data_1JIK # _model_server_result.job_id BZq98zPzXazlTUM2PvREbg _model_server_result.datetime_utc '2025-03-01 03:54:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":421}' # _entry.id 1JIK # _exptl.entry_id 1JIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 471.501 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]-(1,3,4,5-TETRAHYDROXY-4-HYDROXYMETHYL-PIPERIDIN-2-YL)- ACETIC ACID BUTYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JIK _cell.length_a 66.62 _cell.length_b 105.38 _cell.length_c 140.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JIK _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2 A,B,C 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_655 -x+1,-y+1/2,z -1 0 0 0 -1 0 0 0 1 66.62 52.69 0 3 'crystal symmetry operation' 7_556 -x+1/2,y,-z+1 -1 0 0 0 1 0 0 0 -1 33.31 0 140.58 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H33 N3 O9' _chem_comp.formula_weight 471.501 _chem_comp.id 545 _chem_comp.mon_nstd_flag . _chem_comp.name '[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]-(1,3,4,5-TETRAHYDROXY-4-HYDROXYMETHYL-PIPERIDIN-2-YL)- ACETIC ACID BUTYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SB-243545 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 545 doub 1 n y C8 C9 545 sing 2 n y C8 H8 545 sing 3 n n C7 C12 545 sing 4 n y C7 H7 545 sing 5 n n C12 C11 545 doub 6 n y C12 O13 545 sing 7 n n C11 C10 545 sing 8 n y C11 H11 545 sing 9 n n C10 C9 545 doub 10 n y C10 H10 545 sing 11 n n C9 C14 545 sing 12 n n C14 C15 545 sing 13 n n C14 H141 545 sing 14 n n C14 H142 545 sing 15 n n C15 C17 545 sing 16 n n C15 N16 545 sing 17 n n C15 H15 545 sing 18 n n C17 N19 545 sing 19 n n C17 O18 545 doub 20 n n N19 C20 545 sing 21 n n N19 H19 545 sing 22 n n C20 C21 545 sing 23 n n C20 C6 545 sing 24 n n C20 H20 545 sing 25 n n C21 O23 545 sing 26 n n C21 O22 545 doub 27 n n O23 C24 545 sing 28 n n C24 C25 545 sing 29 n n C24 H241 545 sing 30 n n C24 H242 545 sing 31 n n C25 C26 545 sing 32 n n C25 H251 545 sing 33 n n C25 H252 545 sing 34 n n C26 C27 545 sing 35 n n C26 H261 545 sing 36 n n C26 H262 545 sing 37 n n C27 H271 545 sing 38 n n C27 H272 545 sing 39 n n C27 H273 545 sing 40 n n N16 H161 545 sing 41 n n N16 H162 545 sing 42 n n C6 N5 545 sing 43 n n C6 C1 545 sing 44 n n C6 H6 545 sing 45 n n N5 C4 545 sing 46 n n N5 O28 545 sing 47 n n C4 C3 545 sing 48 n n C4 H41 545 sing 49 n n C4 H42 545 sing 50 n n C3 C2 545 sing 51 n n C3 O32 545 sing 52 n n C3 H3 545 sing 53 n n C2 C1 545 sing 54 n n C2 O29 545 sing 55 n n C2 C30 545 sing 56 n n C1 O64 545 sing 57 n n C1 H1 545 sing 58 n n O28 H28 545 sing 59 n n O32 H32 545 sing 60 n n O29 H29 545 sing 61 n n C30 O31 545 sing 62 n n C30 H301 545 sing 63 n n C30 H302 545 sing 64 n n O31 H31 545 sing 65 n n O64 H64 545 sing 66 n n O13 H13 545 sing 67 n n # _atom_sites.entry_id 1JIK _atom_sites.fract_transf_matrix[1][1] 0.01501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 545 A 1 421 321 545 545 . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 506 506 HOH HOH . C 3 HOH A 7 507 507 HOH HOH . C 3 HOH A 8 508 508 HOH HOH . C 3 HOH A 9 509 509 HOH HOH . C 3 HOH A 10 510 510 HOH HOH . C 3 HOH A 11 511 511 HOH HOH . C 3 HOH A 12 512 512 HOH HOH . C 3 HOH A 13 513 513 HOH HOH . C 3 HOH A 14 514 514 HOH HOH . C 3 HOH A 15 515 515 HOH HOH . C 3 HOH A 16 516 516 HOH HOH . C 3 HOH A 17 517 517 HOH HOH . C 3 HOH A 18 518 518 HOH HOH . C 3 HOH A 19 519 519 HOH HOH . C 3 HOH A 20 520 520 HOH HOH . C 3 HOH A 21 521 521 HOH HOH . C 3 HOH A 22 522 522 HOH HOH . C 3 HOH A 23 523 523 HOH HOH . C 3 HOH A 24 524 524 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 545 . . . B 2 28.648 8.051 82.237 1 11.52 ? C8 545 421 A 1 HETATM 2 C C7 545 . . . B 2 27.372 7.59 82.542 1 10.11 ? C7 545 421 A 1 HETATM 3 C C12 545 . . . B 2 26.735 8.081 83.66 1 13.59 ? C12 545 421 A 1 HETATM 4 C C11 545 . . . B 2 27.247 9.189 84.336 1 14.7 ? C11 545 421 A 1 HETATM 5 C C10 545 . . . B 2 28.425 9.796 83.888 1 14.17 ? C10 545 421 A 1 HETATM 6 C C9 545 . . . B 2 29.136 9.23 82.838 1 11.76 ? C9 545 421 A 1 HETATM 7 C C14 545 . . . B 2 30.444 9.876 82.355 1 12.86 ? C14 545 421 A 1 HETATM 8 C C15 545 . . . B 2 30.52 11.412 82.225 1 15.84 ? C15 545 421 A 1 HETATM 9 C C17 545 . . . B 2 31.992 11.896 82.08 1 18.76 ? C17 545 421 A 1 HETATM 10 N N19 545 . . . B 2 32.8 11.551 83.061 1 24.99 ? N19 545 421 A 1 HETATM 11 C C20 545 . . . B 2 34.17 12.125 83.264 1 27.02 ? C20 545 421 A 1 HETATM 12 C C21 545 . . . B 2 35.197 11.433 82.315 1 28.29 ? C21 545 421 A 1 HETATM 13 O O23 545 . . . B 2 34.951 10.078 82.11 1 26.07 ? O23 545 421 A 1 HETATM 14 C C24 545 . . . B 2 35.858 9.314 81.309 1 20.35 ? C24 545 421 A 1 HETATM 15 C C25 545 . . . B 2 37.349 9.735 81.576 1 19.52 ? C25 545 421 A 1 HETATM 16 C C26 545 . . . B 2 38.372 8.616 81.239 1 18.94 ? C26 545 421 A 1 HETATM 17 C C27 545 . . . B 2 39.166 8.152 82.492 1 18.93 ? C27 545 421 A 1 HETATM 18 O O18 545 . . . B 2 32.372 12.52 81.105 1 26.48 ? O18 545 421 A 1 HETATM 19 N N16 545 . . . B 2 29.636 11.876 81.115 1 11.14 ? N16 545 421 A 1 HETATM 20 O O22 545 . . . B 2 36.133 12.062 81.828 1 34.35 ? O22 545 421 A 1 HETATM 21 C C6 545 . . . B 2 34.642 12.277 84.731 1 31.11 ? C6 545 421 A 1 HETATM 22 N N5 545 . . . B 2 33.467 12.72 85.62 1 34.55 ? N5 545 421 A 1 HETATM 23 C C4 545 . . . B 2 33.766 13.385 86.944 1 30.74 ? C4 545 421 A 1 HETATM 24 C C3 545 . . . B 2 34.89 14.412 86.787 1 35.1 ? C3 545 421 A 1 HETATM 25 C C2 545 . . . B 2 36.129 13.714 86.241 1 38.83 ? C2 545 421 A 1 HETATM 26 C C1 545 . . . B 2 35.824 13.295 84.789 1 37.04 ? C1 545 421 A 1 HETATM 27 O O28 545 . . . B 2 32.491 11.796 85.713 1 36.71 ? O28 545 421 A 1 HETATM 28 O O32 545 . . . B 2 34.518 15.425 85.833 1 34.51 ? O32 545 421 A 1 HETATM 29 O O29 545 . . . B 2 37.127 14.717 86.225 1 41.42 ? O29 545 421 A 1 HETATM 30 C C30 545 . . . B 2 36.695 12.544 87.144 1 41.9 ? C30 545 421 A 1 HETATM 31 O O31 545 . . . B 2 36.74 11.275 86.437 1 41.15 ? O31 545 421 A 1 HETATM 32 O O64 545 . . . B 2 36.966 12.713 84.2 1 45.53 ? O64 545 421 A 1 HETATM 33 O O13 545 . . . B 2 25.638 7.481 84.112 1 13.12 ? O13 545 421 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #