data_1JLA
#
_model_server_result.job_id            -upxZlmT6jA69JR5boukuA 
_model_server_result.datetime_utc      '2024-11-24 23:48:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jla 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":999}' 
#
_entry.id    1JLA 
#
_exptl.entry_id    1JLA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              364.438 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '6-BENZYL-1-BENZYLOXYMETHYL-5-ISOPROPYL URACIL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1JLA 
_cell.length_a            140.4 
_cell.length_b            111.2 
_cell.length_c            73 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JLA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 279 A LEU 279 1_555 A N CSD 280 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C CSD 280 A CSD 280 1_555 A N LYS 281 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C22 H24 N2 O3' 
_chem_comp.formula_weight    364.438 
_chem_comp.id                TNK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '6-BENZYL-1-BENZYLOXYMETHYL-5-ISOPROPYL URACIL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 TNK doub 321 n y 
C1 C6 TNK sing 322 n y 
C1 C13 TNK sing 323 n n 
C2 C3 TNK sing 324 n y 
C2 H2 TNK sing 325 n n 
C3 C4 TNK doub 326 n y 
C3 H3 TNK sing 327 n n 
C4 C5 TNK sing 328 n y 
C4 H4 TNK sing 329 n n 
C5 C6 TNK doub 330 n y 
C5 H5 TNK sing 331 n n 
C6 H6 TNK sing 332 n n 
C7 N8 TNK sing 333 n n 
C7 C12 TNK doub 334 n n 
C7 C13 TNK sing 335 n n 
N8 C9 TNK sing 336 n n 
N8 C17 TNK sing 337 n n 
C9 O9 TNK doub 338 n n 
C9 N10 TNK sing 339 n n 
N10 C11 TNK sing 340 n n 
N10 HN1 TNK sing 341 n n 
C11 O11 TNK doub 342 n n 
C11 C12 TNK sing 343 n n 
C12 C14 TNK sing 344 n n 
C13 H131 TNK sing 345 n n 
C13 H132 TNK sing 346 n n 
C14 C15 TNK sing 347 n n 
C14 C16 TNK sing 348 n n 
C14 H14 TNK sing 349 n n 
C15 H151 TNK sing 350 n n 
C15 H152 TNK sing 351 n n 
C15 H153 TNK sing 352 n n 
C16 H161 TNK sing 353 n n 
C16 H162 TNK sing 354 n n 
C16 H163 TNK sing 355 n n 
C17 O17 TNK sing 356 n n 
C17 H171 TNK sing 357 n n 
C17 H172 TNK sing 358 n n 
O17 C18 TNK sing 359 n n 
C18 C19 TNK sing 360 n n 
C18 H181 TNK sing 361 n n 
C18 H182 TNK sing 362 n n 
C19 C20 TNK doub 363 n y 
C19 C24 TNK sing 364 n y 
C20 C21 TNK sing 365 n y 
C20 H20 TNK sing 366 n n 
C21 C22 TNK doub 367 n y 
C21 H21 TNK sing 368 n n 
C22 C23 TNK sing 369 n y 
C22 H22 TNK sing 370 n n 
C23 C24 TNK doub 371 n y 
C23 H23 TNK sing 372 n n 
C24 H24 TNK sing 373 n n 
#
_atom_sites.entry_id                     1JLA 
_atom_sites.fract_transf_matrix[1][1]    0.007123 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008993 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013699 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 TNK A 1 999 999 TNK TNK . 
D 4 HOH A 1 1001 1001 HOH WAT . 
D 4 HOH A 2 1002 1002 HOH WAT . 
D 4 HOH A 3 1003 1003 HOH WAT . 
D 4 HOH A 4 1004 1004 HOH WAT . 
D 4 HOH A 5 1005 1005 HOH WAT . 
D 4 HOH A 6 1006 1006 HOH WAT . 
D 4 HOH A 7 1007 1007 HOH WAT . 
D 4 HOH A 8 1008 1008 HOH WAT . 
D 4 HOH A 9 1009 1009 HOH WAT . 
D 4 HOH A 10 1012 1012 HOH WAT . 
D 4 HOH A 11 1013 1013 HOH WAT . 
D 4 HOH A 12 1014 1014 HOH WAT . 
D 4 HOH A 13 1015 1015 HOH WAT . 
D 4 HOH A 14 1016 1016 HOH WAT . 
D 4 HOH A 15 1017 1017 HOH WAT . 
D 4 HOH A 16 1018 1018 HOH WAT . 
D 4 HOH A 17 1019 1019 HOH WAT . 
D 4 HOH A 18 1020 1020 HOH WAT . 
D 4 HOH A 19 1021 1021 HOH WAT . 
D 4 HOH A 20 1022 1022 HOH WAT . 
D 4 HOH A 21 1023 1023 HOH WAT . 
D 4 HOH A 22 1024 1024 HOH WAT . 
D 4 HOH A 23 1033 1033 HOH WAT . 
D 4 HOH A 24 1035 1035 HOH WAT . 
D 4 HOH A 25 1036 1036 HOH WAT . 
D 4 HOH A 26 1037 1037 HOH WAT . 
D 4 HOH A 27 1038 1038 HOH WAT . 
D 4 HOH A 28 1039 1039 HOH WAT . 
D 4 HOH A 29 1040 1040 HOH WAT . 
D 4 HOH A 30 1041 1041 HOH WAT . 
E 4 HOH B 1 1010 1010 HOH WAT . 
E 4 HOH B 2 1011 1011 HOH WAT . 
E 4 HOH B 3 1025 1025 HOH WAT . 
E 4 HOH B 4 1026 1026 HOH WAT . 
E 4 HOH B 5 1027 1027 HOH WAT . 
E 4 HOH B 6 1028 1028 HOH WAT . 
E 4 HOH B 7 1029 1029 HOH WAT . 
E 4 HOH B 8 1030 1030 HOH WAT . 
E 4 HOH B 9 1031 1031 HOH WAT . 
E 4 HOH B 10 1032 1032 HOH WAT . 
E 4 HOH B 11 1034 1034 HOH WAT . 
E 4 HOH B 12 1042 1042 HOH WAT . 
E 4 HOH B 13 1043 1043 HOH WAT . 
E 4 HOH B 14 1044 1044 HOH WAT . 
E 4 HOH B 15 1045 1045 HOH WAT . 
E 4 HOH B 16 1046 1046 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TNK . . . C 3 -1.378 -34.46 27.005 1 44.98 ? C1 TNK 999 A 1 
HETATM 2 C C2 TNK . . . C 3 -2.139 -33.802 27.985 1 47.46 ? C2 TNK 999 A 1 
HETATM 3 C C3 TNK . . . C 3 -1.53 -32.826 28.816 1 51.33 ? C3 TNK 999 A 1 
HETATM 4 C C4 TNK . . . C 3 -0.152 -32.513 28.654 1 48.55 ? C4 TNK 999 A 1 
HETATM 5 C C5 TNK . . . C 3 0.607 -33.172 27.666 1 49.48 ? C5 TNK 999 A 1 
HETATM 6 C C6 TNK . . . C 3 -0.012 -34.143 26.843 1 51.13 ? C6 TNK 999 A 1 
HETATM 7 C C7 TNK . . . C 3 -1.826 -35.676 24.679 1 40.11 ? C7 TNK 999 A 1 
HETATM 8 N N8 TNK . . . C 3 -2.601 -34.807 23.874 1 36.52 ? N8 TNK 999 A 1 
HETATM 9 C C9 TNK . . . C 3 -2.522 -34.843 22.462 1 36.75 ? C9 TNK 999 A 1 
HETATM 10 O O9 TNK . . . C 3 -3.202 -34.135 21.722 1 33.35 ? O9 TNK 999 A 1 
HETATM 11 N N10 TNK . . . C 3 -1.643 -35.766 21.926 1 45.65 ? N10 TNK 999 A 1 
HETATM 12 C C11 TNK . . . C 3 -0.841 -36.659 22.631 1 43.85 ? C11 TNK 999 A 1 
HETATM 13 O O11 TNK . . . C 3 -0.097 -37.424 22.02 1 54.41 ? O11 TNK 999 A 1 
HETATM 14 C C12 TNK . . . C 3 -0.948 -36.612 24.076 1 40.05 ? C12 TNK 999 A 1 
HETATM 15 C C13 TNK . . . C 3 -2.023 -35.58 26.203 1 40.42 ? C13 TNK 999 A 1 
HETATM 16 C C14 TNK . . . C 3 -0.134 -37.707 24.795 1 45.08 ? C14 TNK 999 A 1 
HETATM 17 C C15 TNK . . . C 3 -0.979 -38.784 25.502 1 45.74 ? C15 TNK 999 A 1 
HETATM 18 C C16 TNK . . . C 3 1.059 -37.19 25.571 1 52.93 ? C16 TNK 999 A 1 
HETATM 19 C C17 TNK . . . C 3 -3.595 -33.857 24.46 1 34.23 ? C17 TNK 999 A 1 
HETATM 20 O O17 TNK . . . C 3 -4.872 -34.061 23.881 1 44.82 ? O17 TNK 999 A 1 
HETATM 21 C C18 TNK . . . C 3 -5.915 -33.931 24.833 1 46.69 ? C18 TNK 999 A 1 
HETATM 22 C C19 TNK . . . C 3 -7.052 -34.848 24.505 1 39.32 ? C19 TNK 999 A 1 
HETATM 23 C C20 TNK . . . C 3 -6.953 -35.738 23.418 1 38.74 ? C20 TNK 999 A 1 
HETATM 24 C C21 TNK . . . C 3 -7.97 -36.681 23.177 1 33.48 ? C21 TNK 999 A 1 
HETATM 25 C C22 TNK . . . C 3 -9.093 -36.729 24.033 1 40.81 ? C22 TNK 999 A 1 
HETATM 26 C C23 TNK . . . C 3 -9.189 -35.828 25.121 1 37.73 ? C23 TNK 999 A 1 
HETATM 27 C C24 TNK . . . C 3 -8.164 -34.888 25.35 1 28.11 ? C24 TNK 999 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#