data_1JHM # _model_server_result.job_id rWVOhl7-VTmu77bYxGlrdw _model_server_result.datetime_utc '2024-11-23 04:04:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jhm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":990}' # _entry.id 1JHM # _exptl.entry_id 1JHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.163 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-METHYLBENZIMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JHM _cell.length_a 71.82 _cell.length_b 90.05 _cell.length_c 47.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.82 90.05 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.026 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H8 N2' _chem_comp.formula_weight 132.163 _chem_comp.id 5MB _chem_comp.mon_nstd_flag . _chem_comp.name 5-METHYLBENZIMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C2 5MB sing 1 n y N3 C3A 5MB sing 2 n y N3 HN31 5MB sing 3 n n N1 C2 5MB doub 4 n y N1 C7A 5MB sing 5 n y C2 H21 5MB sing 6 n n C7A C3A 5MB doub 7 n y C7A C7 5MB sing 8 n y C3A C4 5MB sing 9 n y C4 C5 5MB doub 10 n y C4 H41 5MB sing 11 n n C5 C6 5MB sing 12 n y C5 C8 5MB sing 13 n n C6 C7 5MB doub 14 n y C6 H61 5MB sing 15 n n C7 H71 5MB sing 16 n n C8 H81 5MB sing 17 n n C8 H82 5MB sing 18 n n C8 H83 5MB sing 19 n n # _atom_sites.entry_id 1JHM _atom_sites.fract_transf_matrix[1][1] 0.013924 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 992 992 PO4 PI . C 2 PO4 A 1 991 991 PO4 PI . D 3 5MB A 1 990 990 5MB MEB . E 4 HOH A 1 1001 1001 HOH WAT . E 4 HOH A 2 1002 1002 HOH WAT . E 4 HOH A 3 1003 1003 HOH WAT . E 4 HOH A 4 1004 1004 HOH WAT . E 4 HOH A 5 1005 1005 HOH WAT . E 4 HOH A 6 1006 1006 HOH WAT . E 4 HOH A 7 1007 1007 HOH WAT . E 4 HOH A 8 1008 1008 HOH WAT . E 4 HOH A 9 1009 1009 HOH WAT . E 4 HOH A 10 1010 1010 HOH WAT . E 4 HOH A 11 1011 1011 HOH WAT . E 4 HOH A 12 1012 1012 HOH WAT . E 4 HOH A 13 1013 1013 HOH WAT . E 4 HOH A 14 1014 1014 HOH WAT . E 4 HOH A 15 1015 1015 HOH WAT . E 4 HOH A 16 1016 1016 HOH WAT . E 4 HOH A 17 1017 1017 HOH WAT . E 4 HOH A 18 1018 1018 HOH WAT . E 4 HOH A 19 1019 1019 HOH WAT . E 4 HOH A 20 1020 1020 HOH WAT . E 4 HOH A 21 1021 1021 HOH WAT . E 4 HOH A 22 1022 1022 HOH WAT . E 4 HOH A 23 1023 1023 HOH WAT . E 4 HOH A 24 1024 1024 HOH WAT . E 4 HOH A 25 1025 1025 HOH WAT . E 4 HOH A 26 1026 1026 HOH WAT . E 4 HOH A 27 1028 1028 HOH WAT . E 4 HOH A 28 1029 1029 HOH WAT . E 4 HOH A 29 1030 1030 HOH WAT . E 4 HOH A 30 1031 1031 HOH WAT . E 4 HOH A 31 1032 1032 HOH WAT . E 4 HOH A 32 1033 1033 HOH WAT . E 4 HOH A 33 1034 1034 HOH WAT . E 4 HOH A 34 1035 1035 HOH WAT . E 4 HOH A 35 1036 1036 HOH WAT . E 4 HOH A 36 1037 1037 HOH WAT . E 4 HOH A 37 1038 1038 HOH WAT . E 4 HOH A 38 1039 1039 HOH WAT . E 4 HOH A 39 1040 1040 HOH WAT . E 4 HOH A 40 1041 1041 HOH WAT . E 4 HOH A 41 1042 1042 HOH WAT . E 4 HOH A 42 1043 1043 HOH WAT . E 4 HOH A 43 1044 1044 HOH WAT . E 4 HOH A 44 1046 1046 HOH WAT . E 4 HOH A 45 1048 1048 HOH WAT . E 4 HOH A 46 1049 1049 HOH WAT . E 4 HOH A 47 1050 1050 HOH WAT . E 4 HOH A 48 1051 1051 HOH WAT . E 4 HOH A 49 1052 1052 HOH WAT . E 4 HOH A 50 1053 1053 HOH WAT . E 4 HOH A 51 1054 1054 HOH WAT . E 4 HOH A 52 1055 1055 HOH WAT . E 4 HOH A 53 1056 1056 HOH WAT . E 4 HOH A 54 1058 1058 HOH WAT . E 4 HOH A 55 1059 1059 HOH WAT . E 4 HOH A 56 1060 1060 HOH WAT . E 4 HOH A 57 1061 1061 HOH WAT . E 4 HOH A 58 1062 1062 HOH WAT . E 4 HOH A 59 1063 1063 HOH WAT . E 4 HOH A 60 1064 1064 HOH WAT . E 4 HOH A 61 1065 1065 HOH WAT . E 4 HOH A 62 1066 1066 HOH WAT . E 4 HOH A 63 1067 1067 HOH WAT . E 4 HOH A 64 1068 1068 HOH WAT . E 4 HOH A 65 1069 1069 HOH WAT . E 4 HOH A 66 1070 1070 HOH WAT . E 4 HOH A 67 1071 1071 HOH WAT . E 4 HOH A 68 1072 1072 HOH WAT . E 4 HOH A 69 1074 1074 HOH WAT . E 4 HOH A 70 1076 1076 HOH WAT . E 4 HOH A 71 1079 1079 HOH WAT . E 4 HOH A 72 1080 1080 HOH WAT . E 4 HOH A 73 1081 1081 HOH WAT . E 4 HOH A 74 1082 1082 HOH WAT . E 4 HOH A 75 1083 1083 HOH WAT . E 4 HOH A 76 1084 1084 HOH WAT . E 4 HOH A 77 1085 1085 HOH WAT . E 4 HOH A 78 1086 1086 HOH WAT . E 4 HOH A 79 1087 1087 HOH WAT . E 4 HOH A 80 1088 1088 HOH WAT . E 4 HOH A 81 1089 1089 HOH WAT . E 4 HOH A 82 1090 1090 HOH WAT . E 4 HOH A 83 1091 1091 HOH WAT . E 4 HOH A 84 1092 1092 HOH WAT . E 4 HOH A 85 1094 1094 HOH WAT . E 4 HOH A 86 1095 1095 HOH WAT . E 4 HOH A 87 1096 1096 HOH WAT . E 4 HOH A 88 1097 1097 HOH WAT . E 4 HOH A 89 1098 1098 HOH WAT . E 4 HOH A 90 1099 1099 HOH WAT . E 4 HOH A 91 1101 1101 HOH WAT . E 4 HOH A 92 1102 1102 HOH WAT . E 4 HOH A 93 1103 1103 HOH WAT . E 4 HOH A 94 1105 1105 HOH WAT . E 4 HOH A 95 1107 1107 HOH WAT . E 4 HOH A 96 1108 1108 HOH WAT . E 4 HOH A 97 1109 1109 HOH WAT . E 4 HOH A 98 1110 1110 HOH WAT . E 4 HOH A 99 1111 1111 HOH WAT . E 4 HOH A 100 1112 1112 HOH WAT . E 4 HOH A 101 1114 1114 HOH WAT . E 4 HOH A 102 1115 1115 HOH WAT . E 4 HOH A 103 1116 1116 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 5MB . . . D 3 56.464 41.65 14.497 1 33.11 ? N3 5MB 990 A 1 HETATM 2 N N1 5MB . . . D 3 57.052 40.958 12.457 1 30.48 ? N1 5MB 990 A 1 HETATM 3 C C2 5MB . . . D 3 56.205 40.802 13.495 1 47.54 ? C2 5MB 990 A 1 HETATM 4 C C7A 5MB . . . D 3 57.928 41.983 12.844 1 26.52 ? C7A 5MB 990 A 1 HETATM 5 C C3A 5MB . . . D 3 57.564 42.402 14.1 1 9.6 ? C3A 5MB 990 A 1 HETATM 6 C C4 5MB . . . D 3 58.293 43.411 14.728 1 22.45 ? C4 5MB 990 A 1 HETATM 7 C C5 5MB . . . D 3 59.367 44.006 14.082 1 41.33 ? C5 5MB 990 A 1 HETATM 8 C C6 5MB . . . D 3 59.757 43.578 12.789 1 19.59 ? C6 5MB 990 A 1 HETATM 9 C C7 5MB . . . D 3 59.055 42.551 12.189 1 17.35 ? C7 5MB 990 A 1 HETATM 10 C C8 5MB . . . D 3 60.106 45.125 14.789 1 34.5 ? C8 5MB 990 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #