data_1JK1 # _model_server_result.job_id zS1I0lFF1uGdmf5EhhUacQ _model_server_result.datetime_utc '2024-11-23 10:17:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jk1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 1JK1 # _exptl.entry_id 1JK1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JK1 _cell.length_a 44.26 _cell.length_b 56.24 _cell.length_c 131.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C SG CYS 7 A CYS 107 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 C SG CYS 12 A CYS 112 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc3 C NE2 HIS 25 A HIS 125 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc4 C NE2 HIS 29 A HIS 129 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc5 C SG CYS 37 A CYS 137 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc6 C SG CYS 40 A CYS 140 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc7 C NE2 HIS 53 A HIS 153 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc8 C NE2 HIS 57 A HIS 157 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc9 C SG CYS 65 A CYS 165 1_555 F ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc10 C SG CYS 68 A CYS 168 1_555 F ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc11 C NE2 HIS 81 A HIS 181 1_555 F ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc12 C NE2 HIS 85 A HIS 185 1_555 F ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? hydrog WATSON-CRICK hydrog1 A N1 DG 2 B DG 2 1_555 B N3 DC 11 C DC 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 2 B DG 2 1_555 B O2 DC 11 C DC 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 2 B DG 2 1_555 B N4 DC 11 C DC 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 3 B DC 3 1_555 B N1 DG 10 C DG 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 3 B DC 3 1_555 B O6 DG 10 C DG 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 3 B DC 3 1_555 B N2 DG 10 C DG 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 4 B DG 4 1_555 B N3 DC 9 C DC 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 4 B DG 4 1_555 B O2 DC 9 C DC 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 4 B DG 4 1_555 B N4 DC 9 C DC 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 5 B DT 5 1_555 B N1 DA 8 C DA 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 5 B DT 5 1_555 B N6 DA 8 C DA 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DG 6 B DG 6 1_555 B N3 DC 7 C DC 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 DG 6 B DG 6 1_555 B O2 DC 7 C DC 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 DG 6 B DG 6 1_555 B N4 DC 7 C DC 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DG 7 B DG 7 1_555 B N3 DC 6 C DC 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 DG 7 B DG 7 1_555 B O2 DC 6 C DC 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 DG 7 B DG 7 1_555 B N4 DC 6 C DC 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 8 B DG 8 1_555 B N3 DC 5 C DC 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 8 B DG 8 1_555 B O2 DC 5 C DC 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 8 B DG 8 1_555 B N4 DC 5 C DC 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 B DC 9 1_555 B N1 DG 4 C DG 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 B DC 9 1_555 B O6 DG 4 C DG 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 B DC 9 1_555 B N2 DG 4 C DG 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 B DG 10 1_555 B N3 DC 3 C DC 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 B DG 10 1_555 B O2 DC 3 C DC 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 B DG 10 1_555 B N4 DC 3 C DC 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N1 DG 11 B DG 11 1_555 B N3 DC 2 C DC 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N2 DG 11 B DG 11 1_555 B O2 DC 2 C DC 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O6 DG 11 B DG 11 1_555 B N4 DC 2 C DC 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1JK1 _atom_sites.fract_transf_matrix[1][1] 0.022594 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017781 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 201 201 ZN ZN . E 4 ZN A 1 202 202 ZN ZN . F 4 ZN A 1 203 203 ZN ZN . G 5 HOH B 1 310 310 HOH HOH . G 5 HOH B 2 316 316 HOH HOH . G 5 HOH B 3 322 322 HOH HOH . G 5 HOH B 4 323 323 HOH HOH . G 5 HOH B 5 333 333 HOH HOH . G 5 HOH B 6 335 335 HOH HOH . G 5 HOH B 7 336 336 HOH HOH . G 5 HOH B 8 337 337 HOH HOH . G 5 HOH B 9 339 339 HOH HOH . G 5 HOH B 10 340 340 HOH HOH . G 5 HOH B 11 343 343 HOH HOH . G 5 HOH B 12 347 347 HOH HOH . G 5 HOH B 13 348 348 HOH HOH . G 5 HOH B 14 350 350 HOH HOH . G 5 HOH B 15 355 355 HOH HOH . G 5 HOH B 16 366 366 HOH HOH . G 5 HOH B 17 367 367 HOH HOH . G 5 HOH B 18 368 368 HOH HOH . G 5 HOH B 19 371 371 HOH HOH . G 5 HOH B 20 375 375 HOH HOH . G 5 HOH B 21 380 380 HOH HOH . G 5 HOH B 22 382 382 HOH HOH . G 5 HOH B 23 387 387 HOH HOH . G 5 HOH B 24 388 388 HOH HOH . G 5 HOH B 25 396 396 HOH HOH . G 5 HOH B 26 402 402 HOH HOH . G 5 HOH B 27 410 410 HOH HOH . G 5 HOH B 28 416 416 HOH HOH . G 5 HOH B 29 419 419 HOH HOH . G 5 HOH B 30 420 420 HOH HOH . G 5 HOH B 31 421 421 HOH HOH . G 5 HOH B 32 428 428 HOH HOH . G 5 HOH B 33 432 432 HOH HOH . G 5 HOH B 34 435 435 HOH HOH . H 5 HOH C 1 314 314 HOH HOH . H 5 HOH C 2 328 328 HOH HOH . H 5 HOH C 3 334 334 HOH HOH . H 5 HOH C 4 341 341 HOH HOH . H 5 HOH C 5 342 342 HOH HOH . H 5 HOH C 6 345 345 HOH HOH . H 5 HOH C 7 346 346 HOH HOH . H 5 HOH C 8 351 351 HOH HOH . H 5 HOH C 9 352 352 HOH HOH . H 5 HOH C 10 353 353 HOH HOH . H 5 HOH C 11 356 356 HOH HOH . H 5 HOH C 12 358 358 HOH HOH . H 5 HOH C 13 360 360 HOH HOH . H 5 HOH C 14 362 362 HOH HOH . H 5 HOH C 15 369 369 HOH HOH . H 5 HOH C 16 376 376 HOH HOH . H 5 HOH C 17 379 379 HOH HOH . H 5 HOH C 18 381 381 HOH HOH . H 5 HOH C 19 384 384 HOH HOH . H 5 HOH C 20 389 389 HOH HOH . H 5 HOH C 21 394 394 HOH HOH . H 5 HOH C 22 395 395 HOH HOH . H 5 HOH C 23 397 397 HOH HOH . H 5 HOH C 24 398 398 HOH HOH . H 5 HOH C 25 399 399 HOH HOH . H 5 HOH C 26 400 400 HOH HOH . H 5 HOH C 27 404 404 HOH HOH . H 5 HOH C 28 407 407 HOH HOH . H 5 HOH C 29 408 408 HOH HOH . H 5 HOH C 30 411 411 HOH HOH . H 5 HOH C 31 425 425 HOH HOH . H 5 HOH C 32 429 429 HOH HOH . I 5 HOH A 1 301 301 HOH HOH . I 5 HOH A 2 302 302 HOH HOH . I 5 HOH A 3 303 303 HOH HOH . I 5 HOH A 4 304 304 HOH HOH . I 5 HOH A 5 305 305 HOH HOH . I 5 HOH A 6 306 306 HOH HOH . I 5 HOH A 7 307 307 HOH HOH . I 5 HOH A 8 308 308 HOH HOH . I 5 HOH A 9 309 309 HOH HOH . I 5 HOH A 10 311 311 HOH HOH . I 5 HOH A 11 312 312 HOH HOH . I 5 HOH A 12 313 313 HOH HOH . I 5 HOH A 13 315 315 HOH HOH . I 5 HOH A 14 317 317 HOH HOH . I 5 HOH A 15 318 318 HOH HOH . I 5 HOH A 16 319 319 HOH HOH . I 5 HOH A 17 320 320 HOH HOH . I 5 HOH A 18 321 321 HOH HOH . I 5 HOH A 19 324 324 HOH HOH . I 5 HOH A 20 325 325 HOH HOH . I 5 HOH A 21 326 326 HOH HOH . I 5 HOH A 22 327 327 HOH HOH . I 5 HOH A 23 329 329 HOH HOH . I 5 HOH A 24 330 330 HOH HOH . I 5 HOH A 25 331 331 HOH HOH . I 5 HOH A 26 332 332 HOH HOH . I 5 HOH A 27 338 338 HOH HOH . I 5 HOH A 28 344 344 HOH HOH . I 5 HOH A 29 349 349 HOH HOH . I 5 HOH A 30 354 354 HOH HOH . I 5 HOH A 31 357 357 HOH HOH . I 5 HOH A 32 359 359 HOH HOH . I 5 HOH A 33 361 361 HOH HOH . I 5 HOH A 34 363 363 HOH HOH . I 5 HOH A 35 364 364 HOH HOH . I 5 HOH A 36 365 365 HOH HOH . I 5 HOH A 37 370 370 HOH HOH . I 5 HOH A 38 372 372 HOH HOH . I 5 HOH A 39 373 373 HOH HOH . I 5 HOH A 40 374 374 HOH HOH . I 5 HOH A 41 377 377 HOH HOH . I 5 HOH A 42 378 378 HOH HOH . I 5 HOH A 43 383 383 HOH HOH . I 5 HOH A 44 385 385 HOH HOH . I 5 HOH A 45 386 386 HOH HOH . I 5 HOH A 46 390 390 HOH HOH . I 5 HOH A 47 391 391 HOH HOH . I 5 HOH A 48 392 392 HOH HOH . I 5 HOH A 49 393 393 HOH HOH . I 5 HOH A 50 401 401 HOH HOH . I 5 HOH A 51 403 403 HOH HOH . I 5 HOH A 52 405 405 HOH HOH . I 5 HOH A 53 406 406 HOH HOH . I 5 HOH A 54 409 409 HOH HOH . I 5 HOH A 55 412 412 HOH HOH . I 5 HOH A 56 413 413 HOH HOH . I 5 HOH A 57 414 414 HOH HOH . I 5 HOH A 58 415 415 HOH HOH . I 5 HOH A 59 417 417 HOH HOH . I 5 HOH A 60 418 418 HOH HOH . I 5 HOH A 61 422 422 HOH HOH . I 5 HOH A 62 423 423 HOH HOH . I 5 HOH A 63 424 424 HOH HOH . I 5 HOH A 64 426 426 HOH HOH . I 5 HOH A 65 427 427 HOH HOH . I 5 HOH A 66 430 430 HOH HOH . I 5 HOH A 67 431 431 HOH HOH . I 5 HOH A 68 433 433 HOH HOH . I 5 HOH A 69 434 434 HOH HOH . I 5 HOH A 70 436 436 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -1 _atom_site.Cartn_y 6.9 _atom_site.Cartn_z 65.232 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #