data_1JIO
#
_model_server_result.job_id            NBWDFqOciykNOoEpHsNjhQ 
_model_server_result.datetime_utc      '2024-11-08 13:06:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jio 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":420}' 
#
_entry.id    1JIO 
#
_exptl.entry_id    1JIO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              386.523 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '6-DEOXYERYTHRONOLIDE B' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1JIO 
_cell.length_a            54.073 
_cell.length_b            78.676 
_cell.length_c            98.823 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JIO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             350 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              351 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            FE 
_struct_conn.ptnr2_label_comp_id            HEM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             HEM 
_struct_conn.ptnr2_auth_seq_id              410 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.195 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H38 O6' 
_chem_comp.formula_weight    386.523 
_chem_comp.id                DEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '6-DEOXYERYTHRONOLIDE B' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DEB sing 83 n n 
C1 O16 DEB sing 84 n n 
C1 O17 DEB doub 85 n n 
C2 C3 DEB sing 86 n n 
C2 C18 DEB sing 87 n n 
C2 H2 DEB sing 88 n n 
C3 C4 DEB sing 89 n n 
C3 O19 DEB sing 90 n n 
C3 H3 DEB sing 91 n n 
C4 C5 DEB sing 92 n n 
C4 C20 DEB sing 93 n n 
C4 H4 DEB sing 94 n n 
C5 C6 DEB sing 95 n n 
C5 O21 DEB sing 96 n n 
C5 H5 DEB sing 97 n n 
C6 C7 DEB sing 98 n n 
C6 C22 DEB sing 99 n n 
C6 H6 DEB sing 100 n n 
C7 C8 DEB sing 101 n n 
C7 H71 DEB sing 102 n n 
C7 H72 DEB sing 103 n n 
C8 C9 DEB sing 104 n n 
C8 C23 DEB sing 105 n n 
C8 H8 DEB sing 106 n n 
C9 C10 DEB sing 107 n n 
C9 O24 DEB doub 108 n n 
C10 C11 DEB sing 109 n n 
C10 C25 DEB sing 110 n n 
C10 H10 DEB sing 111 n n 
C11 C12 DEB sing 112 n n 
C11 O26 DEB sing 113 n n 
C11 H11 DEB sing 114 n n 
C12 C13 DEB sing 115 n n 
C12 C27 DEB sing 116 n n 
C12 H12 DEB sing 117 n n 
C13 C14 DEB sing 118 n n 
C13 O16 DEB sing 119 n n 
C13 H13 DEB sing 120 n n 
C14 C15 DEB sing 121 n n 
C14 H141 DEB sing 122 n n 
C14 H142 DEB sing 123 n n 
C15 H151 DEB sing 124 n n 
C15 H152 DEB sing 125 n n 
C15 H153 DEB sing 126 n n 
C18 H181 DEB sing 127 n n 
C18 H182 DEB sing 128 n n 
C18 H183 DEB sing 129 n n 
O19 HO9 DEB sing 130 n n 
C20 H201 DEB sing 131 n n 
C20 H202 DEB sing 132 n n 
C20 H203 DEB sing 133 n n 
O21 HO1 DEB sing 134 n n 
C22 H221 DEB sing 135 n n 
C22 H222 DEB sing 136 n n 
C22 H223 DEB sing 137 n n 
C23 H231 DEB sing 138 n n 
C23 H232 DEB sing 139 n n 
C23 H233 DEB sing 140 n n 
C25 H251 DEB sing 141 n n 
C25 H252 DEB sing 142 n n 
C25 H253 DEB sing 143 n n 
O26 HO6 DEB sing 144 n n 
C27 H271 DEB sing 145 n n 
C27 H272 DEB sing 146 n n 
C27 H273 DEB sing 147 n n 
#
_atom_sites.entry_id                     1JIO 
_atom_sites.fract_transf_matrix[1][1]    0.018494 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01271 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010119 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 410 410 HEM HEM . 
C 3 DEB A 1 420 420 DEB DEB . 
D 4 HOH A 1 421 1 HOH TIP . 
D 4 HOH A 2 422 2 HOH TIP . 
D 4 HOH A 3 423 3 HOH TIP . 
D 4 HOH A 4 424 4 HOH TIP . 
D 4 HOH A 5 425 5 HOH TIP . 
D 4 HOH A 6 426 6 HOH TIP . 
D 4 HOH A 7 427 7 HOH TIP . 
D 4 HOH A 8 428 8 HOH TIP . 
D 4 HOH A 9 429 9 HOH TIP . 
D 4 HOH A 10 430 10 HOH TIP . 
D 4 HOH A 11 431 11 HOH TIP . 
D 4 HOH A 12 432 12 HOH TIP . 
D 4 HOH A 13 433 13 HOH TIP . 
D 4 HOH A 14 434 14 HOH TIP . 
D 4 HOH A 15 435 15 HOH TIP . 
D 4 HOH A 16 436 16 HOH TIP . 
D 4 HOH A 17 437 17 HOH TIP . 
D 4 HOH A 18 438 18 HOH TIP . 
D 4 HOH A 19 439 19 HOH TIP . 
D 4 HOH A 20 440 20 HOH TIP . 
D 4 HOH A 21 441 21 HOH TIP . 
D 4 HOH A 22 442 22 HOH TIP . 
D 4 HOH A 23 443 23 HOH TIP . 
D 4 HOH A 24 444 24 HOH TIP . 
D 4 HOH A 25 445 25 HOH TIP . 
D 4 HOH A 26 446 26 HOH TIP . 
D 4 HOH A 27 447 27 HOH TIP . 
D 4 HOH A 28 448 28 HOH TIP . 
D 4 HOH A 29 449 29 HOH TIP . 
D 4 HOH A 30 450 30 HOH TIP . 
D 4 HOH A 31 451 31 HOH TIP . 
D 4 HOH A 32 452 32 HOH TIP . 
D 4 HOH A 33 453 33 HOH TIP . 
D 4 HOH A 34 454 34 HOH TIP . 
D 4 HOH A 35 455 35 HOH TIP . 
D 4 HOH A 36 456 36 HOH TIP . 
D 4 HOH A 37 457 37 HOH TIP . 
D 4 HOH A 38 458 38 HOH TIP . 
D 4 HOH A 39 459 39 HOH TIP . 
D 4 HOH A 40 460 40 HOH TIP . 
D 4 HOH A 41 461 41 HOH TIP . 
D 4 HOH A 42 462 42 HOH TIP . 
D 4 HOH A 43 463 43 HOH TIP . 
D 4 HOH A 44 464 44 HOH TIP . 
D 4 HOH A 45 465 45 HOH TIP . 
D 4 HOH A 46 466 46 HOH TIP . 
D 4 HOH A 47 467 47 HOH TIP . 
D 4 HOH A 48 468 48 HOH TIP . 
D 4 HOH A 49 469 49 HOH TIP . 
D 4 HOH A 50 470 50 HOH TIP . 
D 4 HOH A 51 471 51 HOH TIP . 
D 4 HOH A 52 472 52 HOH TIP . 
D 4 HOH A 53 473 53 HOH TIP . 
D 4 HOH A 54 474 54 HOH TIP . 
D 4 HOH A 55 475 55 HOH TIP . 
D 4 HOH A 56 476 56 HOH TIP . 
D 4 HOH A 57 477 57 HOH TIP . 
D 4 HOH A 58 478 58 HOH TIP . 
D 4 HOH A 59 479 59 HOH TIP . 
D 4 HOH A 60 480 60 HOH TIP . 
D 4 HOH A 61 481 61 HOH TIP . 
D 4 HOH A 62 482 62 HOH TIP . 
D 4 HOH A 63 483 63 HOH TIP . 
D 4 HOH A 64 484 64 HOH TIP . 
D 4 HOH A 65 485 65 HOH TIP . 
D 4 HOH A 66 486 66 HOH TIP . 
D 4 HOH A 67 487 67 HOH TIP . 
D 4 HOH A 68 488 68 HOH TIP . 
D 4 HOH A 69 489 69 HOH TIP . 
D 4 HOH A 70 490 70 HOH TIP . 
D 4 HOH A 71 491 71 HOH TIP . 
D 4 HOH A 72 492 72 HOH TIP . 
D 4 HOH A 73 493 73 HOH TIP . 
D 4 HOH A 74 494 74 HOH TIP . 
D 4 HOH A 75 495 75 HOH TIP . 
D 4 HOH A 76 496 76 HOH TIP . 
D 4 HOH A 77 497 77 HOH TIP . 
D 4 HOH A 78 498 78 HOH TIP . 
D 4 HOH A 79 499 79 HOH TIP . 
D 4 HOH A 80 500 80 HOH TIP . 
D 4 HOH A 81 501 81 HOH TIP . 
D 4 HOH A 82 502 82 HOH TIP . 
D 4 HOH A 83 503 83 HOH TIP . 
D 4 HOH A 84 504 84 HOH TIP . 
D 4 HOH A 85 505 85 HOH TIP . 
D 4 HOH A 86 506 86 HOH TIP . 
D 4 HOH A 87 507 87 HOH TIP . 
D 4 HOH A 88 508 88 HOH TIP . 
D 4 HOH A 89 509 89 HOH TIP . 
D 4 HOH A 90 510 90 HOH TIP . 
D 4 HOH A 91 511 91 HOH TIP . 
D 4 HOH A 92 512 92 HOH TIP . 
D 4 HOH A 93 513 93 HOH TIP . 
D 4 HOH A 94 514 94 HOH TIP . 
D 4 HOH A 95 515 95 HOH TIP . 
D 4 HOH A 96 516 96 HOH TIP . 
D 4 HOH A 97 517 97 HOH TIP . 
D 4 HOH A 98 518 98 HOH TIP . 
D 4 HOH A 99 519 99 HOH TIP . 
D 4 HOH A 100 520 100 HOH TIP . 
D 4 HOH A 101 521 101 HOH TIP . 
D 4 HOH A 102 522 102 HOH TIP . 
D 4 HOH A 103 523 103 HOH TIP . 
D 4 HOH A 104 524 104 HOH TIP . 
D 4 HOH A 105 525 105 HOH TIP . 
D 4 HOH A 106 526 106 HOH TIP . 
D 4 HOH A 107 527 107 HOH TIP . 
D 4 HOH A 108 528 108 HOH TIP . 
D 4 HOH A 109 529 109 HOH TIP . 
D 4 HOH A 110 530 110 HOH TIP . 
D 4 HOH A 111 531 111 HOH TIP . 
D 4 HOH A 112 532 112 HOH TIP . 
D 4 HOH A 113 533 113 HOH TIP . 
D 4 HOH A 114 534 114 HOH TIP . 
D 4 HOH A 115 535 115 HOH TIP . 
D 4 HOH A 116 536 116 HOH TIP . 
D 4 HOH A 117 537 117 HOH TIP . 
D 4 HOH A 118 538 118 HOH TIP . 
D 4 HOH A 119 539 119 HOH TIP . 
D 4 HOH A 120 540 120 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DEB . . . C 3 -12.926 7.095 16.061 1 31.86 ? C1 DEB 420 A 1 
HETATM 2 C C2 DEB . . . C 3 -12.094 6.021 15.381 1 34.64 ? C2 DEB 420 A 1 
HETATM 3 C C3 DEB . . . C 3 -11.229 6.64 14.304 1 37.74 ? C3 DEB 420 A 1 
HETATM 4 C C4 DEB . . . C 3 -12.009 7.475 13.238 1 34.37 ? C4 DEB 420 A 1 
HETATM 5 C C5 DEB . . . C 3 -10.986 8.38 12.466 1 37.48 ? C5 DEB 420 A 1 
HETATM 6 C C6 DEB . . . C 3 -11.349 9.426 11.375 1 35.85 ? C6 DEB 420 A 1 
HETATM 7 C C7 DEB . . . C 3 -12.446 10.349 11.945 1 37.28 ? C7 DEB 420 A 1 
HETATM 8 C C8 DEB . . . C 3 -12.139 11.085 13.282 1 39.28 ? C8 DEB 420 A 1 
HETATM 9 C C9 DEB . . . C 3 -13.34 11.94 13.725 1 36.58 ? C9 DEB 420 A 1 
HETATM 10 C C10 DEB . . . C 3 -14.683 11.207 13.942 1 36.73 ? C10 DEB 420 A 1 
HETATM 11 C C11 DEB . . . C 3 -14.456 10.036 14.989 1 32.79 ? C11 DEB 420 A 1 
HETATM 12 C C12 DEB . . . C 3 -15.617 9.097 15.4 1 32.26 ? C12 DEB 420 A 1 
HETATM 13 C C13 DEB . . . C 3 -15.226 8.003 16.446 1 31.19 ? C13 DEB 420 A 1 
HETATM 14 C C14 DEB . . . C 3 -16.463 7.197 16.916 1 32.58 ? C14 DEB 420 A 1 
HETATM 15 C C15 DEB . . . C 3 -16.154 6.11 17.941 1 20.99 ? C15 DEB 420 A 1 
HETATM 16 O O16 DEB . . . C 3 -14.293 7.073 15.88 1 30.42 ? O16 DEB 420 A 1 
HETATM 17 O O17 DEB . . . C 3 -12.417 7.987 16.76 1 31.8 ? O17 DEB 420 A 1 
HETATM 18 C C18 DEB . . . C 3 -11.242 5.273 16.383 1 33.14 ? C18 DEB 420 A 1 
HETATM 19 O O19 DEB . . . C 3 -10.469 5.589 13.667 1 41.54 ? O19 DEB 420 A 1 
HETATM 20 C C20 DEB . . . C 3 -12.809 6.536 12.313 1 31.67 ? C20 DEB 420 A 1 
HETATM 21 O O21 DEB . . . C 3 -9.953 7.54 11.911 1 42.64 ? O21 DEB 420 A 1 
HETATM 22 C C22 DEB . . . C 3 -11.848 8.794 10.07 1 34.69 ? C22 DEB 420 A 1 
HETATM 23 C C23 DEB . . . C 3 -10.903 11.957 13.146 1 37.37 ? C23 DEB 420 A 1 
HETATM 24 O O24 DEB . . . C 3 -13.223 13.149 13.912 1 32.37 ? O24 DEB 420 A 1 
HETATM 25 C C25 DEB . . . C 3 -15.763 12.196 14.408 1 27.47 ? C25 DEB 420 A 1 
HETATM 26 O O26 DEB . . . C 3 -13.882 10.604 16.193 1 30.74 ? O26 DEB 420 A 1 
HETATM 27 C C27 DEB . . . C 3 -16.232 8.453 14.135 1 35.4 ? C27 DEB 420 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#