data_1JHQ # _model_server_result.job_id YKWEY6HV793rJ-iL5PSVxg _model_server_result.datetime_utc '2024-11-23 04:40:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jhq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":990}' # _entry.id 1JHQ # _exptl.entry_id 1JHQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.256 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N1-(5'-PHOSPHO-ALPHA-RIBOSYL)-5-METHOXYBENZIMIDAZOLE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JHQ _cell.length_a 71.75 _cell.length_b 89.97 _cell.length_c 47.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.75 89.97 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.491 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H17 N2 O8 P' _chem_comp.formula_weight 360.256 _chem_comp.id PMO _chem_comp.mon_nstd_flag . _chem_comp.name "N1-(5'-PHOSPHO-ALPHA-RIBOSYL)-5-METHOXYBENZIMIDAZOLE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPORIC ACID MONO-[3,4-DIHYDROXY-5-(5-METHOXY-BENZOIMIDAZOL-1-YL)-TETRAHYDRO-FURAN-2-YLMETHYL] ESTER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C2 PMO doub 274 n y N3 C3A PMO sing 275 n y N1 C2 PMO sing 276 n y N1 C7A PMO sing 277 n y N1 C1' PMO sing 278 n n C2 H21 PMO sing 279 n n C7A C3A PMO doub 280 n y C7A C7 PMO sing 281 n y C3A C4 PMO sing 282 n y C4 C5 PMO doub 283 n y C4 H41 PMO sing 284 n n C5 C6 PMO sing 285 n y C5 O10 PMO sing 286 n n C6 C7 PMO doub 287 n y C6 H61 PMO sing 288 n n C7 H71 PMO sing 289 n n O10 C11 PMO sing 290 n n C11 H111 PMO sing 291 n n C11 H112 PMO sing 292 n n C11 H113 PMO sing 293 n n P O1P PMO doub 294 n n P O2P PMO sing 295 n n P O3P PMO sing 296 n n P O5' PMO sing 297 n n O2P HOP2 PMO sing 298 n n O3P HOP3 PMO sing 299 n n O5' C5' PMO sing 300 n n C5' C4' PMO sing 301 n n C5' "H5'1" PMO sing 302 n n C5' "H5'2" PMO sing 303 n n C4' O4' PMO sing 304 n n C4' C3' PMO sing 305 n n C4' H4' PMO sing 306 n n O4' C1' PMO sing 307 n n C3' O3' PMO sing 308 n n C3' C2' PMO sing 309 n n C3' H3' PMO sing 310 n n O3' HO3' PMO sing 311 n n C2' O2' PMO sing 312 n n C2' C1' PMO sing 313 n n C2' H2' PMO sing 314 n n O2' HO2' PMO sing 315 n n C1' H1' PMO sing 316 n n # _atom_sites.entry_id 1JHQ _atom_sites.fract_transf_matrix[1][1] 0.013937 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PMO A 1 990 990 PMO PMO . C 3 NIO A 1 991 991 NIO NIC . D 4 HOH A 1 1001 1001 HOH WAT . D 4 HOH A 2 1002 1002 HOH WAT . D 4 HOH A 3 1003 1003 HOH WAT . D 4 HOH A 4 1004 1004 HOH WAT . D 4 HOH A 5 1005 1005 HOH WAT . D 4 HOH A 6 1006 1006 HOH WAT . D 4 HOH A 7 1007 1007 HOH WAT . D 4 HOH A 8 1008 1008 HOH WAT . D 4 HOH A 9 1009 1009 HOH WAT . D 4 HOH A 10 1010 1010 HOH WAT . D 4 HOH A 11 1011 1011 HOH WAT . D 4 HOH A 12 1012 1012 HOH WAT . D 4 HOH A 13 1013 1013 HOH WAT . D 4 HOH A 14 1014 1014 HOH WAT . D 4 HOH A 15 1015 1015 HOH WAT . D 4 HOH A 16 1016 1016 HOH WAT . D 4 HOH A 17 1017 1017 HOH WAT . D 4 HOH A 18 1018 1018 HOH WAT . D 4 HOH A 19 1019 1019 HOH WAT . D 4 HOH A 20 1020 1020 HOH WAT . D 4 HOH A 21 1021 1021 HOH WAT . D 4 HOH A 22 1022 1022 HOH WAT . D 4 HOH A 23 1023 1023 HOH WAT . D 4 HOH A 24 1024 1024 HOH WAT . D 4 HOH A 25 1025 1025 HOH WAT . D 4 HOH A 26 1026 1026 HOH WAT . D 4 HOH A 27 1027 1027 HOH WAT . D 4 HOH A 28 1028 1028 HOH WAT . D 4 HOH A 29 1029 1029 HOH WAT . D 4 HOH A 30 1030 1030 HOH WAT . D 4 HOH A 31 1031 1031 HOH WAT . D 4 HOH A 32 1032 1032 HOH WAT . D 4 HOH A 33 1033 1033 HOH WAT . D 4 HOH A 34 1034 1034 HOH WAT . D 4 HOH A 35 1035 1035 HOH WAT . D 4 HOH A 36 1036 1036 HOH WAT . D 4 HOH A 37 1037 1037 HOH WAT . D 4 HOH A 38 1038 1038 HOH WAT . D 4 HOH A 39 1039 1039 HOH WAT . D 4 HOH A 40 1040 1040 HOH WAT . D 4 HOH A 41 1041 1041 HOH WAT . D 4 HOH A 42 1042 1042 HOH WAT . D 4 HOH A 43 1043 1043 HOH WAT . D 4 HOH A 44 1044 1044 HOH WAT . D 4 HOH A 45 1045 1045 HOH WAT . D 4 HOH A 46 1046 1046 HOH WAT . D 4 HOH A 47 1047 1047 HOH WAT . D 4 HOH A 48 1048 1048 HOH WAT . D 4 HOH A 49 1049 1049 HOH WAT . D 4 HOH A 50 1050 1050 HOH WAT . D 4 HOH A 51 1051 1051 HOH WAT . D 4 HOH A 52 1052 1052 HOH WAT . D 4 HOH A 53 1053 1053 HOH WAT . D 4 HOH A 54 1054 1054 HOH WAT . D 4 HOH A 55 1055 1055 HOH WAT . D 4 HOH A 56 1056 1056 HOH WAT . D 4 HOH A 57 1057 1057 HOH WAT . D 4 HOH A 58 1058 1058 HOH WAT . D 4 HOH A 59 1059 1059 HOH WAT . D 4 HOH A 60 1060 1060 HOH WAT . D 4 HOH A 61 1061 1061 HOH WAT . D 4 HOH A 62 1062 1062 HOH WAT . D 4 HOH A 63 1063 1063 HOH WAT . D 4 HOH A 64 1064 1064 HOH WAT . D 4 HOH A 65 1065 1065 HOH WAT . D 4 HOH A 66 1066 1066 HOH WAT . D 4 HOH A 67 1067 1067 HOH WAT . D 4 HOH A 68 1069 1069 HOH WAT . D 4 HOH A 69 1070 1070 HOH WAT . D 4 HOH A 70 1071 1071 HOH WAT . D 4 HOH A 71 1072 1072 HOH WAT . D 4 HOH A 72 1073 1073 HOH WAT . D 4 HOH A 73 1076 1076 HOH WAT . D 4 HOH A 74 1077 1077 HOH WAT . D 4 HOH A 75 1078 1078 HOH WAT . D 4 HOH A 76 1079 1079 HOH WAT . D 4 HOH A 77 1080 1080 HOH WAT . D 4 HOH A 78 1081 1081 HOH WAT . D 4 HOH A 79 1082 1082 HOH WAT . D 4 HOH A 80 1084 1084 HOH WAT . D 4 HOH A 81 1085 1085 HOH WAT . D 4 HOH A 82 1086 1086 HOH WAT . D 4 HOH A 83 1087 1087 HOH WAT . D 4 HOH A 84 1088 1088 HOH WAT . D 4 HOH A 85 1089 1089 HOH WAT . D 4 HOH A 86 1090 1090 HOH WAT . D 4 HOH A 87 1091 1091 HOH WAT . D 4 HOH A 88 1092 1092 HOH WAT . D 4 HOH A 89 1093 1093 HOH WAT . D 4 HOH A 90 1094 1094 HOH WAT . D 4 HOH A 91 1095 1095 HOH WAT . D 4 HOH A 92 1096 1096 HOH WAT . D 4 HOH A 93 1097 1097 HOH WAT . D 4 HOH A 94 1098 1098 HOH WAT . D 4 HOH A 95 1099 1099 HOH WAT . D 4 HOH A 96 1100 1100 HOH WAT . D 4 HOH A 97 1101 1101 HOH WAT . D 4 HOH A 98 1102 1102 HOH WAT . D 4 HOH A 99 1104 1104 HOH WAT . D 4 HOH A 100 1106 1106 HOH WAT . D 4 HOH A 101 1107 1107 HOH WAT . D 4 HOH A 102 1108 1108 HOH WAT . D 4 HOH A 103 1109 1109 HOH WAT . D 4 HOH A 104 1110 1110 HOH WAT . D 4 HOH A 105 1111 1111 HOH WAT . D 4 HOH A 106 1112 1112 HOH WAT . D 4 HOH A 107 1113 1113 HOH WAT . D 4 HOH A 108 1114 1114 HOH WAT . D 4 HOH A 109 1115 1115 HOH WAT . D 4 HOH A 110 1116 1116 HOH WAT . D 4 HOH A 111 1117 1117 HOH WAT . D 4 HOH A 112 1118 1118 HOH WAT . D 4 HOH A 113 1119 1119 HOH WAT . D 4 HOH A 114 1120 1120 HOH WAT . D 4 HOH A 115 1121 1121 HOH WAT . D 4 HOH A 116 1122 1122 HOH WAT . D 4 HOH A 117 1123 1123 HOH WAT . D 4 HOH A 118 1124 1124 HOH WAT . D 4 HOH A 119 1125 1125 HOH WAT . D 4 HOH A 120 1127 1127 HOH WAT . D 4 HOH A 121 1128 1128 HOH WAT . D 4 HOH A 122 1129 1129 HOH WAT . D 4 HOH A 123 1130 1130 HOH WAT . D 4 HOH A 124 1131 1131 HOH WAT . D 4 HOH A 125 1132 1132 HOH WAT . D 4 HOH A 126 1133 1133 HOH WAT . D 4 HOH A 127 1134 1134 HOH WAT . D 4 HOH A 128 1135 1135 HOH WAT . D 4 HOH A 129 1136 1136 HOH WAT . D 4 HOH A 130 1137 1137 HOH WAT . D 4 HOH A 131 1138 1138 HOH WAT . D 4 HOH A 132 1139 1139 HOH WAT . D 4 HOH A 133 1140 1140 HOH WAT . D 4 HOH A 134 1141 1141 HOH WAT . D 4 HOH A 135 1142 1142 HOH WAT . D 4 HOH A 136 1143 1143 HOH WAT . D 4 HOH A 137 1144 1144 HOH WAT . D 4 HOH A 138 1146 1146 HOH WAT . D 4 HOH A 139 1147 1147 HOH WAT . D 4 HOH A 140 1148 1148 HOH WAT . D 4 HOH A 141 1149 1149 HOH WAT . D 4 HOH A 142 1150 1150 HOH WAT . D 4 HOH A 143 1151 1151 HOH WAT . D 4 HOH A 144 1152 1152 HOH WAT . D 4 HOH A 145 1153 1153 HOH WAT . D 4 HOH A 146 1154 1154 HOH WAT . D 4 HOH A 147 1155 1155 HOH WAT . D 4 HOH A 148 1156 1156 HOH WAT . D 4 HOH A 149 1158 1158 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 PMO . . . B 2 56.299 41.401 14.042 1 14.2 ? N3 PMO 990 A 1 HETATM 2 N N1 PMO . . . B 2 56.638 40.834 11.882 1 8.91 ? N1 PMO 990 A 1 HETATM 3 C C2 PMO . . . B 2 55.853 40.717 12.982 1 14.1 ? C2 PMO 990 A 1 HETATM 4 C C7A PMO . . . B 2 57.7 41.668 12.327 1 14.69 ? C7A PMO 990 A 1 HETATM 5 C C3A PMO . . . B 2 57.465 42.033 13.64 1 9.97 ? C3A PMO 990 A 1 HETATM 6 C C4 PMO . . . B 2 58.319 42.908 14.314 1 10.42 ? C4 PMO 990 A 1 HETATM 7 C C5 PMO . . . B 2 59.462 43.381 13.692 1 8.52 ? C5 PMO 990 A 1 HETATM 8 C C6 PMO . . . B 2 59.705 43.018 12.345 1 9.39 ? C6 PMO 990 A 1 HETATM 9 C C7 PMO . . . B 2 58.838 42.162 11.677 1 12.1 ? C7 PMO 990 A 1 HETATM 10 O O10 PMO . . . B 2 60.409 44.257 14.157 1 16.61 ? O10 PMO 990 A 1 HETATM 11 C C11 PMO . . . B 2 60.104 44.698 15.466 1 17.49 ? C11 PMO 990 A 1 HETATM 12 P P PMO . . . B 2 59.397 39.331 6.103 1 13.61 ? P PMO 990 A 1 HETATM 13 O O1P PMO . . . B 2 58.998 38.126 5.32 1 13.08 ? O1P PMO 990 A 1 HETATM 14 O O2P PMO . . . B 2 59.628 40.489 5.208 1 10.98 ? O2P PMO 990 A 1 HETATM 15 O O3P PMO . . . B 2 60.508 39.189 7.099 1 13.65 ? O3P PMO 990 A 1 HETATM 16 O O5' PMO . . . B 2 58.028 39.619 6.929 1 11.87 ? O5' PMO 990 A 1 HETATM 17 C C5' PMO . . . B 2 57.542 38.674 7.89 1 11.16 ? C5' PMO 990 A 1 HETATM 18 C C4' PMO . . . B 2 58.055 39.057 9.267 1 7.68 ? C4' PMO 990 A 1 HETATM 19 O O4' PMO . . . B 2 57.509 40.37 9.642 1 15.64 ? O4' PMO 990 A 1 HETATM 20 C C3' PMO . . . B 2 57.622 38.125 10.389 1 10.37 ? C3' PMO 990 A 1 HETATM 21 O O3' PMO . . . B 2 58.4 38.269 11.586 1 15.59 ? O3' PMO 990 A 1 HETATM 22 C C2' PMO . . . B 2 56.207 38.69 10.608 1 16.57 ? C2' PMO 990 A 1 HETATM 23 O O2' PMO . . . B 2 55.752 38.244 11.909 1 13.97 ? O2' PMO 990 A 1 HETATM 24 C C1' PMO . . . B 2 56.42 40.211 10.551 1 17.12 ? C1' PMO 990 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 24 #