data_1JIO # _model_server_result.job_id l6aoYnzzc4SSlmKwOuhe-Q _model_server_result.datetime_utc '2024-11-08 12:29:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":410}' # _entry.id 1JIO # _exptl.entry_id 1JIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JIO _cell.length_a 54.073 _cell.length_b 78.676 _cell.length_c 98.823 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 350 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 351 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 410 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.195 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 194 n n CHA C4D HEM doub 195 n n CHA HHA HEM sing 196 n n CHB C4A HEM sing 197 n n CHB C1B HEM doub 198 n n CHB HHB HEM sing 199 n n CHC C4B HEM sing 200 n n CHC C1C HEM doub 201 n n CHC HHC HEM sing 202 n n CHD C4C HEM doub 203 n n CHD C1D HEM sing 204 n n CHD HHD HEM sing 205 n n C1A C2A HEM doub 206 n y C1A NA HEM sing 207 n y C2A C3A HEM sing 208 n y C2A CAA HEM sing 209 n n C3A C4A HEM doub 210 n y C3A CMA HEM sing 211 n n C4A NA HEM sing 212 n y CMA HMA HEM sing 213 n n CMA HMAA HEM sing 214 n n CMA HMAB HEM sing 215 n n CAA CBA HEM sing 216 n n CAA HAA HEM sing 217 n n CAA HAAA HEM sing 218 n n CBA CGA HEM sing 219 n n CBA HBA HEM sing 220 n n CBA HBAA HEM sing 221 n n CGA O1A HEM doub 222 n n CGA O2A HEM sing 223 n n C1B C2B HEM sing 224 n n C1B NB HEM sing 225 n n C2B C3B HEM doub 226 n n C2B CMB HEM sing 227 n n C3B C4B HEM sing 228 n n C3B CAB HEM sing 229 n n C4B NB HEM doub 230 n n CMB HMB HEM sing 231 n n CMB HMBA HEM sing 232 n n CMB HMBB HEM sing 233 n n CAB CBB HEM doub 234 n n CAB HAB HEM sing 235 n n CBB HBB HEM sing 236 n n CBB HBBA HEM sing 237 n n C1C C2C HEM sing 238 n y C1C NC HEM sing 239 n y C2C C3C HEM doub 240 n y C2C CMC HEM sing 241 n n C3C C4C HEM sing 242 n y C3C CAC HEM sing 243 n n C4C NC HEM sing 244 n y CMC HMC HEM sing 245 n n CMC HMCA HEM sing 246 n n CMC HMCB HEM sing 247 n n CAC CBC HEM doub 248 n n CAC HAC HEM sing 249 n n CBC HBC HEM sing 250 n n CBC HBCA HEM sing 251 n n C1D C2D HEM sing 252 n n C1D ND HEM doub 253 n n C2D C3D HEM doub 254 n n C2D CMD HEM sing 255 n n C3D C4D HEM sing 256 n n C3D CAD HEM sing 257 n n C4D ND HEM sing 258 n n CMD HMD HEM sing 259 n n CMD HMDA HEM sing 260 n n CMD HMDB HEM sing 261 n n CAD CBD HEM sing 262 n n CAD HAD HEM sing 263 n n CAD HADA HEM sing 264 n n CBD CGD HEM sing 265 n n CBD HBD HEM sing 266 n n CBD HBDA HEM sing 267 n n CGD O1D HEM doub 268 n n CGD O2D HEM sing 269 n n O2A H2A HEM sing 270 n n O2D H2D HEM sing 271 n n FE NA HEM sing 272 n n FE NB HEM sing 273 n n FE NC HEM sing 274 n n FE ND HEM sing 275 n n # _atom_sites.entry_id 1JIO _atom_sites.fract_transf_matrix[1][1] 0.018494 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 410 410 HEM HEM . C 3 DEB A 1 420 420 DEB DEB . D 4 HOH A 1 421 1 HOH TIP . D 4 HOH A 2 422 2 HOH TIP . D 4 HOH A 3 423 3 HOH TIP . D 4 HOH A 4 424 4 HOH TIP . D 4 HOH A 5 425 5 HOH TIP . D 4 HOH A 6 426 6 HOH TIP . D 4 HOH A 7 427 7 HOH TIP . D 4 HOH A 8 428 8 HOH TIP . D 4 HOH A 9 429 9 HOH TIP . D 4 HOH A 10 430 10 HOH TIP . D 4 HOH A 11 431 11 HOH TIP . D 4 HOH A 12 432 12 HOH TIP . D 4 HOH A 13 433 13 HOH TIP . D 4 HOH A 14 434 14 HOH TIP . D 4 HOH A 15 435 15 HOH TIP . D 4 HOH A 16 436 16 HOH TIP . D 4 HOH A 17 437 17 HOH TIP . D 4 HOH A 18 438 18 HOH TIP . D 4 HOH A 19 439 19 HOH TIP . D 4 HOH A 20 440 20 HOH TIP . D 4 HOH A 21 441 21 HOH TIP . D 4 HOH A 22 442 22 HOH TIP . D 4 HOH A 23 443 23 HOH TIP . D 4 HOH A 24 444 24 HOH TIP . D 4 HOH A 25 445 25 HOH TIP . D 4 HOH A 26 446 26 HOH TIP . D 4 HOH A 27 447 27 HOH TIP . D 4 HOH A 28 448 28 HOH TIP . D 4 HOH A 29 449 29 HOH TIP . D 4 HOH A 30 450 30 HOH TIP . D 4 HOH A 31 451 31 HOH TIP . D 4 HOH A 32 452 32 HOH TIP . D 4 HOH A 33 453 33 HOH TIP . D 4 HOH A 34 454 34 HOH TIP . D 4 HOH A 35 455 35 HOH TIP . D 4 HOH A 36 456 36 HOH TIP . D 4 HOH A 37 457 37 HOH TIP . D 4 HOH A 38 458 38 HOH TIP . D 4 HOH A 39 459 39 HOH TIP . D 4 HOH A 40 460 40 HOH TIP . D 4 HOH A 41 461 41 HOH TIP . D 4 HOH A 42 462 42 HOH TIP . D 4 HOH A 43 463 43 HOH TIP . D 4 HOH A 44 464 44 HOH TIP . D 4 HOH A 45 465 45 HOH TIP . D 4 HOH A 46 466 46 HOH TIP . D 4 HOH A 47 467 47 HOH TIP . D 4 HOH A 48 468 48 HOH TIP . D 4 HOH A 49 469 49 HOH TIP . D 4 HOH A 50 470 50 HOH TIP . D 4 HOH A 51 471 51 HOH TIP . D 4 HOH A 52 472 52 HOH TIP . D 4 HOH A 53 473 53 HOH TIP . D 4 HOH A 54 474 54 HOH TIP . D 4 HOH A 55 475 55 HOH TIP . D 4 HOH A 56 476 56 HOH TIP . D 4 HOH A 57 477 57 HOH TIP . D 4 HOH A 58 478 58 HOH TIP . D 4 HOH A 59 479 59 HOH TIP . D 4 HOH A 60 480 60 HOH TIP . D 4 HOH A 61 481 61 HOH TIP . D 4 HOH A 62 482 62 HOH TIP . D 4 HOH A 63 483 63 HOH TIP . D 4 HOH A 64 484 64 HOH TIP . D 4 HOH A 65 485 65 HOH TIP . D 4 HOH A 66 486 66 HOH TIP . D 4 HOH A 67 487 67 HOH TIP . D 4 HOH A 68 488 68 HOH TIP . D 4 HOH A 69 489 69 HOH TIP . D 4 HOH A 70 490 70 HOH TIP . D 4 HOH A 71 491 71 HOH TIP . D 4 HOH A 72 492 72 HOH TIP . D 4 HOH A 73 493 73 HOH TIP . D 4 HOH A 74 494 74 HOH TIP . D 4 HOH A 75 495 75 HOH TIP . D 4 HOH A 76 496 76 HOH TIP . D 4 HOH A 77 497 77 HOH TIP . D 4 HOH A 78 498 78 HOH TIP . D 4 HOH A 79 499 79 HOH TIP . D 4 HOH A 80 500 80 HOH TIP . D 4 HOH A 81 501 81 HOH TIP . D 4 HOH A 82 502 82 HOH TIP . D 4 HOH A 83 503 83 HOH TIP . D 4 HOH A 84 504 84 HOH TIP . D 4 HOH A 85 505 85 HOH TIP . D 4 HOH A 86 506 86 HOH TIP . D 4 HOH A 87 507 87 HOH TIP . D 4 HOH A 88 508 88 HOH TIP . D 4 HOH A 89 509 89 HOH TIP . D 4 HOH A 90 510 90 HOH TIP . D 4 HOH A 91 511 91 HOH TIP . D 4 HOH A 92 512 92 HOH TIP . D 4 HOH A 93 513 93 HOH TIP . D 4 HOH A 94 514 94 HOH TIP . D 4 HOH A 95 515 95 HOH TIP . D 4 HOH A 96 516 96 HOH TIP . D 4 HOH A 97 517 97 HOH TIP . D 4 HOH A 98 518 98 HOH TIP . D 4 HOH A 99 519 99 HOH TIP . D 4 HOH A 100 520 100 HOH TIP . D 4 HOH A 101 521 101 HOH TIP . D 4 HOH A 102 522 102 HOH TIP . D 4 HOH A 103 523 103 HOH TIP . D 4 HOH A 104 524 104 HOH TIP . D 4 HOH A 105 525 105 HOH TIP . D 4 HOH A 106 526 106 HOH TIP . D 4 HOH A 107 527 107 HOH TIP . D 4 HOH A 108 528 108 HOH TIP . D 4 HOH A 109 529 109 HOH TIP . D 4 HOH A 110 530 110 HOH TIP . D 4 HOH A 111 531 111 HOH TIP . D 4 HOH A 112 532 112 HOH TIP . D 4 HOH A 113 533 113 HOH TIP . D 4 HOH A 114 534 114 HOH TIP . D 4 HOH A 115 535 115 HOH TIP . D 4 HOH A 116 536 116 HOH TIP . D 4 HOH A 117 537 117 HOH TIP . D 4 HOH A 118 538 118 HOH TIP . D 4 HOH A 119 539 119 HOH TIP . D 4 HOH A 120 540 120 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -10.602 13.629 9.6 1 25.03 ? CHA HEM 410 A 1 HETATM 2 C CHB HEM . . . B 2 -9.007 9.629 7.463 1 17 ? CHB HEM 410 A 1 HETATM 3 C CHC HEM . . . B 2 -4.999 9.762 10.211 1 20.56 ? CHC HEM 410 A 1 HETATM 4 C CHD HEM . . . B 2 -6.824 13.537 12.604 1 23.26 ? CHD HEM 410 A 1 HETATM 5 C C1A HEM . . . B 2 -10.52 12.543 8.764 1 23.29 ? C1A HEM 410 A 1 HETATM 6 C C2A HEM . . . B 2 -11.528 12.185 7.777 1 20.3 ? C2A HEM 410 A 1 HETATM 7 C C3A HEM . . . B 2 -11.06 11.047 7.2 1 21 ? C3A HEM 410 A 1 HETATM 8 C C4A HEM . . . B 2 -9.782 10.735 7.783 1 18.07 ? C4A HEM 410 A 1 HETATM 9 C CMA HEM . . . B 2 -11.779 10.183 6.17 1 25.23 ? CMA HEM 410 A 1 HETATM 10 C CAA HEM . . . B 2 -12.859 12.933 7.512 1 20.78 ? CAA HEM 410 A 1 HETATM 11 C CBA HEM . . . B 2 -14.061 12.313 8.248 1 27.83 ? CBA HEM 410 A 1 HETATM 12 C CGA HEM . . . B 2 -15.36 13.069 8.003 1 29.48 ? CGA HEM 410 A 1 HETATM 13 O O1A HEM . . . B 2 -15.463 13.733 6.948 1 20.51 ? O1A HEM 410 A 1 HETATM 14 O O2A HEM . . . B 2 -16.281 12.988 8.85 1 24.18 ? O2A HEM 410 A 1 HETATM 15 C C1B HEM . . . B 2 -7.75 9.334 7.997 1 15.48 ? C1B HEM 410 A 1 HETATM 16 C C2B HEM . . . B 2 -6.894 8.284 7.524 1 22.47 ? C2B HEM 410 A 1 HETATM 17 C C3B HEM . . . B 2 -5.723 8.329 8.266 1 22.15 ? C3B HEM 410 A 1 HETATM 18 C C4B HEM . . . B 2 -5.921 9.406 9.218 1 23.19 ? C4B HEM 410 A 1 HETATM 19 C CMB HEM . . . B 2 -7.281 7.365 6.382 1 18.85 ? CMB HEM 410 A 1 HETATM 20 C CAB HEM . . . B 2 -4.532 7.567 8.238 1 26.16 ? CAB HEM 410 A 1 HETATM 21 C CBB HEM . . . B 2 -4.061 6.597 7.286 1 31.44 ? CBB HEM 410 A 1 HETATM 22 C C1C HEM . . . B 2 -5.123 10.871 11.062 1 23.56 ? C1C HEM 410 A 1 HETATM 23 C C2C HEM . . . B 2 -4.153 11.242 12.075 1 27.04 ? C2C HEM 410 A 1 HETATM 24 C C3C HEM . . . B 2 -4.681 12.255 12.797 1 24.6 ? C3C HEM 410 A 1 HETATM 25 C C4C HEM . . . B 2 -5.962 12.534 12.172 1 29.14 ? C4C HEM 410 A 1 HETATM 26 C CMC HEM . . . B 2 -2.734 10.69 12.196 1 23.16 ? CMC HEM 410 A 1 HETATM 27 C CAC HEM . . . B 2 -4.216 12.889 13.953 1 25.9 ? CAC HEM 410 A 1 HETATM 28 C CBC HEM . . . B 2 -2.903 12.889 14.528 1 28.89 ? CBC HEM 410 A 1 HETATM 29 C C1D HEM . . . B 2 -8.009 13.888 11.982 1 24.88 ? C1D HEM 410 A 1 HETATM 30 C C2D HEM . . . B 2 -8.879 14.945 12.455 1 25.42 ? C2D HEM 410 A 1 HETATM 31 C C3D HEM . . . B 2 -9.91 15.004 11.597 1 26.75 ? C3D HEM 410 A 1 HETATM 32 C C4D HEM . . . B 2 -9.666 13.99 10.565 1 22.17 ? C4D HEM 410 A 1 HETATM 33 C CMD HEM . . . B 2 -8.693 15.799 13.705 1 21.07 ? CMD HEM 410 A 1 HETATM 34 C CAD HEM . . . B 2 -11.093 15.954 11.729 1 24.26 ? CAD HEM 410 A 1 HETATM 35 C CBD HEM . . . B 2 -10.966 17.075 10.708 1 27.84 ? CBD HEM 410 A 1 HETATM 36 C CGD HEM . . . B 2 -12.123 18.048 10.752 1 29.62 ? CGD HEM 410 A 1 HETATM 37 O O1D HEM . . . B 2 -13.252 17.632 11.085 1 21.66 ? O1D HEM 410 A 1 HETATM 38 O O2D HEM . . . B 2 -11.905 19.232 10.438 1 29.17 ? O2D HEM 410 A 1 HETATM 39 N NA HEM . . . B 2 -9.424 11.667 8.731 1 27.37 ? NA HEM 410 A 1 HETATM 40 N NB HEM . . . B 2 -7.127 10.068 8.988 1 26 ? NB HEM 410 A 1 HETATM 41 N NC HEM . . . B 2 -6.196 11.724 11.074 1 27.79 ? NC HEM 410 A 1 HETATM 42 N ND HEM . . . B 2 -8.495 13.297 10.818 1 28.8 ? ND HEM 410 A 1 HETATM 43 FE FE HEM . . . B 2 -7.678 11.826 9.723 1 26.13 ? FE HEM 410 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #