH . N 9 HOH M 33 927 927 HOH HOH . N 9 HOH M 34 928 928 HOH HOH . N 9 HOH M 35 929 929 HOH HOH . N 9 HOH M 36 930 930 HOH HOH . N 9 HOH M 37 937 937 HOH HOH . N 9 HOH M 38 938 938 HOH HOH . N 9 HOH M 39 942 942 HOH HOH . N 9 HOH M 40 943 943 HOH HOH . N 9 HOH M 41 944 944 HOH HOH . N 9 HOH M 42 947 947 HOH HOH . N 9 HOH M 43 952 952 HOH HOH . N 9 HOH M 44 955 955 HOH HOH . N 9 HOH M 45 956 956 HOH HOH . O 9 HOH H 1 865 865 HOH HOH . O 9 HOH H 2 871 871 HOH HOH . O 9 HOH H 3 872 872 HOH HOH . O 9 HOH H 4 873 873 HOH HOH . O 9 HOH H 5 876 876 HOH HOH . O 9 HOH H 6 878 878 HOH HOH . O 9 HOH H 7 881 881 HOH HOH . O 9 HOH H 8 890 890 HOH HOH . O 9 HOH H 9 899 899 HOH HOH . O 9 HOH H 10 900 900 HOH HOH . O 9 HOH H 11 902 902 HOH HOH . O 9 HOH H 12 910 910 HOH HOH . O 9 HOH H 13 914 914 HOH HOH . O 9 HOH H 14 915 915 HOH HOH . O 9 HOH H 15 917 917 HOH HOH . O 9 HOH H 16 924 924 HOH HOH . O 9 HOH H 17 926 926 HOH HOH . O 9 HOH H 18 935 935 HOH HOH . O 9 HOH H 19 936 936 HOH HOH . O 9 HOH H 20 940 940 HOH HOH . O 9 HOH H 21 946 946 HOH HOH . O 9 HOH H 22 949 949 HOH HOH . O 9 HOH H 23 950 950 HOH HOH . O 9 HOH H 24 951 951 HOH HOH . O 9 HOH H 25 953 953 HOH HOH . O 9 HOH H 26 957 957 HOH HOH . O 9 HOH H 27 958 958 HOH HOH . O 9 HOH H 28 959 959 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CM1 SPO . . . L 8 42.896 84.799 55.969 1 79.62 ? CM1 SPO 859 M 1 HETATM 2 O O1 SPO . . . L 8 43.893 86.006 55.949 1 79.62 ? O1 SPO 859 M 1 HETATM 3 C C1 SPO . . . L 8 45.079 86.12 54.888 1 79.62 ? C1 SPO 859 M 1 HETATM 4 C C2 SPO . . . L 8 46.287 86.729 55.598 1 78.38 ? C2 SPO 859 M 1 HETATM 5 C C3 SPO . . . L 8 45.501 84.744 54.32 1 79.62 ? C3 SPO 859 M 1 HETATM 6 C C4 SPO . . . L 8 44.754 87.094 53.752 1 79.62 ? C4 SPO 859 M 1 HETATM 7 C C5 SPO . . . L 8 43.345 87.317 53.513 1 79.62 ? C5 SPO 859 M 1 HETATM 8 C C6 SPO . . . L 8 42.921 88.23 52.393 1 79.62 ? C6 SPO 859 M 1 HETATM 9 C C7 SPO . . . L 8 41.66 88.852 52.248 1 79.62 ? C7 SPO 859 M 1 HETATM 10 C C8 SPO . . . L 8 40.632 88.535 53.386 1 79.62 ? C8 SPO 859 M 1 HETATM 11 C C9 SPO . . . L 8 41.48 89.652 51.141 1 79.62 ? C9 SPO 859 M 1 HETATM 12 C C10 SPO . . . L 8 40.191 90.394 50.82 1 78.38 ? C10 SPO 859 M 1 HETATM 13 C C11 SPO . . . L 8 40.198 91.233 49.55 1 79.62 ? C11 SPO 859 M 1 HETATM 14 C C12 SPO . . . L 8 39.046 91.557 48.856 1 79.62 ? C12 SPO 859 M 1 HETATM 15 C C13 SPO . . . L 8 37.615 91.059 49.345 1 79.62 ? C13 SPO 859 M 1 HETATM 16 C C14 SPO . . . L 8 39.281 92.365 47.72 1 77.86 ? C14 SPO 859 M 1 HETATM 17 C C15 SPO . . . L 8 38.117 92.872 46.822 1 69.96 ? C15 SPO 859 M 1 HETATM 18 C C16 SPO . . . L 8 38.259 93.789 45.546 1 72.71 ? C16 SPO 859 M 1 HETATM 19 C C17 SPO . . . L 8 37.06 94.185 44.873 1 74.82 ? C17 SPO 859 M 1 HETATM 20 C C18 SPO . . . L 8 35.664 93.753 45.349 1 77.51 ? C18 SPO 859 M 1 HETATM 21 C C19 SPO . . . L 8 37.052 95 43.744 1 79.62 ? C19 SPO 859 M 1 HETATM 22 C C20 SPO . . . L 8 38.172 95.535 43.097 1 79.62 ? C20 SPO 859 M 1 HETATM 23 C C21 SPO . . . L 8 38.007 96.706 42.162 1 73.42 ? C21 SPO 859 M 1 HETATM 24 C C22 SPO . . . L 8 39.27 97.123 41.551 1 73.86 ? C22 SPO 859 M 1 HETATM 25 C C23 SPO . . . L 8 39.469 97.454 40.221 1 73.41 ? C23 SPO 859 M 1 HETATM 26 C C24 SPO . . . L 8 38.505 98.524 39.652 1 79.62 ? C24 SPO 859 M 1 HETATM 27 C C25 SPO . . . L 8 40.84 97.734 40.196 1 79.62 ? C25 SPO 859 M 1 HETATM 28 C C26 SPO . . . L 8 41.591 98.139 38.997 1 79.62 ? C26 SPO 859 M 1 HETATM 29 C C27 SPO . . . L 8 43.047 98.378 39.144 1 75.8 ? C27 SPO 859 M 1 HETATM 30 C C28 SPO . . . L 8 43.84 98.771 38.059 1 76.36 ? C28 SPO 859 M 1 HETATM 31 C C29 SPO . . . L 8 43.335 99.009 36.6 1 71.51 ? C29 SPO 859 M 1 HETATM 32 C C30 SPO . . . L 8 45.357 99.02 38.214 1 79.62 ? C30 SPO 859 M 1 HETATM 33 C C31 SPO . . . L 8 45.651 100.342 38.894 1 76.95 ? C31 SPO 859 M 1 HETATM 34 C C32 SPO . . . L 8 46.952 100.822 38.649 1 79.62 ? C32 SPO 859 M 1 HETATM 35 C C33 SPO . . . L 8 47.746 101.752 39.354 1 79.62 ? C33 SPO 859 M 1 HETATM 36 C C34 SPO . . . L 8 47.292 102.473 40.626 1 79.62 ? C34 SPO 859 M 1 HETATM 37 C C35 SPO . . . L 8 49.205 102.176 38.917 1 79.62 ? C35 SPO 859 M 1 HETATM 38 C C36 SPO . . . L 8 50.332 101.131 39.045 1 79.62 ? C36 SPO 859 M 1 HETATM 39 C C37 SPO . . . L 8 51.535 101.49 38.19 1 79.62 ? C37 SPO 859 M 1 HETATM 40 C C38 SPO . . . L 8 51.77 101.383 36.795 1 79.62 ? C38 SPO 859 M 1 HETATM 41 C C39 SPO . . . L 8 52.321 100.13 36.058 1 79.62 ? C39 SPO 859 M 1 HETATM 42 C C40 SPO . . . L 8 51.511 102.528 35.794 1 79.62 ? C40 SPO 859 M 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 42 #