data_1JJC # _model_server_result.job_id OFIRcHltIC_7cZBxYwSM1Q _model_server_result.datetime_utc '2024-12-26 21:58:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 1JJC # _exptl.entry_id 1JJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JJC _cell.length_a 173.4 _cell.length_b 173.4 _cell.length_c 138.4 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JJC _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE1 GLU 461 B GLU 461 1_555 D MN MN . B MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 D MN MN . B MN 901 1_555 G O HOH . B HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1JJC _atom_sites.fract_transf_matrix[1][1] 0.005767 _atom_sites.fract_transf_matrix[1][2] 0.003329 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006659 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FA5 A 1 999 999 FA5 FA5 . D 4 MN B 1 901 901 MN MN . E 5 SO4 B 1 902 291 SO4 SO4 . F 6 HOH A 1 1000 6 HOH HOH . F 6 HOH A 2 1001 7 HOH HOH . F 6 HOH A 3 1002 9 HOH HOH . F 6 HOH A 4 1003 14 HOH HOH . F 6 HOH A 5 1004 16 HOH HOH . F 6 HOH A 6 1005 18 HOH HOH . F 6 HOH A 7 1006 24 HOH HOH . F 6 HOH A 8 1007 28 HOH HOH . F 6 HOH A 9 1008 29 HOH HOH . F 6 HOH A 10 1009 36 HOH HOH . F 6 HOH A 11 1010 39 HOH HOH . F 6 HOH A 12 1011 40 HOH HOH . F 6 HOH A 13 1012 42 HOH HOH . F 6 HOH A 14 1013 44 HOH HOH . F 6 HOH A 15 1014 46 HOH HOH . F 6 HOH A 16 1015 60 HOH HOH . F 6 HOH A 17 1016 62 HOH HOH . F 6 HOH A 18 1017 67 HOH HOH . F 6 HOH A 19 1018 75 HOH HOH . F 6 HOH A 20 1019 77 HOH HOH . F 6 HOH A 21 1020 93 HOH HOH . F 6 HOH A 22 1021 96 HOH HOH . F 6 HOH A 23 1022 101 HOH HOH . F 6 HOH A 24 1023 119 HOH HOH . F 6 HOH A 25 1024 124 HOH HOH . F 6 HOH A 26 1025 127 HOH HOH . F 6 HOH A 27 1026 128 HOH HOH . F 6 HOH A 28 1027 131 HOH HOH . F 6 HOH A 29 1028 137 HOH HOH . F 6 HOH A 30 1029 141 HOH HOH . F 6 HOH A 31 1030 145 HOH HOH . F 6 HOH A 32 1031 147 HOH HOH . F 6 HOH A 33 1032 149 HOH HOH . F 6 HOH A 34 1033 154 HOH HOH . F 6 HOH A 35 1034 158 HOH HOH . F 6 HOH A 36 1035 165 HOH HOH . F 6 HOH A 37 1036 166 HOH HOH . F 6 HOH A 38 1037 183 HOH HOH . F 6 HOH A 39 1038 185 HOH HOH . F 6 HOH A 40 1039 195 HOH HOH . F 6 HOH A 41 1040 208 HOH HOH . F 6 HOH A 42 1041 212 HOH HOH . F 6 HOH A 43 1042 215 HOH HOH . F 6 HOH A 44 1043 219 HOH HOH . F 6 HOH A 45 1044 221 HOH HOH . F 6 HOH A 46 1045 224 HOH HOH . F 6 HOH A 47 1046 228 HOH HOH . F 6 HOH A 48 1047 231 HOH HOH . F 6 HOH A 49 1048 235 HOH HOH . F 6 HOH A 50 1049 236 HOH HOH . F 6 HOH A 51 1050 237 HOH HOH . F 6 HOH A 52 1051 246 HOH HOH . F 6 HOH A 53 1052 248 HOH HOH . F 6 HOH A 54 1053 251 HOH HOH . F 6 HOH A 55 1054 254 HOH HOH . F 6 HOH A 56 1055 260 HOH HOH . F 6 HOH A 57 1056 262 HOH HOH . F 6 HOH A 58 1057 264 HOH HOH . F 6 HOH A 59 1058 265 HOH HOH . F 6 HOH A 60 1059 277 HOH HOH . F 6 HOH A 61 1060 280 HOH HOH . F 6 HOH A 62 1061 283 HOH HOH . F 6 HOH A 63 1062 286 HOH HOH . F 6 HOH A 64 1063 289 HOH HOH . F 6 HOH A 65 1064 290 HOH HOH . G 6 HOH B 1 903 2 HOH HOH . G 6 HOH B 2 904 3 HOH HOH . G 6 HOH B 3 905 4 HOH HOH . G 6 HOH B 4 906 5 HOH HOH . G 6 HOH B 5 907 8 HOH HOH . G 6 HOH B 6 908 10 HOH HOH . G 6 HOH B 7 909 11 HOH HOH . G 6 HOH B 8 910 12 HOH HOH . G 6 HOH B 9 911 13 HOH HOH . G 6 HOH B 10 912 15 HOH HOH . G 6 HOH B 11 913 17 HOH HOH . G 6 HOH B 12 914 19 HOH HOH . G 6 HOH B 13 915 20 HOH HOH . G 6 HOH B 14 916 21 HOH HOH . G 6 HOH B 15 917 22 HOH HOH . G 6 HOH B 16 918 23 HOH HOH . G 6 HOH B 17 919 25 HOH HOH . G 6 HOH B 18 920 26 HOH HOH . G 6 HOH B 19 921 27 HOH HOH . G 6 HOH B 20 922 30 HOH HOH . G 6 HOH B 21 923 31 HOH HOH . G 6 HOH B 22 924 32 HOH HOH . G 6 HOH B 23 925 33 HOH HOH . G 6 HOH B 24 926 34 HOH HOH . G 6 HOH B 25 927 35 HOH HOH . G 6 HOH B 26 928 37 HOH HOH . G 6 HOH B 27 929 38 HOH HOH . G 6 HOH B 28 930 41 HOH HOH . G 6 HOH B 29 931 43 HOH HOH . G 6 HOH B 30 932 45 HOH HOH . G 6 HOH B 31 933 47 HOH HOH . G 6 HOH B 32 934 48 HOH HOH . G 6 HOH B 33 935 49 HOH HOH . G 6 HOH B 34 936 50 HOH HOH . G 6 HOH B 35 937 51 HOH HOH . G 6 HOH B 36 938 52 HOH HOH . G 6 HOH B 37 939 53 HOH HOH . G 6 HOH B 38 940 54 HOH HOH . G 6 HOH B 39 941 55 HOH HOH . G 6 HOH B 40 942 56 HOH HOH . G 6 HOH B 41 943 57 HOH HOH . G 6 HOH B 42 944 58 HOH HOH . G 6 HOH B 43 945 59 HOH HOH . G 6 HOH B 44 946 61 HOH HOH . G 6 HOH B 45 947 63 HOH HOH . G 6 HOH B 46 948 64 HOH HOH . G 6 HOH B 47 949 65 HOH HOH . G 6 HOH B 48 950 66 HOH HOH . G 6 HOH B 49 951 68 HOH HOH . G 6 HOH B 50 952 69 HOH HOH . G 6 HOH B 51 953 70 HOH HOH . G 6 HOH B 52 954 71 HOH HOH . G 6 HOH B 53 955 72 HOH HOH . G 6 HOH B 54 956 73 HOH HOH . G 6 HOH B 55 957 74 HOH HOH . G 6 HOH B 56 958 76 HOH HOH . G 6 HOH B 57 959 78 HOH HOH . G 6 HOH B 58 960 79 HOH HOH . G 6 HOH B 59 961 80 HOH HOH . G 6 HOH B 60 962 81 HOH HOH . G 6 HOH B 61 963 82 HOH HOH . G 6 HOH B 62 964 83 HOH HOH . G 6 HOH B 63 965 84 HOH HOH . G 6 HOH B 64 966 85 HOH HOH . G 6 HOH B 65 967 86 HOH HOH . G 6 HOH B 66 968 87 HOH HOH . G 6 HOH B 67 969 88 HOH HOH . G 6 HOH B 68 970 89 HOH HOH . G 6 HOH B 69 971 90 HOH HOH . G 6 HOH B 70 972 91 HOH HOH . G 6 HOH B 71 973 92 HOH HOH . G 6 HOH B 72 974 94 HOH HOH . G 6 HOH B 73 975 95 HOH HOH . G 6 HOH B 74 976 97 HOH HOH . G 6 HOH B 75 977 98 HOH HOH . G 6 HOH B 76 978 99 HOH HOH . G 6 HOH B 77 979 100 HOH HOH . G 6 HOH B 78 980 102 HOH HOH . G 6 HOH B 79 981 103 HOH HOH . G 6 HOH B 80 982 104 HOH HOH . G 6 HOH B 81 983 105 HOH HOH . G 6 HOH B 82 984 106 HOH HOH . G 6 HOH B 83 985 107 HOH HOH . G 6 HOH B 84 986 108 HOH HOH . G 6 HOH B 85 987 109 HOH HOH . G 6 HOH B 86 988 110 HOH HOH . G 6 HOH B 87 989 111 HOH HOH . G 6 HOH B 88 990 112 HOH HOH . G 6 HOH B 89 991 113 HOH HOH . G 6 HOH B 90 992 114 HOH HOH . G 6 HOH B 91 993 115 HOH HOH . G 6 HOH B 92 994 116 HOH HOH . G 6 HOH B 93 995 117 HOH HOH . G 6 HOH B 94 996 118 HOH HOH . G 6 HOH B 95 997 120 HOH HOH . G 6 HOH B 96 998 121 HOH HOH . G 6 HOH B 97 999 122 HOH HOH . G 6 HOH B 98 1000 123 HOH HOH . G 6 HOH B 99 1001 125 HOH HOH . G 6 HOH B 100 1002 126 HOH HOH . G 6 HOH B 101 1003 129 HOH HOH . G 6 HOH B 102 1004 130 HOH HOH . G 6 HOH B 103 1005 132 HOH HOH . G 6 HOH B 104 1006 133 HOH HOH . G 6 HOH B 105 1007 134 HOH HOH . G 6 HOH B 106 1008 135 HOH HOH . G 6 HOH B 107 1009 136 HOH HOH . G 6 HOH B 108 1010 138 HOH HOH . G 6 HOH B 109 1011 139 HOH HOH . G 6 HOH B 110 1012 140 HOH HOH . G 6 HOH B 111 1013 142 HOH HOH . G 6 HOH B 112 1014 143 HOH HOH . G 6 HOH B 113 1015 144 HOH HOH . G 6 HOH B 114 1016 146 HOH HOH . G 6 HOH B 115 1017 148 HOH HOH . G 6 HOH B 116 1018 150 HOH HOH . G 6 HOH B 117 1019 151 HOH HOH . G 6 HOH B 118 1020 152 HOH HOH . G 6 HOH B 119 1021 153 HOH HOH . G 6 HOH B 120 1022 155 HOH HOH . G 6 HOH B 121 1023 156 HOH HOH . G 6 HOH B 122 1024 157 HOH HOH . G 6 HOH B 123 1025 159 HOH HOH . G 6 HOH B 124 1026 160 HOH HOH . G 6 HOH B 125 1027 161 HOH HOH . G 6 HOH B 126 1028 162 HOH HOH . G 6 HOH B 127 1029 163 HOH HOH . G 6 HOH B 128 1030 164 HOH HOH . G 6 HOH B 129 1031 167 HOH HOH . G 6 HOH B 130 1032 168 HOH HOH . G 6 HOH B 131 1033 169 HOH HOH . G 6 HOH B 132 1034 170 HOH HOH . G 6 HOH B 133 1035 171 HOH HOH . G 6 HOH B 134 1036 172 HOH HOH . G 6 HOH B 135 1037 173 HOH HOH . G 6 HOH B 136 1038 174 HOH HOH . G 6 HOH B 137 1039 175 HOH HOH . G 6 HOH B 138 1040 176 HOH HOH . G 6 HOH B 139 1041 177 HOH HOH . G 6 HOH B 140 1042 178 HOH HOH . G 6 HOH B 141 1043 179 HOH HOH . G 6 HOH B 142 1044 180 HOH HOH . G 6 HOH B 143 1045 181 HOH HOH . G 6 HOH B 144 1046 182 HOH HOH . G 6 HOH B 145 1047 184 HOH HOH . G 6 HOH B 146 1048 186 HOH HOH . G 6 HOH B 147 1049 187 HOH HOH . G 6 HOH B 148 1050 188 HOH HOH . G 6 HOH B 149 1051 189 HOH HOH . G 6 HOH B 150 1052 190 HOH HOH . G 6 HOH B 151 1053 191 HOH HOH . G 6 HOH B 152 1054 192 HOH HOH . G 6 HOH B 153 1055 193 HOH HOH . G 6 HOH B 154 1056 194 HOH HOH . G 6 HOH B 155 1057 196 HOH HOH . G 6 HOH B 156 1058 197 HOH HOH . G 6 HOH B 157 1059 198 HOH HOH . G 6 HOH B 158 1060 199 HOH HOH . G 6 HOH B 159 1061 200 HOH HOH . G 6 HOH B 160 1062 201 HOH HOH . G 6 HOH B 161 1063 202 HOH HOH . G 6 HOH B 162 1064 203 HOH HOH . G 6 HOH B 163 1065 204 HOH HOH . G 6 HOH B 164 1066 205 HOH HOH . G 6 HOH B 165 1067 206 HOH HOH . G 6 HOH B 166 1068 207 HOH HOH . G 6 HOH B 167 1069 209 HOH HOH . G 6 HOH B 168 1070 210 HOH HOH . G 6 HOH B 169 1071 211 HOH HOH . G 6 HOH B 170 1072 213 HOH HOH . G 6 HOH B 171 1073 214 HOH HOH . G 6 HOH B 172 1074 216 HOH HOH . G 6 HOH B 173 1075 217 HOH HOH . G 6 HOH B 174 1076 218 HOH HOH . G 6 HOH B 175 1077 220 HOH HOH . G 6 HOH B 176 1078 222 HOH HOH . G 6 HOH B 177 1079 223 HOH HOH . G 6 HOH B 178 1080 225 HOH HOH . G 6 HOH B 179 1081 226 HOH HOH . G 6 HOH B 180 1082 227 HOH HOH . G 6 HOH B 181 1083 229 HOH HOH . G 6 HOH B 182 1084 230 HOH HOH . G 6 HOH B 183 1085 232 HOH HOH . G 6 HOH B 184 1086 233 HOH HOH . G 6 HOH B 185 1087 234 HOH HOH . G 6 HOH B 186 1088 238 HOH HOH . G 6 HOH B 187 1089 239 HOH HOH . G 6 HOH B 188 1090 240 HOH HOH . G 6 HOH B 189 1091 241 HOH HOH . G 6 HOH B 190 1092 242 HOH HOH . G 6 HOH B 191 1093 243 HOH HOH . G 6 HOH B 192 1094 244 HOH HOH . G 6 HOH B 193 1095 245 HOH HOH . G 6 HOH B 194 1096 247 HOH HOH . G 6 HOH B 195 1097 249 HOH HOH . G 6 HOH B 196 1098 250 HOH HOH . G 6 HOH B 197 1099 252 HOH HOH . G 6 HOH B 198 1100 253 HOH HOH . G 6 HOH B 199 1101 255 HOH HOH . G 6 HOH B 200 1102 256 HOH HOH . G 6 HOH B 201 1103 257 HOH HOH . G 6 HOH B 202 1104 258 HOH HOH . G 6 HOH B 203 1105 259 HOH HOH . G 6 HOH B 204 1106 261 HOH HOH . G 6 HOH B 205 1107 263 HOH HOH . G 6 HOH B 206 1108 266 HOH HOH . G 6 HOH B 207 1109 267 HOH HOH . G 6 HOH B 208 1110 268 HOH HOH . G 6 HOH B 209 1111 269 HOH HOH . G 6 HOH B 210 1112 270 HOH HOH . G 6 HOH B 211 1113 271 HOH HOH . G 6 HOH B 212 1114 272 HOH HOH . G 6 HOH B 213 1115 273 HOH HOH . G 6 HOH B 214 1116 274 HOH HOH . G 6 HOH B 215 1117 275 HOH HOH . G 6 HOH B 216 1118 276 HOH HOH . G 6 HOH B 217 1119 278 HOH HOH . G 6 HOH B 218 1120 279 HOH HOH . G 6 HOH B 219 1121 281 HOH HOH . G 6 HOH B 220 1122 282 HOH HOH . G 6 HOH B 221 1123 284 HOH HOH . G 6 HOH B 222 1124 285 HOH HOH . G 6 HOH B 223 1125 287 HOH HOH . G 6 HOH B 224 1126 288 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 23.429 _atom_site.Cartn_y 78.946 _atom_site.Cartn_z 21.041 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 901 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #