data_1JIJ # _model_server_result.job_id 23gKv4DLTodfBj6AivcxEw _model_server_result.datetime_utc '2025-03-01 04:19:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":421}' # _entry.id 1JIJ # _exptl.entry_id 1JIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 415.395 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]-(1,3,4,5-TETRAHYDROXY-4-HYDROXYMETHYL-PIPERIDIN-2-YL)- ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JIJ _cell.length_a 70.09 _cell.length_b 98.93 _cell.length_c 143.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JIJ _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 1,2 A,B 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_556 -x,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 0 0 214.71 3 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 143.14 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H25 N3 O9' _chem_comp.formula_weight 415.395 _chem_comp.id 629 _chem_comp.mon_nstd_flag . _chem_comp.name '[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]-(1,3,4,5-TETRAHYDROXY-4-HYDROXYMETHYL-PIPERIDIN-2-YL)- ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SB-239629 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 629 doub 1 n y C7 C12 629 sing 2 n y C7 H7 629 sing 3 n n C8 C9 629 sing 4 n y C8 H8 629 sing 5 n n C12 C11 629 doub 6 n y C12 O13 629 sing 7 n n C11 C10 629 sing 8 n y C11 H11 629 sing 9 n n C10 C9 629 doub 10 n y C10 H10 629 sing 11 n n C9 C14 629 sing 12 n n C14 C15 629 sing 13 n n C14 H141 629 sing 14 n n C14 H142 629 sing 15 n n C15 C17 629 sing 16 n n C15 N16 629 sing 17 n n C15 H15 629 sing 18 n n C17 N19 629 sing 19 n n C17 O18 629 doub 20 n n N19 C20 629 sing 21 n n N19 H19 629 sing 22 n n C20 C21 629 sing 23 n n C20 C6 629 sing 24 n n C20 H20 629 sing 25 n n C21 O23 629 sing 26 n n C21 O22 629 doub 27 n n O23 H23 629 sing 28 n n N16 H161 629 sing 29 n n N16 H162 629 sing 30 n n C6 N5 629 sing 31 n n C6 C1 629 sing 32 n n C6 H6 629 sing 33 n n N5 C4 629 sing 34 n n N5 O28 629 sing 35 n n C4 C3 629 sing 36 n n C4 H41 629 sing 37 n n C4 H42 629 sing 38 n n C3 C2 629 sing 39 n n C3 O32 629 sing 40 n n C3 H3 629 sing 41 n n C2 C1 629 sing 42 n n C2 O29 629 sing 43 n n C2 C30 629 sing 44 n n C1 O64 629 sing 45 n n C1 H1 629 sing 46 n n O28 H28 629 sing 47 n n O32 H32 629 sing 48 n n O29 H29 629 sing 49 n n C30 O31 629 sing 50 n n C30 H301 629 sing 51 n n C30 H302 629 sing 52 n n O31 H31 629 sing 53 n n O64 H64 629 sing 54 n n O13 H13 629 sing 55 n n # _atom_sites.entry_id 1JIJ _atom_sites.fract_transf_matrix[1][1] 0.01427 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 629 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 421 _pdbx_nonpoly_scheme.auth_seq_num 321 _pdbx_nonpoly_scheme.pdb_mon_id 629 _pdbx_nonpoly_scheme.auth_mon_id 629 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 629 . . . B 2 -7.31 10.22 84.985 1 15 ? C7 629 421 A 1 HETATM 2 C C8 629 . . . B 2 -7.91 11.407 84.561 1 15 ? C8 629 421 A 1 HETATM 3 C C12 629 . . . B 2 -8.039 9.306 85.75 1 15 ? C12 629 421 A 1 HETATM 4 C C11 629 . . . B 2 -9.387 9.556 86.055 1 15 ? C11 629 421 A 1 HETATM 5 C C10 629 . . . B 2 -10.002 10.699 85.55 1 15 ? C10 629 421 A 1 HETATM 6 C C9 629 . . . B 2 -9.25 11.666 84.862 1 15 ? C9 629 421 A 1 HETATM 7 C C14 629 . . . B 2 -9.912 12.983 84.456 1 15 ? C14 629 421 A 1 HETATM 8 C C15 629 . . . B 2 -11.452 12.936 84.364 1 15 ? C15 629 421 A 1 HETATM 9 C C17 629 . . . B 2 -12.131 14.357 84.202 1 15 ? C17 629 421 A 1 HETATM 10 N N19 629 . . . B 2 -11.667 15.295 85.031 1 15 ? N19 629 421 A 1 HETATM 11 C C20 629 . . . B 2 -12.001 16.74 85.051 1 15 ? C20 629 421 A 1 HETATM 12 C C21 629 . . . B 2 -10.903 17.498 84.274 1 15 ? C21 629 421 A 1 HETATM 13 O O23 629 . . . B 2 -9.692 16.859 84.234 1 15 ? O23 629 421 A 1 HETATM 14 O O18 629 . . . B 2 -13.02 14.556 83.378 1 15 ? O18 629 421 A 1 HETATM 15 N N16 629 . . . B 2 -11.818 11.973 83.303 1 15 ? N16 629 421 A 1 HETATM 16 O O22 629 . . . B 2 -11.104 18.584 83.737 1 15 ? O22 629 421 A 1 HETATM 17 C C6 629 . . . B 2 -12.27 17.262 86.444 1 15 ? C6 629 421 A 1 HETATM 18 N N5 629 . . . B 2 -12.439 16.082 87.439 1 15 ? N5 629 421 A 1 HETATM 19 C C4 629 . . . B 2 -13.072 16.305 88.817 1 15 ? C4 629 421 A 1 HETATM 20 C C3 629 . . . B 2 -14.301 17.176 88.664 1 15 ? C3 629 421 A 1 HETATM 21 C C2 629 . . . B 2 -13.81 18.468 88.065 1 15 ? C2 629 421 A 1 HETATM 22 C C1 629 . . . B 2 -13.548 18.12 86.542 1 15 ? C1 629 421 A 1 HETATM 23 O O28 629 . . . B 2 -11.414 15.213 87.492 1 15 ? O28 629 421 A 1 HETATM 24 O O32 629 . . . B 2 -15.236 16.557 87.786 1 15 ? O32 629 421 A 1 HETATM 25 O O29 629 . . . B 2 -14.841 19.471 88.201 1 15 ? O29 629 421 A 1 HETATM 26 C C30 629 . . . B 2 -12.548 19 88.856 1 15 ? C30 629 421 A 1 HETATM 27 O O31 629 . . . B 2 -11.312 18.417 88.412 1 15 ? O31 629 421 A 1 HETATM 28 O O64 629 . . . B 2 -13.426 19.339 85.783 1 15 ? O64 629 421 A 1 HETATM 29 O O13 629 . . . B 2 -7.442 8.163 86.187 1 15 ? O13 629 421 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #