data_1JIP # _model_server_result.job_id SKXS2_skdQLFfaEcL57vZg _model_server_result.datetime_utc '2024-10-20 00:32:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":410}' # _entry.id 1JIP # _exptl.entry_id 1JIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JIP _cell.length_a 54.23 _cell.length_b 80.49 _cell.length_c 99.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 350 A CYS 351 1_555 B FE HEM . A HEM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 B FE HEM . A HEM 410 1_555 C N2 KTN . A KTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1JIP _atom_sites.fract_transf_matrix[1][1] 0.01844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 410 410 HEM HEM . C 3 KTN A 1 801 801 KTN KET . D 4 HOH A 1 802 1 HOH TIP . D 4 HOH A 2 803 2 HOH TIP . D 4 HOH A 3 804 3 HOH TIP . D 4 HOH A 4 805 4 HOH TIP . D 4 HOH A 5 806 5 HOH TIP . D 4 HOH A 6 807 6 HOH TIP . D 4 HOH A 7 808 7 HOH TIP . D 4 HOH A 8 809 8 HOH TIP . D 4 HOH A 9 810 9 HOH TIP . D 4 HOH A 10 811 10 HOH TIP . D 4 HOH A 11 812 11 HOH TIP . D 4 HOH A 12 813 12 HOH TIP . D 4 HOH A 13 814 13 HOH TIP . D 4 HOH A 14 815 14 HOH TIP . D 4 HOH A 15 816 15 HOH TIP . D 4 HOH A 16 817 16 HOH TIP . D 4 HOH A 17 818 17 HOH TIP . D 4 HOH A 18 819 18 HOH TIP . D 4 HOH A 19 820 19 HOH TIP . D 4 HOH A 20 821 20 HOH TIP . D 4 HOH A 21 822 21 HOH TIP . D 4 HOH A 22 823 22 HOH TIP . D 4 HOH A 23 824 23 HOH TIP . D 4 HOH A 24 825 24 HOH TIP . D 4 HOH A 25 826 25 HOH TIP . D 4 HOH A 26 827 26 HOH TIP . D 4 HOH A 27 828 27 HOH TIP . D 4 HOH A 28 829 28 HOH TIP . D 4 HOH A 29 830 29 HOH TIP . D 4 HOH A 30 831 30 HOH TIP . D 4 HOH A 31 832 31 HOH TIP . D 4 HOH A 32 833 32 HOH TIP . D 4 HOH A 33 834 33 HOH TIP . D 4 HOH A 34 835 34 HOH TIP . D 4 HOH A 35 836 35 HOH TIP . D 4 HOH A 36 837 36 HOH TIP . D 4 HOH A 37 838 37 HOH TIP . D 4 HOH A 38 839 38 HOH TIP . D 4 HOH A 39 840 39 HOH TIP . D 4 HOH A 40 841 40 HOH TIP . D 4 HOH A 41 842 41 HOH TIP . D 4 HOH A 42 843 42 HOH TIP . D 4 HOH A 43 844 43 HOH TIP . D 4 HOH A 44 845 44 HOH TIP . D 4 HOH A 45 846 45 HOH TIP . D 4 HOH A 46 847 46 HOH TIP . D 4 HOH A 47 848 47 HOH TIP . D 4 HOH A 48 849 48 HOH TIP . D 4 HOH A 49 850 49 HOH TIP . D 4 HOH A 50 851 50 HOH TIP . D 4 HOH A 51 852 51 HOH TIP . D 4 HOH A 52 853 52 HOH TIP . D 4 HOH A 53 854 53 HOH TIP . D 4 HOH A 54 855 54 HOH TIP . D 4 HOH A 55 856 55 HOH TIP . D 4 HOH A 56 857 56 HOH TIP . D 4 HOH A 57 858 57 HOH TIP . D 4 HOH A 58 859 58 HOH TIP . D 4 HOH A 59 860 59 HOH TIP . D 4 HOH A 60 861 60 HOH TIP . D 4 HOH A 61 862 61 HOH TIP . D 4 HOH A 62 863 62 HOH TIP . D 4 HOH A 63 864 63 HOH TIP . D 4 HOH A 64 865 64 HOH TIP . D 4 HOH A 65 866 65 HOH TIP . D 4 HOH A 66 867 66 HOH TIP . D 4 HOH A 67 868 67 HOH TIP . D 4 HOH A 68 869 68 HOH TIP . D 4 HOH A 69 870 69 HOH TIP . D 4 HOH A 70 871 70 HOH TIP . D 4 HOH A 71 872 71 HOH TIP . D 4 HOH A 72 873 72 HOH TIP . D 4 HOH A 73 874 73 HOH TIP . D 4 HOH A 74 875 74 HOH TIP . D 4 HOH A 75 876 75 HOH TIP . D 4 HOH A 76 877 76 HOH TIP . D 4 HOH A 77 878 77 HOH TIP . D 4 HOH A 78 879 78 HOH TIP . D 4 HOH A 79 880 79 HOH TIP . D 4 HOH A 80 881 80 HOH TIP . D 4 HOH A 81 882 81 HOH TIP . D 4 HOH A 82 883 82 HOH TIP . D 4 HOH A 83 884 83 HOH TIP . D 4 HOH A 84 885 84 HOH TIP . D 4 HOH A 85 886 85 HOH TIP . D 4 HOH A 86 887 86 HOH TIP . D 4 HOH A 87 888 87 HOH TIP . D 4 HOH A 88 889 88 HOH TIP . D 4 HOH A 89 890 89 HOH TIP . D 4 HOH A 90 891 90 HOH TIP . D 4 HOH A 91 892 91 HOH TIP . D 4 HOH A 92 893 92 HOH TIP . D 4 HOH A 93 894 93 HOH TIP . D 4 HOH A 94 895 94 HOH TIP . D 4 HOH A 95 896 95 HOH TIP . D 4 HOH A 96 897 96 HOH TIP . D 4 HOH A 97 898 97 HOH TIP . D 4 HOH A 98 899 98 HOH TIP . D 4 HOH A 99 900 99 HOH TIP . D 4 HOH A 100 901 100 HOH TIP . D 4 HOH A 101 902 101 HOH TIP . D 4 HOH A 102 903 102 HOH TIP . D 4 HOH A 103 904 103 HOH TIP . D 4 HOH A 104 905 104 HOH TIP . D 4 HOH A 105 906 105 HOH TIP . D 4 HOH A 106 907 106 HOH TIP . D 4 HOH A 107 908 107 HOH TIP . D 4 HOH A 108 909 108 HOH TIP . D 4 HOH A 109 910 109 HOH TIP . D 4 HOH A 110 911 110 HOH TIP . D 4 HOH A 111 912 111 HOH TIP . D 4 HOH A 112 913 112 HOH TIP . D 4 HOH A 113 914 113 HOH TIP . D 4 HOH A 114 915 114 HOH TIP . D 4 HOH A 115 916 115 HOH TIP . D 4 HOH A 116 917 116 HOH TIP . D 4 HOH A 117 918 117 HOH TIP . D 4 HOH A 118 919 118 HOH TIP . D 4 HOH A 119 920 119 HOH TIP . D 4 HOH A 120 921 120 HOH TIP . D 4 HOH A 121 922 121 HOH TIP . D 4 HOH A 122 923 122 HOH TIP . D 4 HOH A 123 924 123 HOH TIP . D 4 HOH A 124 925 124 HOH TIP . D 4 HOH A 125 926 125 HOH TIP . D 4 HOH A 126 927 126 HOH TIP . D 4 HOH A 127 928 127 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -10.882 14.181 9.938 1 15.91 ? CHA HEM 410 A 1 HETATM 2 C CHB HEM . . . B 2 -9.202 10.193 7.694 1 19.93 ? CHB HEM 410 A 1 HETATM 3 C CHC HEM . . . B 2 -5.167 10.405 10.445 1 16.14 ? CHC HEM 410 A 1 HETATM 4 C CHD HEM . . . B 2 -7.076 14.093 12.908 1 15.25 ? CHD HEM 410 A 1 HETATM 5 C C1A HEM . . . B 2 -10.761 13.079 9.082 1 18.33 ? C1A HEM 410 A 1 HETATM 6 C C2A HEM . . . B 2 -11.745 12.721 8.084 1 17.85 ? C2A HEM 410 A 1 HETATM 7 C C3A HEM . . . B 2 -11.288 11.583 7.482 1 14.91 ? C3A HEM 410 A 1 HETATM 8 C C4A HEM . . . B 2 -10.035 11.248 8.101 1 15.55 ? C4A HEM 410 A 1 HETATM 9 C CMA HEM . . . B 2 -11.925 10.795 6.346 1 17.86 ? CMA HEM 410 A 1 HETATM 10 C CAA HEM . . . B 2 -12.955 13.585 7.743 1 23.18 ? CAA HEM 410 A 1 HETATM 11 C CBA HEM . . . B 2 -14.182 13.049 8.452 1 24.36 ? CBA HEM 410 A 1 HETATM 12 C CGA HEM . . . B 2 -15.455 13.82 8.122 1 27.73 ? CGA HEM 410 A 1 HETATM 13 O O1A HEM . . . B 2 -15.525 14.476 7.058 1 23.67 ? O1A HEM 410 A 1 HETATM 14 O O2A HEM . . . B 2 -16.4 13.75 8.929 1 25.47 ? O2A HEM 410 A 1 HETATM 15 C C1B HEM . . . B 2 -7.924 9.923 8.207 1 17.37 ? C1B HEM 410 A 1 HETATM 16 C C2B HEM . . . B 2 -7.053 8.852 7.764 1 20.75 ? C2B HEM 410 A 1 HETATM 17 C C3B HEM . . . B 2 -5.92 8.894 8.562 1 18.36 ? C3B HEM 410 A 1 HETATM 18 C C4B HEM . . . B 2 -6.081 10.014 9.455 1 18.61 ? C4B HEM 410 A 1 HETATM 19 C CMB HEM . . . B 2 -7.367 7.868 6.629 1 16.32 ? CMB HEM 410 A 1 HETATM 20 C CAB HEM . . . B 2 -4.784 8.055 8.553 1 17.55 ? CAB HEM 410 A 1 HETATM 21 C CBB HEM . . . B 2 -4.628 6.81 7.889 1 27.59 ? CBB HEM 410 A 1 HETATM 22 C C1C HEM . . . B 2 -5.35 11.43 11.365 1 15.19 ? C1C HEM 410 A 1 HETATM 23 C C2C HEM . . . B 2 -4.382 11.839 12.366 1 18.64 ? C2C HEM 410 A 1 HETATM 24 C C3C HEM . . . B 2 -4.943 12.807 13.103 1 16.71 ? C3C HEM 410 A 1 HETATM 25 C C4C HEM . . . B 2 -6.248 13.038 12.516 1 19.09 ? C4C HEM 410 A 1 HETATM 26 C CMC HEM . . . B 2 -2.947 11.33 12.453 1 23.23 ? CMC HEM 410 A 1 HETATM 27 C CAC HEM . . . B 2 -4.476 13.552 14.21 1 19.45 ? CAC HEM 410 A 1 HETATM 28 C CBC HEM . . . B 2 -3.426 13.245 15.13 1 22.94 ? CBC HEM 410 A 1 HETATM 29 C C1D HEM . . . B 2 -8.27 14.453 12.29 1 22.64 ? C1D HEM 410 A 1 HETATM 30 C C2D HEM . . . B 2 -9.084 15.594 12.698 1 18.5 ? C2D HEM 410 A 1 HETATM 31 C C3D HEM . . . B 2 -10.152 15.628 11.876 1 22.12 ? C3D HEM 410 A 1 HETATM 32 C C4D HEM . . . B 2 -9.984 14.52 10.94 1 19.27 ? C4D HEM 410 A 1 HETATM 33 C CMD HEM . . . B 2 -8.723 16.57 13.806 1 24.56 ? CMD HEM 410 A 1 HETATM 34 C CAD HEM . . . B 2 -11.264 16.65 11.911 1 22.68 ? CAD HEM 410 A 1 HETATM 35 C CBD HEM . . . B 2 -11.004 17.785 10.917 1 20.4 ? CBD HEM 410 A 1 HETATM 36 C CGD HEM . . . B 2 -12.135 18.793 10.87 1 23.77 ? CGD HEM 410 A 1 HETATM 37 O O1D HEM . . . B 2 -13.291 18.388 11.084 1 17.46 ? O1D HEM 410 A 1 HETATM 38 O O2D HEM . . . B 2 -11.871 19.982 10.605 1 21.28 ? O2D HEM 410 A 1 HETATM 39 N NA HEM . . . B 2 -9.702 12.175 9.089 1 17.11 ? NA HEM 410 A 1 HETATM 40 N NB HEM . . . B 2 -7.328 10.64 9.255 1 19.68 ? NB HEM 410 A 1 HETATM 41 N NC HEM . . . B 2 -6.49 12.205 11.448 1 18.06 ? NC HEM 410 A 1 HETATM 42 N ND HEM . . . B 2 -8.816 13.791 11.214 1 19.85 ? ND HEM 410 A 1 HETATM 43 FE FE HEM . . . B 2 -8.062 12.22 10.235 1 19.77 ? FE HEM 410 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #