data_1JII # _model_server_result.job_id -PlLcp7K41NAAX0dOFWUsg _model_server_result.datetime_utc '2024-10-18 23:33:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":421}' # _entry.id 1JII # _exptl.entry_id 1JII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.379 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (2,4,5,8-TETRAHYDROXY-7-OXA-2-AZA-BICYCLO[3.2.1]OCT-3-YL)- ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JII _cell.length_a 71.56 _cell.length_b 98.45 _cell.length_c 142.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JII _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 1,2 A,B 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_556 -x,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 0 0 213.195 3 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 142.13 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H23 N3 O9' _chem_comp.formula_weight 413.379 _chem_comp.id 383 _chem_comp.mon_nstd_flag . _chem_comp.name '[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (2,4,5,8-TETRAHYDROXY-7-OXA-2-AZA-BICYCLO[3.2.1]OCT-3-YL)- ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SB-219383 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 383 doub 1 n y C8 C9 383 sing 2 n y C8 H8 383 sing 3 n n C7 C12 383 sing 4 n y C7 H7 383 sing 5 n n C12 C11 383 doub 6 n y C12 O13 383 sing 7 n n C11 C10 383 sing 8 n y C11 H11 383 sing 9 n n C10 C9 383 doub 10 n y C10 H10 383 sing 11 n n C9 C14 383 sing 12 n n C14 C15 383 sing 13 n n C14 H141 383 sing 14 n n C14 H142 383 sing 15 n n C15 C17 383 sing 16 n n C15 N16 383 sing 17 n n C15 H15 383 sing 18 n n C17 N19 383 sing 19 n n C17 O18 383 doub 20 n n N19 C20 383 sing 21 n n N19 H19 383 sing 22 n n C20 C21 383 sing 23 n n C20 C6 383 sing 24 n n C20 H20 383 sing 25 n n C21 O23 383 sing 26 n n C21 O22 383 doub 27 n n O23 H23 383 sing 28 n n N16 H161 383 sing 29 n n N16 H162 383 sing 30 n n C6 N5 383 sing 31 n n C6 C1 383 sing 32 n n C6 H6 383 sing 33 n n N5 C4 383 sing 34 n n N5 O28 383 sing 35 n n C4 C3 383 sing 36 n n C4 O31 383 sing 37 n n C4 H4 383 sing 38 n n C3 C2 383 sing 39 n n C3 O32 383 sing 40 n n C3 H3 383 sing 41 n n C2 C1 383 sing 42 n n C2 O29 383 sing 43 n n C2 C30 383 sing 44 n n C1 O64 383 sing 45 n n C1 H1 383 sing 46 n n O28 H28 383 sing 47 n n O29 H29 383 sing 48 n n C30 O31 383 sing 49 n n C30 H301 383 sing 50 n n C30 H302 383 sing 51 n n O32 H32 383 sing 52 n n O64 H64 383 sing 53 n n O13 H13 383 sing 54 n n # _atom_sites.entry_id 1JII _atom_sites.fract_transf_matrix[1][1] 0.01397 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 383 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 421 _pdbx_nonpoly_scheme.auth_seq_num 321 _pdbx_nonpoly_scheme.pdb_mon_id 383 _pdbx_nonpoly_scheme.auth_mon_id 383 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 383 . . . B 2 -8.237 11.144 83.743 1 15 ? C8 383 421 A 1 HETATM 2 C C7 383 . . . B 2 -7.569 10.048 84.273 1 15 ? C7 383 421 A 1 HETATM 3 C C12 383 . . . B 2 -8.163 9.32 85.31 1 15 ? C12 383 421 A 1 HETATM 4 C C11 383 . . . B 2 -9.502 9.529 85.668 1 15 ? C11 383 421 A 1 HETATM 5 C C10 383 . . . B 2 -10.183 10.623 85.141 1 15 ? C10 383 421 A 1 HETATM 6 C C9 383 . . . B 2 -9.563 11.475 84.18 1 15 ? C9 383 421 A 1 HETATM 7 C C14 383 . . . B 2 -10.3 12.77 83.634 1 15 ? C14 383 421 A 1 HETATM 8 C C15 383 . . . B 2 -11.871 12.77 83.597 1 15 ? C15 383 421 A 1 HETATM 9 C C17 383 . . . B 2 -12.557 14.171 83.86 1 15 ? C17 383 421 A 1 HETATM 10 N N19 383 . . . B 2 -11.874 14.988 84.551 1 15 ? N19 383 421 A 1 HETATM 11 C C20 383 . . . B 2 -11.983 16.414 84.541 1 15 ? C20 383 421 A 1 HETATM 12 C C21 383 . . . B 2 -10.851 16.958 83.699 1 15 ? C21 383 421 A 1 HETATM 13 O O23 383 . . . B 2 -10.05 15.95 83.175 1 15 ? O23 383 421 A 1 HETATM 14 O O18 383 . . . B 2 -13.653 14.456 83.413 1 15 ? O18 383 421 A 1 HETATM 15 N N16 383 . . . B 2 -12.344 12.214 82.322 1 15 ? N16 383 421 A 1 HETATM 16 O O22 383 . . . B 2 -10.675 18.184 83.507 1 15 ? O22 383 421 A 1 HETATM 17 C C6 383 . . . B 2 -12.106 16.891 85.965 1 15 ? C6 383 421 A 1 HETATM 18 N N5 383 . . . B 2 -12.694 15.836 86.835 1 15 ? N5 383 421 A 1 HETATM 19 C C4 383 . . . B 2 -13.114 16.326 88.154 1 15 ? C4 383 421 A 1 HETATM 20 C C3 383 . . . B 2 -14.189 17.378 87.984 1 15 ? C3 383 421 A 1 HETATM 21 C C2 383 . . . B 2 -13.308 18.488 87.42 1 15 ? C2 383 421 A 1 HETATM 22 C C1 383 . . . B 2 -13.065 18.074 85.924 1 15 ? C1 383 421 A 1 HETATM 23 O O28 383 . . . B 2 -11.768 14.786 87.038 1 15 ? O28 383 421 A 1 HETATM 24 O O29 383 . . . B 2 -13.91 19.758 87.577 1 15 ? O29 383 421 A 1 HETATM 25 C C30 383 . . . B 2 -11.955 18.394 88.152 1 15 ? C30 383 421 A 1 HETATM 26 O O31 383 . . . B 2 -11.973 17.054 88.67 1 15 ? O31 383 421 A 1 HETATM 27 O O32 383 . . . B 2 -15.236 17.024 87.084 1 15 ? O32 383 421 A 1 HETATM 28 O O64 383 . . . B 2 -12.548 19.136 85.141 1 15 ? O64 383 421 A 1 HETATM 29 O O13 383 . . . B 2 -7.436 8.432 85.969 1 15 ? O13 383 421 A 1 # _model_server_stats.io_time_ms 144 _model_server_stats.parse_time_ms 60 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #