data_1JJ7
#
_model_server_result.job_id            5MbLrRL5aSucivlWdNFkrA 
_model_server_result.datetime_utc      '2024-12-21 17:24:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jj7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":752}' 
#
_entry.id    1JJ7 
#
_exptl.entry_id    1JJ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1JJ7 
_cell.length_a            87.57 
_cell.length_b            87.57 
_cell.length_c            79.85 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JJ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 62' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D O HOH . A HOH 36 1_555 B MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc2 D O HOH . A HOH 40 1_555 B MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc3 D O HOH . A HOH 46 1_555 B MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? 
metalc ? metalc4 D O HOH . A HOH 61 1_555 B MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc5 A OG SER 57 A SER 545 1_555 B MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc6 C O2B ADP . A ADP 752 1_555 B MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1JJ7 
_atom_sites.fract_transf_matrix[1][1]    0.011419 
_atom_sites.fract_transf_matrix[1][2]    0.006593 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013186 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012523 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 902 902 MG MG . 
C 3 ADP A 1 752 752 ADP ADP . 
D 4 HOH A 1 1 1 HOH WAT . 
D 4 HOH A 2 2 2 HOH WAT . 
D 4 HOH A 3 3 3 HOH WAT . 
D 4 HOH A 4 4 4 HOH WAT . 
D 4 HOH A 5 5 5 HOH WAT . 
D 4 HOH A 6 6 6 HOH WAT . 
D 4 HOH A 7 7 7 HOH WAT . 
D 4 HOH A 8 8 8 HOH WAT . 
D 4 HOH A 9 9 9 HOH WAT . 
D 4 HOH A 10 10 10 HOH WAT . 
D 4 HOH A 11 11 11 HOH WAT . 
D 4 HOH A 12 12 12 HOH WAT . 
D 4 HOH A 13 13 13 HOH WAT . 
D 4 HOH A 14 14 14 HOH WAT . 
D 4 HOH A 15 15 15 HOH WAT . 
D 4 HOH A 16 16 16 HOH WAT . 
D 4 HOH A 17 17 17 HOH WAT . 
D 4 HOH A 18 18 18 HOH WAT . 
D 4 HOH A 19 19 19 HOH WAT . 
D 4 HOH A 20 20 20 HOH WAT . 
D 4 HOH A 21 21 21 HOH WAT . 
D 4 HOH A 22 22 22 HOH WAT . 
D 4 HOH A 23 23 23 HOH WAT . 
D 4 HOH A 24 24 24 HOH WAT . 
D 4 HOH A 25 25 25 HOH WAT . 
D 4 HOH A 26 26 26 HOH WAT . 
D 4 HOH A 27 27 27 HOH WAT . 
D 4 HOH A 28 28 28 HOH WAT . 
D 4 HOH A 29 29 29 HOH WAT . 
D 4 HOH A 30 30 30 HOH WAT . 
D 4 HOH A 31 31 31 HOH WAT . 
D 4 HOH A 32 32 32 HOH WAT . 
D 4 HOH A 33 33 33 HOH WAT . 
D 4 HOH A 34 34 34 HOH WAT . 
D 4 HOH A 35 35 35 HOH WAT . 
D 4 HOH A 36 36 36 HOH WAT . 
D 4 HOH A 37 37 37 HOH WAT . 
D 4 HOH A 38 38 38 HOH WAT . 
D 4 HOH A 39 39 39 HOH WAT . 
D 4 HOH A 40 40 40 HOH WAT . 
D 4 HOH A 41 41 41 HOH WAT . 
D 4 HOH A 42 42 42 HOH WAT . 
D 4 HOH A 43 43 43 HOH WAT . 
D 4 HOH A 44 44 44 HOH WAT . 
D 4 HOH A 45 45 45 HOH WAT . 
D 4 HOH A 46 46 46 HOH WAT . 
D 4 HOH A 47 47 47 HOH WAT . 
D 4 HOH A 48 48 48 HOH WAT . 
D 4 HOH A 49 49 49 HOH WAT . 
D 4 HOH A 50 50 50 HOH WAT . 
D 4 HOH A 51 51 51 HOH WAT . 
D 4 HOH A 52 52 52 HOH WAT . 
D 4 HOH A 53 53 53 HOH WAT . 
D 4 HOH A 54 54 54 HOH WAT . 
D 4 HOH A 55 55 55 HOH WAT . 
D 4 HOH A 56 56 56 HOH WAT . 
D 4 HOH A 57 57 57 HOH WAT . 
D 4 HOH A 58 58 58 HOH WAT . 
D 4 HOH A 59 59 59 HOH WAT . 
D 4 HOH A 60 60 60 HOH WAT . 
D 4 HOH A 61 61 61 HOH WAT . 
D 4 HOH A 62 62 62 HOH WAT . 
D 4 HOH A 63 63 63 HOH WAT . 
D 4 HOH A 64 64 64 HOH WAT . 
D 4 HOH A 65 65 65 HOH WAT . 
D 4 HOH A 66 66 66 HOH WAT . 
D 4 HOH A 67 67 67 HOH WAT . 
D 4 HOH A 68 68 68 HOH WAT . 
D 4 HOH A 69 69 69 HOH WAT . 
D 4 HOH A 70 70 70 HOH WAT . 
D 4 HOH A 71 71 71 HOH WAT . 
D 4 HOH A 72 72 72 HOH WAT . 
D 4 HOH A 73 73 73 HOH WAT . 
D 4 HOH A 74 74 74 HOH WAT . 
D 4 HOH A 75 75 75 HOH WAT . 
D 4 HOH A 76 76 76 HOH WAT . 
D 4 HOH A 77 77 77 HOH WAT . 
D 4 HOH A 78 78 78 HOH WAT . 
D 4 HOH A 79 79 79 HOH WAT . 
D 4 HOH A 80 80 80 HOH WAT . 
D 4 HOH A 81 81 81 HOH WAT . 
D 4 HOH A 82 82 82 HOH WAT . 
D 4 HOH A 83 83 83 HOH WAT . 
D 4 HOH A 84 84 84 HOH WAT . 
D 4 HOH A 85 85 85 HOH WAT . 
D 4 HOH A 86 86 86 HOH WAT . 
D 4 HOH A 87 87 87 HOH WAT . 
D 4 HOH A 88 88 88 HOH WAT . 
D 4 HOH A 89 89 89 HOH WAT . 
D 4 HOH A 90 90 90 HOH WAT . 
D 4 HOH A 91 91 91 HOH WAT . 
D 4 HOH A 92 92 92 HOH WAT . 
D 4 HOH A 93 93 93 HOH WAT . 
D 4 HOH A 94 94 94 HOH WAT . 
D 4 HOH A 95 95 95 HOH WAT . 
D 4 HOH A 96 96 96 HOH WAT . 
D 4 HOH A 97 97 97 HOH WAT . 
D 4 HOH A 98 98 98 HOH WAT . 
D 4 HOH A 99 99 99 HOH WAT . 
D 4 HOH A 100 100 100 HOH WAT . 
D 4 HOH A 101 101 101 HOH WAT . 
D 4 HOH A 102 102 102 HOH WAT . 
D 4 HOH A 103 103 103 HOH WAT . 
D 4 HOH A 104 104 104 HOH WAT . 
D 4 HOH A 105 105 105 HOH WAT . 
D 4 HOH A 106 106 106 HOH WAT . 
D 4 HOH A 107 107 107 HOH WAT . 
D 4 HOH A 108 108 108 HOH WAT . 
D 4 HOH A 109 109 109 HOH WAT . 
D 4 HOH A 110 110 110 HOH WAT . 
D 4 HOH A 111 111 111 HOH WAT . 
D 4 HOH A 112 112 112 HOH WAT . 
D 4 HOH A 113 113 113 HOH WAT . 
D 4 HOH A 114 114 114 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 146.602 10.366 15.072 1 31.68 ? PB ADP 752 A 1 
HETATM 2 O O1B ADP . . . C 3 147.884 10.163 15.891 1 34.38 ? O1B ADP 752 A 1 
HETATM 3 O O2B ADP . . . C 3 146.941 10.642 13.611 1 29.54 ? O2B ADP 752 A 1 
HETATM 4 O O3B ADP . . . C 3 145.888 11.525 15.679 1 30.99 ? O3B ADP 752 A 1 
HETATM 5 P PA ADP . . . C 3 145.209 8.031 14.145 1 31.97 ? PA ADP 752 A 1 
HETATM 6 O O1A ADP . . . C 3 146.379 7.318 13.695 1 34.26 ? O1A ADP 752 A 1 
HETATM 7 O O2A ADP . . . C 3 144.351 8.605 12.986 1 33.66 ? O2A ADP 752 A 1 
HETATM 8 O O3A ADP . . . C 3 145.63 9.129 15.217 1 33.34 ? O3A ADP 752 A 1 
HETATM 9 O O5' ADP . . . C 3 144.238 7.104 14.974 1 37.12 ? O5' ADP 752 A 1 
HETATM 10 C C5' ADP . . . C 3 144.816 6.527 16.042 1 34.41 ? C5' ADP 752 A 1 
HETATM 11 C C4' ADP . . . C 3 143.977 5.532 16.767 1 35.14 ? C4' ADP 752 A 1 
HETATM 12 O O4' ADP . . . C 3 143.207 4.726 15.878 1 32.67 ? O4' ADP 752 A 1 
HETATM 13 C C3' ADP . . . C 3 144.933 4.671 17.476 1 33.66 ? C3' ADP 752 A 1 
HETATM 14 O O3' ADP . . . C 3 145.109 5.108 18.788 1 38.8 ? O3' ADP 752 A 1 
HETATM 15 C C2' ADP . . . C 3 144.378 3.298 17.332 1 33.9 ? C2' ADP 752 A 1 
HETATM 16 O O2' ADP . . . C 3 143.703 3.015 18.531 1 36.83 ? O2' ADP 752 A 1 
HETATM 17 C C1' ADP . . . C 3 143.422 3.354 16.139 1 30.72 ? C1' ADP 752 A 1 
HETATM 18 N N9 ADP . . . C 3 144.051 2.729 14.925 1 26.43 ? N9 ADP 752 A 1 
HETATM 19 C C8 ADP . . . C 3 144.936 3.327 14.037 1 28.78 ? C8 ADP 752 A 1 
HETATM 20 N N7 ADP . . . C 3 145.265 2.445 13.065 1 30.34 ? N7 ADP 752 A 1 
HETATM 21 C C5 ADP . . . C 3 144.609 1.289 13.306 1 29.74 ? C5 ADP 752 A 1 
HETATM 22 C C6 ADP . . . C 3 144.567 0.062 12.645 1 31.35 ? C6 ADP 752 A 1 
HETATM 23 N N6 ADP . . . C 3 145.23 -0.127 11.505 1 31.63 ? N6 ADP 752 A 1 
HETATM 24 N N1 ADP . . . C 3 143.78 -0.968 13.151 1 27.61 ? N1 ADP 752 A 1 
HETATM 25 C C2 ADP . . . C 3 143.04 -0.792 14.307 1 27.35 ? C2 ADP 752 A 1 
HETATM 26 N N3 ADP . . . C 3 143.083 0.427 14.954 1 26.27 ? N3 ADP 752 A 1 
HETATM 27 C C4 ADP . . . C 3 143.853 1.449 14.476 1 29.41 ? C4 ADP 752 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#