data_1JH8 # _model_server_result.job_id ZXM_mecam3zg1PxJx0BaEQ _model_server_result.datetime_utc '2024-11-08 03:01:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jh8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":999}' # _entry.id 1JH8 # _exptl.entry_id 1JH8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JH8 _cell.length_a 71.6 _cell.length_b 90 _cell.length_c 47.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JH8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.6 90 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.528 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 ADE sing 1 n y N9 C4 ADE sing 2 n y N9 HN9 ADE sing 3 n n C8 N7 ADE doub 4 n y C8 H8 ADE sing 5 n n N7 C5 ADE sing 6 n y C5 C6 ADE sing 7 n y C5 C4 ADE doub 8 n y C6 N6 ADE sing 9 n n C6 N1 ADE doub 10 n y N6 HN61 ADE sing 11 n n N6 HN62 ADE sing 12 n n N1 C2 ADE sing 13 n y C2 N3 ADE doub 14 n y C2 H2 ADE sing 15 n n N3 C4 ADE sing 16 n y # _atom_sites.entry_id 1JH8 _atom_sites.fract_transf_matrix[1][1] 0.013966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 998 998 PO4 PI . C 2 PO4 A 1 997 997 PO4 PI . D 3 ADE A 1 999 999 ADE ADE . E 4 HOH A 1 401 401 HOH WAT . E 4 HOH A 2 402 402 HOH WAT . E 4 HOH A 3 403 403 HOH WAT . E 4 HOH A 4 404 404 HOH WAT . E 4 HOH A 5 405 405 HOH WAT . E 4 HOH A 6 406 406 HOH WAT . E 4 HOH A 7 407 407 HOH WAT . E 4 HOH A 8 408 408 HOH WAT . E 4 HOH A 9 409 409 HOH WAT . E 4 HOH A 10 410 410 HOH WAT . E 4 HOH A 11 411 411 HOH WAT . E 4 HOH A 12 412 412 HOH WAT . E 4 HOH A 13 413 413 HOH WAT . E 4 HOH A 14 414 414 HOH WAT . E 4 HOH A 15 415 415 HOH WAT . E 4 HOH A 16 416 416 HOH WAT . E 4 HOH A 17 417 417 HOH WAT . E 4 HOH A 18 418 418 HOH WAT . E 4 HOH A 19 419 419 HOH WAT . E 4 HOH A 20 420 420 HOH WAT . E 4 HOH A 21 421 421 HOH WAT . E 4 HOH A 22 422 422 HOH WAT . E 4 HOH A 23 423 423 HOH WAT . E 4 HOH A 24 424 424 HOH WAT . E 4 HOH A 25 425 425 HOH WAT . E 4 HOH A 26 426 426 HOH WAT . E 4 HOH A 27 427 427 HOH WAT . E 4 HOH A 28 428 428 HOH WAT . E 4 HOH A 29 429 429 HOH WAT . E 4 HOH A 30 430 430 HOH WAT . E 4 HOH A 31 431 431 HOH WAT . E 4 HOH A 32 432 432 HOH WAT . E 4 HOH A 33 433 433 HOH WAT . E 4 HOH A 34 434 434 HOH WAT . E 4 HOH A 35 436 436 HOH WAT . E 4 HOH A 36 437 437 HOH WAT . E 4 HOH A 37 438 438 HOH WAT . E 4 HOH A 38 439 439 HOH WAT . E 4 HOH A 39 440 440 HOH WAT . E 4 HOH A 40 441 441 HOH WAT . E 4 HOH A 41 442 442 HOH WAT . E 4 HOH A 42 443 443 HOH WAT . E 4 HOH A 43 444 444 HOH WAT . E 4 HOH A 44 445 445 HOH WAT . E 4 HOH A 45 446 446 HOH WAT . E 4 HOH A 46 447 447 HOH WAT . E 4 HOH A 47 448 448 HOH WAT . E 4 HOH A 48 449 449 HOH WAT . E 4 HOH A 49 450 450 HOH WAT . E 4 HOH A 50 451 451 HOH WAT . E 4 HOH A 51 452 452 HOH WAT . E 4 HOH A 52 453 453 HOH WAT . E 4 HOH A 53 454 454 HOH WAT . E 4 HOH A 54 455 455 HOH WAT . E 4 HOH A 55 456 456 HOH WAT . E 4 HOH A 56 457 457 HOH WAT . E 4 HOH A 57 459 459 HOH WAT . E 4 HOH A 58 460 460 HOH WAT . E 4 HOH A 59 461 461 HOH WAT . E 4 HOH A 60 462 462 HOH WAT . E 4 HOH A 61 463 463 HOH WAT . E 4 HOH A 62 464 464 HOH WAT . E 4 HOH A 63 465 465 HOH WAT . E 4 HOH A 64 466 466 HOH WAT . E 4 HOH A 65 467 467 HOH WAT . E 4 HOH A 66 468 468 HOH WAT . E 4 HOH A 67 469 469 HOH WAT . E 4 HOH A 68 470 470 HOH WAT . E 4 HOH A 69 471 471 HOH WAT . E 4 HOH A 70 472 472 HOH WAT . E 4 HOH A 71 473 473 HOH WAT . E 4 HOH A 72 474 474 HOH WAT . E 4 HOH A 73 475 475 HOH WAT . E 4 HOH A 74 476 476 HOH WAT . E 4 HOH A 75 477 477 HOH WAT . E 4 HOH A 76 478 478 HOH WAT . E 4 HOH A 77 479 479 HOH WAT . E 4 HOH A 78 480 480 HOH WAT . E 4 HOH A 79 481 481 HOH WAT . E 4 HOH A 80 482 482 HOH WAT . E 4 HOH A 81 483 483 HOH WAT . E 4 HOH A 82 484 484 HOH WAT . E 4 HOH A 83 485 485 HOH WAT . E 4 HOH A 84 486 486 HOH WAT . E 4 HOH A 85 487 487 HOH WAT . E 4 HOH A 86 488 488 HOH WAT . E 4 HOH A 87 489 489 HOH WAT . E 4 HOH A 88 490 490 HOH WAT . E 4 HOH A 89 491 491 HOH WAT . E 4 HOH A 90 492 492 HOH WAT . E 4 HOH A 91 493 493 HOH WAT . E 4 HOH A 92 494 494 HOH WAT . E 4 HOH A 93 495 495 HOH WAT . E 4 HOH A 94 496 496 HOH WAT . E 4 HOH A 95 497 497 HOH WAT . E 4 HOH A 96 498 498 HOH WAT . E 4 HOH A 97 499 499 HOH WAT . E 4 HOH A 98 500 500 HOH WAT . E 4 HOH A 99 501 501 HOH WAT . E 4 HOH A 100 502 502 HOH WAT . E 4 HOH A 101 503 503 HOH WAT . E 4 HOH A 102 505 505 HOH WAT . E 4 HOH A 103 506 506 HOH WAT . E 4 HOH A 104 508 508 HOH WAT . E 4 HOH A 105 509 509 HOH WAT . E 4 HOH A 106 510 510 HOH WAT . E 4 HOH A 107 511 511 HOH WAT . E 4 HOH A 108 512 512 HOH WAT . E 4 HOH A 109 513 513 HOH WAT . E 4 HOH A 110 514 514 HOH WAT . E 4 HOH A 111 515 515 HOH WAT . E 4 HOH A 112 516 516 HOH WAT . E 4 HOH A 113 518 518 HOH WAT . E 4 HOH A 114 521 521 HOH WAT . E 4 HOH A 115 523 523 HOH WAT . E 4 HOH A 116 524 524 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . D 3 56.354 41.809 14.407 1 20.51 ? N9 ADE 999 A 1 HETATM 2 C C8 ADE . . . D 3 56.119 41.058 13.291 1 25.22 ? C8 ADE 999 A 1 HETATM 3 N N7 ADE . . . D 3 57.031 41.252 12.314 1 24.5 ? N7 ADE 999 A 1 HETATM 4 C C5 ADE . . . D 3 57.919 42.172 12.861 1 32.67 ? C5 ADE 999 A 1 HETATM 5 C C6 ADE . . . D 3 59.104 42.777 12.35 1 27.57 ? C6 ADE 999 A 1 HETATM 6 N N6 ADE . . . D 3 59.661 42.557 11.152 1 21.15 ? N6 ADE 999 A 1 HETATM 7 N N1 ADE . . . D 3 59.715 43.689 13.151 1 22.22 ? N1 ADE 999 A 1 HETATM 8 C C2 ADE . . . D 3 59.189 43.934 14.392 1 21.19 ? C2 ADE 999 A 1 HETATM 9 N N3 ADE . . . D 3 58.114 43.442 14.944 1 28.23 ? N3 ADE 999 A 1 HETATM 10 C C4 ADE . . . D 3 57.508 42.545 14.133 1 27.45 ? C4 ADE 999 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 79 _model_server_stats.create_model_time_ms 74 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #