data_1JLA # _model_server_result.job_id DCna9kkqh6iNUmW3bBbpQw _model_server_result.datetime_utc '2024-10-26 12:21:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1JLA # _exptl.entry_id 1JLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 364.438 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-BENZYL-1-BENZYLOXYMETHYL-5-ISOPROPYL URACIL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JLA _cell.length_a 140.4 _cell.length_b 111.2 _cell.length_c 73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 279 A LEU 279 1_555 A N CSD 280 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C CSD 280 A CSD 280 1_555 A N LYS 281 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C22 H24 N2 O3' _chem_comp.formula_weight 364.438 _chem_comp.id TNK _chem_comp.mon_nstd_flag . _chem_comp.name '6-BENZYL-1-BENZYLOXYMETHYL-5-ISOPROPYL URACIL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1JLA _atom_sites.fract_transf_matrix[1][1] 0.007123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TNK A 1 999 999 TNK TNK . D 4 HOH A 1 1001 1001 HOH WAT . D 4 HOH A 2 1002 1002 HOH WAT . D 4 HOH A 3 1003 1003 HOH WAT . D 4 HOH A 4 1004 1004 HOH WAT . D 4 HOH A 5 1005 1005 HOH WAT . D 4 HOH A 6 1006 1006 HOH WAT . D 4 HOH A 7 1007 1007 HOH WAT . D 4 HOH A 8 1008 1008 HOH WAT . D 4 HOH A 9 1009 1009 HOH WAT . D 4 HOH A 10 1012 1012 HOH WAT . D 4 HOH A 11 1013 1013 HOH WAT . D 4 HOH A 12 1014 1014 HOH WAT . D 4 HOH A 13 1015 1015 HOH WAT . D 4 HOH A 14 1016 1016 HOH WAT . D 4 HOH A 15 1017 1017 HOH WAT . D 4 HOH A 16 1018 1018 HOH WAT . D 4 HOH A 17 1019 1019 HOH WAT . D 4 HOH A 18 1020 1020 HOH WAT . D 4 HOH A 19 1021 1021 HOH WAT . D 4 HOH A 20 1022 1022 HOH WAT . D 4 HOH A 21 1023 1023 HOH WAT . D 4 HOH A 22 1024 1024 HOH WAT . D 4 HOH A 23 1033 1033 HOH WAT . D 4 HOH A 24 1035 1035 HOH WAT . D 4 HOH A 25 1036 1036 HOH WAT . D 4 HOH A 26 1037 1037 HOH WAT . D 4 HOH A 27 1038 1038 HOH WAT . D 4 HOH A 28 1039 1039 HOH WAT . D 4 HOH A 29 1040 1040 HOH WAT . D 4 HOH A 30 1041 1041 HOH WAT . E 4 HOH B 1 1010 1010 HOH WAT . E 4 HOH B 2 1011 1011 HOH WAT . E 4 HOH B 3 1025 1025 HOH WAT . E 4 HOH B 4 1026 1026 HOH WAT . E 4 HOH B 5 1027 1027 HOH WAT . E 4 HOH B 6 1028 1028 HOH WAT . E 4 HOH B 7 1029 1029 HOH WAT . E 4 HOH B 8 1030 1030 HOH WAT . E 4 HOH B 9 1031 1031 HOH WAT . E 4 HOH B 10 1032 1032 HOH WAT . E 4 HOH B 11 1034 1034 HOH WAT . E 4 HOH B 12 1042 1042 HOH WAT . E 4 HOH B 13 1043 1043 HOH WAT . E 4 HOH B 14 1044 1044 HOH WAT . E 4 HOH B 15 1045 1045 HOH WAT . E 4 HOH B 16 1046 1046 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TNK . . . C 3 -1.378 -34.46 27.005 1 44.98 ? C1 TNK 999 A 1 HETATM 2 C C2 TNK . . . C 3 -2.139 -33.802 27.985 1 47.46 ? C2 TNK 999 A 1 HETATM 3 C C3 TNK . . . C 3 -1.53 -32.826 28.816 1 51.33 ? C3 TNK 999 A 1 HETATM 4 C C4 TNK . . . C 3 -0.152 -32.513 28.654 1 48.55 ? C4 TNK 999 A 1 HETATM 5 C C5 TNK . . . C 3 0.607 -33.172 27.666 1 49.48 ? C5 TNK 999 A 1 HETATM 6 C C6 TNK . . . C 3 -0.012 -34.143 26.843 1 51.13 ? C6 TNK 999 A 1 HETATM 7 C C7 TNK . . . C 3 -1.826 -35.676 24.679 1 40.11 ? C7 TNK 999 A 1 HETATM 8 N N8 TNK . . . C 3 -2.601 -34.807 23.874 1 36.52 ? N8 TNK 999 A 1 HETATM 9 C C9 TNK . . . C 3 -2.522 -34.843 22.462 1 36.75 ? C9 TNK 999 A 1 HETATM 10 O O9 TNK . . . C 3 -3.202 -34.135 21.722 1 33.35 ? O9 TNK 999 A 1 HETATM 11 N N10 TNK . . . C 3 -1.643 -35.766 21.926 1 45.65 ? N10 TNK 999 A 1 HETATM 12 C C11 TNK . . . C 3 -0.841 -36.659 22.631 1 43.85 ? C11 TNK 999 A 1 HETATM 13 O O11 TNK . . . C 3 -0.097 -37.424 22.02 1 54.41 ? O11 TNK 999 A 1 HETATM 14 C C12 TNK . . . C 3 -0.948 -36.612 24.076 1 40.05 ? C12 TNK 999 A 1 HETATM 15 C C13 TNK . . . C 3 -2.023 -35.58 26.203 1 40.42 ? C13 TNK 999 A 1 HETATM 16 C C14 TNK . . . C 3 -0.134 -37.707 24.795 1 45.08 ? C14 TNK 999 A 1 HETATM 17 C C15 TNK . . . C 3 -0.979 -38.784 25.502 1 45.74 ? C15 TNK 999 A 1 HETATM 18 C C16 TNK . . . C 3 1.059 -37.19 25.571 1 52.93 ? C16 TNK 999 A 1 HETATM 19 C C17 TNK . . . C 3 -3.595 -33.857 24.46 1 34.23 ? C17 TNK 999 A 1 HETATM 20 O O17 TNK . . . C 3 -4.872 -34.061 23.881 1 44.82 ? O17 TNK 999 A 1 HETATM 21 C C18 TNK . . . C 3 -5.915 -33.931 24.833 1 46.69 ? C18 TNK 999 A 1 HETATM 22 C C19 TNK . . . C 3 -7.052 -34.848 24.505 1 39.32 ? C19 TNK 999 A 1 HETATM 23 C C20 TNK . . . C 3 -6.953 -35.738 23.418 1 38.74 ? C20 TNK 999 A 1 HETATM 24 C C21 TNK . . . C 3 -7.97 -36.681 23.177 1 33.48 ? C21 TNK 999 A 1 HETATM 25 C C22 TNK . . . C 3 -9.093 -36.729 24.033 1 40.81 ? C22 TNK 999 A 1 HETATM 26 C C23 TNK . . . C 3 -9.189 -35.828 25.121 1 37.73 ? C23 TNK 999 A 1 HETATM 27 C C24 TNK . . . C 3 -8.164 -34.888 25.35 1 28.11 ? C24 TNK 999 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #