data_1JK8
#
_model_server_result.job_id            OcrOLQlrIUstvVGpbiJHRA 
_model_server_result.datetime_utc      '2025-08-03 19:35:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jk8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    1JK8 
#
_exptl.entry_id    1JK8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.48 
_cell.angle_gamma         90 
_cell.entry_id            1JK8 
_cell.length_a            66.034 
_cell.length_b            42.862 
_cell.length_c            87.467 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JK8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 13 B CYS 15 1_555 B SG CYS 77 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 B SG CYS 115 B CYS 117 1_555 B SG CYS 171 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 D C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1JK8 
_atom_sites.fract_transf_matrix[1][1]    0.015144 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003352 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01171 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG A 1 401 401 NAG NAG . 
E 5 HOH A 1 402 402 HOH HOH . 
E 5 HOH A 2 403 403 HOH HOH . 
E 5 HOH A 3 404 404 HOH HOH . 
E 5 HOH A 4 405 405 HOH HOH . 
E 5 HOH A 5 406 406 HOH HOH . 
E 5 HOH A 6 407 407 HOH HOH . 
E 5 HOH A 7 408 408 HOH HOH . 
E 5 HOH A 8 409 409 HOH HOH . 
E 5 HOH A 9 410 410 HOH HOH . 
E 5 HOH A 10 411 411 HOH HOH . 
E 5 HOH A 11 412 412 HOH HOH . 
E 5 HOH A 12 413 413 HOH HOH . 
E 5 HOH A 13 414 414 HOH HOH . 
E 5 HOH A 14 415 415 HOH HOH . 
E 5 HOH A 15 416 416 HOH HOH . 
E 5 HOH A 16 417 417 HOH HOH . 
E 5 HOH A 17 418 418 HOH HOH . 
E 5 HOH A 18 419 419 HOH HOH . 
E 5 HOH A 19 420 420 HOH HOH . 
E 5 HOH A 20 421 421 HOH HOH . 
E 5 HOH A 21 422 422 HOH HOH . 
E 5 HOH A 22 423 423 HOH HOH . 
E 5 HOH A 23 424 424 HOH HOH . 
E 5 HOH A 24 425 425 HOH HOH . 
E 5 HOH A 25 426 426 HOH HOH . 
E 5 HOH A 26 427 427 HOH HOH . 
E 5 HOH A 27 428 428 HOH HOH . 
E 5 HOH A 28 429 429 HOH HOH . 
E 5 HOH A 29 430 430 HOH HOH . 
E 5 HOH A 30 431 431 HOH HOH . 
E 5 HOH A 31 432 432 HOH HOH . 
E 5 HOH A 32 433 433 HOH HOH . 
E 5 HOH A 33 434 434 HOH HOH . 
E 5 HOH A 34 435 435 HOH HOH . 
E 5 HOH A 35 436 436 HOH HOH . 
F 5 HOH B 1 193 193 HOH HOH . 
F 5 HOH B 2 194 194 HOH HOH . 
F 5 HOH B 3 195 195 HOH HOH . 
F 5 HOH B 4 196 196 HOH HOH . 
F 5 HOH B 5 197 197 HOH HOH . 
F 5 HOH B 6 198 198 HOH HOH . 
F 5 HOH B 7 199 199 HOH HOH . 
F 5 HOH B 8 200 200 HOH HOH . 
F 5 HOH B 9 201 201 HOH HOH . 
F 5 HOH B 10 202 202 HOH HOH . 
F 5 HOH B 11 203 203 HOH HOH . 
F 5 HOH B 12 204 204 HOH HOH . 
F 5 HOH B 13 205 205 HOH HOH . 
F 5 HOH B 14 206 206 HOH HOH . 
F 5 HOH B 15 207 207 HOH HOH . 
F 5 HOH B 16 208 208 HOH HOH . 
F 5 HOH B 17 209 209 HOH HOH . 
F 5 HOH B 18 210 210 HOH HOH . 
F 5 HOH B 19 211 211 HOH HOH . 
F 5 HOH B 20 212 212 HOH HOH . 
F 5 HOH B 21 213 213 HOH HOH . 
F 5 HOH B 22 214 214 HOH HOH . 
F 5 HOH B 23 215 215 HOH HOH . 
F 5 HOH B 24 216 216 HOH HOH . 
F 5 HOH B 25 217 217 HOH HOH . 
F 5 HOH B 26 218 218 HOH HOH . 
F 5 HOH B 27 219 219 HOH HOH . 
F 5 HOH B 28 220 220 HOH HOH . 
F 5 HOH B 29 221 221 HOH HOH . 
F 5 HOH B 30 222 222 HOH HOH . 
F 5 HOH B 31 223 223 HOH HOH . 
F 5 HOH B 32 224 224 HOH HOH . 
G 5 HOH C 1 15 15 HOH HOH . 
G 5 HOH C 2 16 16 HOH HOH . 
G 5 HOH C 3 17 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 15.6 -7.718 -14.644 1 65.02 ? C1 NAG 401 A 1 
HETATM 2 C C2 NAG . . . D 4 16 -9.154 -14.279 1 68.61 ? C2 NAG 401 A 1 
HETATM 3 C C3 NAG . . . D 4 17.324 -9.519 -14.955 1 70.86 ? C3 NAG 401 A 1 
HETATM 4 C C4 NAG . . . D 4 17.252 -9.241 -16.462 1 71.32 ? C4 NAG 401 A 1 
HETATM 5 C C5 NAG . . . D 4 16.781 -7.805 -16.728 1 70.78 ? C5 NAG 401 A 1 
HETATM 6 C C6 NAG . . . D 4 16.585 -7.521 -18.214 1 71.77 ? C6 NAG 401 A 1 
HETATM 7 C C7 NAG . . . D 4 15.04 -9.494 -12.091 1 73.11 ? C7 NAG 401 A 1 
HETATM 8 C C8 NAG . . . D 4 15.251 -9.613 -10.588 1 73.93 ? C8 NAG 401 A 1 
HETATM 9 N N2 NAG . . . D 4 16.122 -9.292 -12.84 1 70.52 ? N2 NAG 401 A 1 
HETATM 10 O O3 NAG . . . D 4 17.606 -10.895 -14.737 1 71.99 ? O3 NAG 401 A 1 
HETATM 11 O O4 NAG . . . D 4 18.531 -9.434 -17.051 1 72.97 ? O4 NAG 401 A 1 
HETATM 12 O O5 NAG . . . D 4 15.518 -7.565 -16.067 1 67.51 ? O5 NAG 401 A 1 
HETATM 13 O O6 NAG . . . D 4 15.266 -7.84 -18.643 1 72.34 ? O6 NAG 401 A 1 
HETATM 14 O O7 NAG . . . D 4 13.902 -9.581 -12.561 1 73.82 ? O7 NAG 401 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#