data_1JH7 # _model_server_result.job_id FEl7qrUKWnJlJ3acPLnIrQ _model_server_result.datetime_utc '2024-11-05 00:38:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jh7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 1JH7 # _exptl.entry_id 1JH7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 343.141 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "URIDINE-2',3'-VANADATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JH7 _cell.length_a 101.14 _cell.length_b 101.14 _cell.length_c 90 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JH7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3,4,5,6 A,B,C,D,E,F,G,H 3 1,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 101.14 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 50.57 87.589809 0 4 'crystal symmetry operation' 16_545 y+1/3,x-1/3,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 50.57 -29.196603 60 5 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 58.393206 60 6 'crystal symmetry operation' 18_655 -x+4/3,-x+y+2/3,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 101.14 58.393206 60 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 64 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 64 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 177 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 177 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.028 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H12 N2 O9 V' _chem_comp.formula_weight 343.141 _chem_comp.id UVC _chem_comp.mon_nstd_flag . _chem_comp.name "URIDINE-2',3'-VANADATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 UVC sing 341 n n N1 C6 UVC sing 342 n n N1 C1' UVC sing 343 n n C2 N3 UVC sing 344 n n C2 O2 UVC doub 345 n n N3 C4 UVC sing 346 n n N3 HN3 UVC sing 347 n n C4 C5 UVC sing 348 n n C4 O4 UVC doub 349 n n C5 C6 UVC doub 350 n n C5 H5 UVC sing 351 n n C6 H6 UVC sing 352 n n C1' C2' UVC sing 353 n n C1' O4' UVC sing 354 n n C1' H1' UVC sing 355 n n C2' O2' UVC sing 356 n n C2' C3' UVC sing 357 n n C2' H2' UVC sing 358 n n O2' V UVC sing 359 n n C3' C4' UVC sing 360 n n C3' O3' UVC sing 361 n n C3' H3' UVC sing 362 n n C4' O4' UVC sing 363 n n C4' C5' UVC sing 364 n n C4' H4' UVC sing 365 n n O3' V UVC sing 366 n n C5' O5' UVC sing 367 n n C5' "H5'1" UVC sing 368 n n C5' "H5'2" UVC sing 369 n n O5' HO5' UVC sing 370 n n V O1V UVC sing 371 n n V O2V UVC doub 372 n n V O3V UVC sing 373 n n O1V HOV1 UVC sing 374 n n O3V HOV3 UVC sing 375 n n # _atom_sites.entry_id 1JH7 _atom_sites.fract_transf_matrix[1][1] 0.009887 _atom_sites.fract_transf_matrix[1][2] 0.005708 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 212 212 SO4 SO4 . C 2 SO4 A 1 213 213 SO4 SO4 . D 2 SO4 A 1 214 214 SO4 SO4 . E 2 SO4 A 1 215 215 SO4 SO4 . F 3 UVC A 1 201 201 UVC UVD . G 3 UVC A 1 202 202 UVC UVD . H 4 HOH A 1 301 301 HOH TIP . H 4 HOH A 2 302 302 HOH TIP . H 4 HOH A 3 303 303 HOH TIP . H 4 HOH A 4 304 304 HOH TIP . H 4 HOH A 5 305 305 HOH TIP . H 4 HOH A 6 306 306 HOH TIP . H 4 HOH A 7 307 307 HOH TIP . H 4 HOH A 8 308 308 HOH TIP . H 4 HOH A 9 309 309 HOH TIP . H 4 HOH A 10 310 310 HOH TIP . H 4 HOH A 11 311 311 HOH TIP . H 4 HOH A 12 312 312 HOH TIP . H 4 HOH A 13 313 313 HOH TIP . H 4 HOH A 14 314 314 HOH TIP . H 4 HOH A 15 315 315 HOH TIP . H 4 HOH A 16 316 316 HOH TIP . H 4 HOH A 17 317 317 HOH TIP . H 4 HOH A 18 318 318 HOH TIP . H 4 HOH A 19 319 319 HOH TIP . H 4 HOH A 20 320 320 HOH TIP . H 4 HOH A 21 321 321 HOH TIP . H 4 HOH A 22 322 322 HOH TIP . H 4 HOH A 23 323 323 HOH TIP . H 4 HOH A 24 324 324 HOH TIP . H 4 HOH A 25 325 325 HOH TIP . H 4 HOH A 26 326 326 HOH TIP . H 4 HOH A 27 327 327 HOH TIP . H 4 HOH A 28 328 328 HOH TIP . H 4 HOH A 29 329 329 HOH TIP . H 4 HOH A 30 330 330 HOH TIP . H 4 HOH A 31 331 331 HOH TIP . H 4 HOH A 32 332 332 HOH TIP . H 4 HOH A 33 333 333 HOH TIP . H 4 HOH A 34 334 334 HOH TIP . H 4 HOH A 35 335 335 HOH TIP . H 4 HOH A 36 336 336 HOH TIP . H 4 HOH A 37 337 337 HOH TIP . H 4 HOH A 38 338 338 HOH TIP . H 4 HOH A 39 339 339 HOH TIP . H 4 HOH A 40 340 340 HOH TIP . H 4 HOH A 41 341 341 HOH TIP . H 4 HOH A 42 342 342 HOH TIP . H 4 HOH A 43 343 343 HOH TIP . H 4 HOH A 44 344 344 HOH TIP . H 4 HOH A 45 345 345 HOH TIP . H 4 HOH A 46 346 346 HOH TIP . H 4 HOH A 47 347 347 HOH TIP . H 4 HOH A 48 348 348 HOH TIP . H 4 HOH A 49 349 349 HOH TIP . H 4 HOH A 50 350 350 HOH TIP . H 4 HOH A 51 351 351 HOH TIP . H 4 HOH A 52 352 352 HOH TIP . H 4 HOH A 53 353 353 HOH TIP . H 4 HOH A 54 354 354 HOH TIP . H 4 HOH A 55 355 355 HOH TIP . H 4 HOH A 56 356 356 HOH TIP . H 4 HOH A 57 357 357 HOH TIP . H 4 HOH A 58 358 358 HOH TIP . H 4 HOH A 59 359 359 HOH TIP . H 4 HOH A 60 360 360 HOH TIP . H 4 HOH A 61 361 361 HOH TIP . H 4 HOH A 62 362 362 HOH TIP . H 4 HOH A 63 363 363 HOH TIP . H 4 HOH A 64 364 364 HOH TIP . H 4 HOH A 65 365 365 HOH TIP . H 4 HOH A 66 366 366 HOH TIP . H 4 HOH A 67 367 367 HOH TIP . H 4 HOH A 68 368 368 HOH TIP . H 4 HOH A 69 369 369 HOH TIP . H 4 HOH A 70 370 370 HOH TIP . H 4 HOH A 71 371 371 HOH TIP . H 4 HOH A 72 372 372 HOH TIP . H 4 HOH A 73 373 373 HOH TIP . H 4 HOH A 74 374 374 HOH TIP . H 4 HOH A 75 375 375 HOH TIP . H 4 HOH A 76 376 376 HOH TIP . H 4 HOH A 77 377 377 HOH TIP . H 4 HOH A 78 378 378 HOH TIP . H 4 HOH A 79 379 379 HOH TIP . H 4 HOH A 80 380 380 HOH TIP . H 4 HOH A 81 381 381 HOH TIP . H 4 HOH A 82 382 382 HOH TIP . H 4 HOH A 83 383 383 HOH TIP . H 4 HOH A 84 384 384 HOH TIP . H 4 HOH A 85 385 385 HOH TIP . H 4 HOH A 86 386 386 HOH TIP . H 4 HOH A 87 387 387 HOH TIP . H 4 HOH A 88 388 388 HOH TIP . H 4 HOH A 89 389 389 HOH TIP . H 4 HOH A 90 390 390 HOH TIP . H 4 HOH A 91 391 391 HOH TIP . H 4 HOH A 92 392 392 HOH TIP . H 4 HOH A 93 393 393 HOH TIP . H 4 HOH A 94 394 394 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UVC . . . F 3 40.718 46.051 22.058 1 80.69 ? N1 UVC 201 A 1 HETATM 2 C C2 UVC . . . F 3 41.875 45.255 22.51 1 82.52 ? C2 UVC 201 A 1 HETATM 3 N N3 UVC . . . F 3 42.706 45.8 23.561 1 82.86 ? N3 UVC 201 A 1 HETATM 4 C C4 UVC . . . F 3 42.438 47.093 24.185 1 84.8 ? C4 UVC 201 A 1 HETATM 5 C C5 UVC . . . F 3 41.249 47.838 23.683 1 84.4 ? C5 UVC 201 A 1 HETATM 6 C C6 UVC . . . F 3 40.464 47.33 22.685 1 81.85 ? C6 UVC 201 A 1 HETATM 7 O O2 UVC . . . F 3 42.172 44.155 22.045 1 83.62 ? O2 UVC 201 A 1 HETATM 8 O O4 UVC . . . F 3 43.22 47.452 25.076 1 81.76 ? O4 UVC 201 A 1 HETATM 9 C C1' UVC . . . F 3 39.749 45.667 20.929 1 76.32 ? C1' UVC 201 A 1 HETATM 10 C C2' UVC . . . F 3 40.3 44.65 19.89 1 72.62 ? C2' UVC 201 A 1 HETATM 11 O O2' UVC . . . F 3 40.399 45.174 18.615 1 69.81 ? O2' UVC 201 A 1 HETATM 12 C C3' UVC . . . F 3 39.258 43.492 19.877 1 72.95 ? C3' UVC 201 A 1 HETATM 13 C C4' UVC . . . F 3 38.161 43.889 20.897 1 72.33 ? C4' UVC 201 A 1 HETATM 14 O O3' UVC . . . F 3 38.759 43.353 18.586 1 72.07 ? O3' UVC 201 A 1 HETATM 15 O O4' UVC . . . F 3 38.529 45.173 21.484 1 74 ? O4' UVC 201 A 1 HETATM 16 C C5' UVC . . . F 3 37.928 42.813 21.971 1 72.1 ? C5' UVC 201 A 1 HETATM 17 O O5' UVC . . . F 3 37.194 41.726 21.466 1 67.63 ? O5' UVC 201 A 1 HETATM 18 V V UVC . . . F 3 39.371 44.427 17.408 1 63.71 ? V UVC 201 A 1 HETATM 19 O O1V UVC . . . F 3 38.367 45.756 17.241 1 67.7 ? O1V UVC 201 A 1 HETATM 20 O O2V UVC . . . F 3 38.711 43.45 16.214 1 68.73 ? O2V UVC 201 A 1 HETATM 21 O O3V UVC . . . F 3 40.67 44.302 16.367 1 67.26 ? O3V UVC 201 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #