data_1JKK
#
_model_server_result.job_id            dYTzfGfl6dgiN88ByK6jVg 
_model_server_result.datetime_utc      '2024-11-24 18:27:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jkk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":300}' 
#
_entry.id    1JKK 
#
_exptl.entry_id    1JKK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1JKK 
_cell.length_a            46.63 
_cell.length_b            62.43 
_cell.length_c            88.67 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JKK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 143 A ASN 144 1_555 B MG MG . A MG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? 
metalc ? metalc2 A OD2 ASP 160 A ASP 161 1_555 B MG MG . A MG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc3 C O2A ANP . A ANP 300 1_555 B MG MG . A MG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc4 C O2B ANP . A ANP 300 1_555 B MG MG . A MG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     1JKK 
_atom_sites.fract_transf_matrix[1][1]    0.021445 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016018 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 510 510 MG MG . 
C 3 ANP A 1 300 300 ANP ANP . 
D 4 HOH A 1 400 400 HOH HOH . 
D 4 HOH A 2 401 401 HOH HOH . 
D 4 HOH A 3 402 402 HOH HOH . 
D 4 HOH A 4 403 403 HOH HOH . 
D 4 HOH A 5 404 404 HOH HOH . 
D 4 HOH A 6 405 405 HOH HOH . 
D 4 HOH A 7 406 406 HOH HOH . 
D 4 HOH A 8 407 407 HOH HOH . 
D 4 HOH A 9 408 408 HOH HOH . 
D 4 HOH A 10 409 409 HOH HOH . 
D 4 HOH A 11 410 410 HOH HOH . 
D 4 HOH A 12 411 411 HOH HOH . 
D 4 HOH A 13 412 412 HOH HOH . 
D 4 HOH A 14 413 413 HOH HOH . 
D 4 HOH A 15 415 415 HOH HOH . 
D 4 HOH A 16 416 416 HOH HOH . 
D 4 HOH A 17 417 417 HOH HOH . 
D 4 HOH A 18 418 418 HOH HOH . 
D 4 HOH A 19 419 419 HOH HOH . 
D 4 HOH A 20 420 420 HOH HOH . 
D 4 HOH A 21 421 421 HOH HOH . 
D 4 HOH A 22 423 423 HOH HOH . 
D 4 HOH A 23 424 424 HOH HOH . 
D 4 HOH A 24 425 425 HOH HOH . 
D 4 HOH A 25 426 426 HOH HOH . 
D 4 HOH A 26 427 427 HOH HOH . 
D 4 HOH A 27 428 428 HOH HOH . 
D 4 HOH A 28 429 429 HOH HOH . 
D 4 HOH A 29 430 430 HOH HOH . 
D 4 HOH A 30 431 431 HOH HOH . 
D 4 HOH A 31 434 434 HOH HOH . 
D 4 HOH A 32 436 436 HOH HOH . 
D 4 HOH A 33 437 437 HOH HOH . 
D 4 HOH A 34 438 438 HOH HOH . 
D 4 HOH A 35 440 440 HOH HOH . 
D 4 HOH A 36 441 441 HOH HOH . 
D 4 HOH A 37 442 442 HOH HOH . 
D 4 HOH A 38 445 445 HOH HOH . 
D 4 HOH A 39 446 446 HOH HOH . 
D 4 HOH A 40 447 447 HOH HOH . 
D 4 HOH A 41 448 448 HOH HOH . 
D 4 HOH A 42 452 452 HOH HOH . 
D 4 HOH A 43 453 453 HOH HOH . 
D 4 HOH A 44 455 455 HOH HOH . 
D 4 HOH A 45 459 459 HOH HOH . 
D 4 HOH A 46 460 460 HOH HOH . 
D 4 HOH A 47 461 461 HOH HOH . 
D 4 HOH A 48 463 463 HOH HOH . 
D 4 HOH A 49 464 464 HOH HOH . 
D 4 HOH A 50 465 465 HOH HOH . 
D 4 HOH A 51 468 468 HOH HOH . 
D 4 HOH A 52 470 470 HOH HOH . 
D 4 HOH A 53 471 471 HOH HOH . 
D 4 HOH A 54 472 472 HOH HOH . 
D 4 HOH A 55 474 474 HOH HOH . 
D 4 HOH A 56 478 478 HOH HOH . 
D 4 HOH A 57 479 479 HOH HOH . 
D 4 HOH A 58 481 481 HOH HOH . 
D 4 HOH A 59 484 484 HOH HOH . 
D 4 HOH A 60 488 488 HOH HOH . 
D 4 HOH A 61 492 492 HOH HOH . 
D 4 HOH A 62 494 494 HOH HOH . 
D 4 HOH A 63 496 496 HOH HOH . 
D 4 HOH A 64 497 497 HOH HOH . 
D 4 HOH A 65 499 499 HOH HOH . 
D 4 HOH A 66 501 501 HOH HOH . 
D 4 HOH A 67 503 503 HOH HOH . 
D 4 HOH A 68 507 507 HOH HOH . 
D 4 HOH A 69 508 508 HOH HOH . 
D 4 HOH A 70 511 511 HOH HOH . 
D 4 HOH A 71 515 515 HOH HOH . 
D 4 HOH A 72 516 516 HOH HOH . 
D 4 HOH A 73 520 520 HOH HOH . 
D 4 HOH A 74 522 522 HOH HOH . 
D 4 HOH A 75 523 523 HOH HOH . 
D 4 HOH A 76 524 524 HOH HOH . 
D 4 HOH A 77 526 526 HOH HOH . 
D 4 HOH A 78 527 527 HOH HOH . 
D 4 HOH A 79 528 528 HOH HOH . 
D 4 HOH A 80 531 531 HOH HOH . 
D 4 HOH A 81 534 534 HOH HOH . 
D 4 HOH A 82 543 543 HOH HOH . 
D 4 HOH A 83 545 545 HOH HOH . 
D 4 HOH A 84 550 550 HOH HOH . 
D 4 HOH A 85 551 551 HOH HOH . 
D 4 HOH A 86 556 556 HOH HOH . 
D 4 HOH A 87 557 557 HOH HOH . 
D 4 HOH A 88 567 567 HOH HOH . 
D 4 HOH A 89 574 574 HOH HOH . 
D 4 HOH A 90 579 579 HOH HOH . 
D 4 HOH A 91 584 584 HOH HOH . 
D 4 HOH A 92 586 586 HOH HOH . 
D 4 HOH A 93 588 588 HOH HOH . 
D 4 HOH A 94 593 593 HOH HOH . 
D 4 HOH A 95 596 596 HOH HOH . 
D 4 HOH A 96 597 597 HOH HOH . 
D 4 HOH A 97 600 600 HOH HOH . 
D 4 HOH A 98 607 607 HOH HOH . 
D 4 HOH A 99 608 608 HOH HOH . 
D 4 HOH A 100 610 610 HOH HOH . 
D 4 HOH A 101 632 632 HOH HOH . 
D 4 HOH A 102 634 634 HOH HOH . 
D 4 HOH A 103 640 640 HOH HOH . 
D 4 HOH A 104 641 641 HOH HOH . 
D 4 HOH A 105 642 642 HOH HOH . 
D 4 HOH A 106 643 643 HOH HOH . 
D 4 HOH A 107 649 649 HOH HOH . 
D 4 HOH A 108 652 652 HOH HOH . 
D 4 HOH A 109 653 653 HOH HOH . 
D 4 HOH A 110 655 655 HOH HOH . 
D 4 HOH A 111 658 658 HOH HOH . 
D 4 HOH A 112 661 661 HOH HOH . 
D 4 HOH A 113 664 664 HOH HOH . 
D 4 HOH A 114 665 665 HOH HOH . 
D 4 HOH A 115 669 669 HOH HOH . 
D 4 HOH A 116 672 672 HOH HOH . 
D 4 HOH A 117 677 677 HOH HOH . 
D 4 HOH A 118 678 678 HOH HOH . 
D 4 HOH A 119 683 683 HOH HOH . 
D 4 HOH A 120 687 687 HOH HOH . 
D 4 HOH A 121 691 691 HOH HOH . 
D 4 HOH A 122 696 696 HOH HOH . 
D 4 HOH A 123 698 698 HOH HOH . 
D 4 HOH A 124 702 702 HOH HOH . 
D 4 HOH A 125 706 706 HOH HOH . 
D 4 HOH A 126 722 722 HOH HOH . 
D 4 HOH A 127 723 723 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . C 3 29.544 35.695 10.485 1 50.33 ? PG ANP 300 A 1 
HETATM 2 O O1G ANP . . . C 3 30.783 35.238 9.753 1 50.2 ? O1G ANP 300 A 1 
HETATM 3 O O2G ANP . . . C 3 28.799 36.77 9.734 1 50.1 ? O2G ANP 300 A 1 
HETATM 4 O O3G ANP . . . C 3 29.739 35.992 11.947 1 50.09 ? O3G ANP 300 A 1 
HETATM 5 P PB ANP . . . C 3 28.699 32.884 11.174 1 46.95 ? PB ANP 300 A 1 
HETATM 6 O O1B ANP . . . C 3 29.914 32.251 10.567 1 46.38 ? O1B ANP 300 A 1 
HETATM 7 O O2B ANP . . . C 3 28.6 33.015 12.643 1 46.49 ? O2B ANP 300 A 1 
HETATM 8 N N3B ANP . . . C 3 28.577 34.386 10.518 1 48.29 ? N3B ANP 300 A 1 
HETATM 9 P PA ANP . . . C 3 26.98 30.688 10.942 1 40.62 ? PA ANP 300 A 1 
HETATM 10 O O1A ANP . . . C 3 27.012 30.034 9.631 1 41.25 ? O1A ANP 300 A 1 
HETATM 11 O O2A ANP . . . C 3 27.73 30.115 12.043 1 41.08 ? O2A ANP 300 A 1 
HETATM 12 O O3A ANP . . . C 3 27.479 32.098 10.67 1 44 ? O3A ANP 300 A 1 
HETATM 13 O O5' ANP . . . C 3 25.445 30.731 11.485 1 39.4 ? O5' ANP 300 A 1 
HETATM 14 C C5' ANP . . . C 3 25.091 31.48 12.678 1 36.66 ? C5' ANP 300 A 1 
HETATM 15 C C4' ANP . . . C 3 24.102 30.694 13.498 1 34.93 ? C4' ANP 300 A 1 
HETATM 16 O O4' ANP . . . C 3 22.959 30.395 12.651 1 33.98 ? O4' ANP 300 A 1 
HETATM 17 C C3' ANP . . . C 3 24.599 29.33 13.964 1 34.27 ? C3' ANP 300 A 1 
HETATM 18 O O3' ANP . . . C 3 25.594 29.288 15.004 1 33.71 ? O3' ANP 300 A 1 
HETATM 19 C C2' ANP . . . C 3 23.309 28.536 14.109 1 33.5 ? C2' ANP 300 A 1 
HETATM 20 O O2' ANP . . . C 3 22.667 28.832 15.328 1 33.36 ? O2' ANP 300 A 1 
HETATM 21 C C1' ANP . . . C 3 22.472 29.101 12.954 1 32.94 ? C1' ANP 300 A 1 
HETATM 22 N N9 ANP . . . C 3 22.562 28.294 11.743 1 31.79 ? N9 ANP 300 A 1 
HETATM 23 C C8 ANP . . . C 3 23.542 28.311 10.782 1 31.28 ? C8 ANP 300 A 1 
HETATM 24 N N7 ANP . . . C 3 23.349 27.448 9.817 1 30.7 ? N7 ANP 300 A 1 
HETATM 25 C C5 ANP . . . C 3 22.161 26.823 10.162 1 30.98 ? C5 ANP 300 A 1 
HETATM 26 C C6 ANP . . . C 3 21.409 25.803 9.542 1 31.02 ? C6 ANP 300 A 1 
HETATM 27 N N6 ANP . . . C 3 21.769 25.202 8.406 1 30.88 ? N6 ANP 300 A 1 
HETATM 28 N N1 ANP . . . C 3 20.261 25.416 10.141 1 31.12 ? N1 ANP 300 A 1 
HETATM 29 C C2 ANP . . . C 3 19.906 26.014 11.286 1 31.1 ? C2 ANP 300 A 1 
HETATM 30 N N3 ANP . . . C 3 20.529 26.974 11.967 1 31.03 ? N3 ANP 300 A 1 
HETATM 31 C C4 ANP . . . C 3 21.662 27.339 11.343 1 31.34 ? C4 ANP 300 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#