data_1JLB # _model_server_result.job_id cJMjaFEO7d4GjwsB7KsVgg _model_server_result.datetime_utc '2025-02-28 13:29:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jlb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1JLB # _exptl.entry_id 1JLB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.298 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JLB _cell.length_a 141.2 _cell.length_b 110.3 _cell.length_c 73.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JLB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 279 A LEU 279 1_555 A N CSD 280 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C CSD 280 A CSD 280 1_555 A N LYS 281 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? # _chem_comp.formula 'C15 H14 N4 O' _chem_comp.formula_weight 266.298 _chem_comp.id NVP _chem_comp.mon_nstd_flag . _chem_comp.name "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA NVP sing 250 n n N1 C2 NVP sing 251 n n N1 C15 NVP sing 252 n n CA CB NVP sing 253 n n CA CC NVP sing 254 n n CA HCA NVP sing 255 n n CB CC NVP sing 256 n n CB HCB1 NVP sing 257 n n CB HCB2 NVP sing 258 n n CC HCC1 NVP sing 259 n n CC HCC2 NVP sing 260 n n N3 C4 NVP doub 261 n y N3 C2 NVP sing 262 n y C4 C5 NVP sing 263 n y C4 HC4 NVP sing 264 n n C5 C6 NVP doub 265 n y C5 HC5 NVP sing 266 n n C6 CD NVP sing 267 n n C6 C7 NVP sing 268 n y CD HCD1 NVP sing 269 n n CD HCD2 NVP sing 270 n n CD HCD3 NVP sing 271 n n C2 C7 NVP doub 272 n y C7 N8 NVP sing 273 n n N8 C9 NVP sing 274 n n N8 HN8 NVP sing 275 n n C9 OE NVP doub 276 n n C9 C10 NVP sing 277 n n C10 C15 NVP doub 278 n y C10 C11 NVP sing 279 n y C15 N14 NVP sing 280 n y C11 C12 NVP doub 281 n y C11 H11 NVP sing 282 n n C12 C13 NVP sing 283 n y C12 H12 NVP sing 284 n n C13 N14 NVP doub 285 n y C13 H13 NVP sing 286 n n # _atom_sites.entry_id 1JLB _atom_sites.fract_transf_matrix[1][1] 0.007082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id NVP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 999 _pdbx_nonpoly_scheme.auth_seq_num 999 _pdbx_nonpoly_scheme.pdb_mon_id NVP _pdbx_nonpoly_scheme.auth_mon_id NVP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NVP . . . C 3 -0.596 -35.859 24.816 1 72.62 ? N1 NVP 999 A 1 HETATM 2 C CA NVP . . . C 3 -0.027 -37.126 24.302 1 61.78 ? CA NVP 999 A 1 HETATM 3 C CB NVP . . . C 3 0.625 -38.016 25.315 1 57.02 ? CB NVP 999 A 1 HETATM 4 C CC NVP . . . C 3 -0.724 -38.361 24.76 1 63.58 ? CC NVP 999 A 1 HETATM 5 N N3 NVP . . . C 3 1.727 -35.065 25.154 1 96.74 ? N3 NVP 999 A 1 HETATM 6 C C4 NVP . . . C 3 2.633 -34.214 25.786 1 88.85 ? C4 NVP 999 A 1 HETATM 7 C C5 NVP . . . C 3 2.214 -33.24 26.791 1 85.42 ? C5 NVP 999 A 1 HETATM 8 C C6 NVP . . . C 3 0.81 -33.168 27.111 1 87.03 ? C6 NVP 999 A 1 HETATM 9 C CD NVP . . . C 3 0.294 -32.176 28.153 1 84.3 ? CD NVP 999 A 1 HETATM 10 C C2 NVP . . . C 3 0.38 -34.982 25.478 1 86.91 ? C2 NVP 999 A 1 HETATM 11 C C7 NVP . . . C 3 -0.121 -34.046 26.442 1 89.67 ? C7 NVP 999 A 1 HETATM 12 N N8 NVP . . . C 3 -1.546 -33.941 26.725 1 83 ? N8 NVP 999 A 1 HETATM 13 C C9 NVP . . . C 3 -2.646 -33.977 25.936 1 75.99 ? C9 NVP 999 A 1 HETATM 14 O OE NVP . . . C 3 -3.806 -33.836 26.411 1 80.54 ? OE NVP 999 A 1 HETATM 15 C C10 NVP . . . C 3 -2.492 -34.162 24.412 1 74.91 ? C10 NVP 999 A 1 HETATM 16 C C15 NVP . . . C 3 -1.554 -35.144 23.868 1 77.45 ? C15 NVP 999 A 1 HETATM 17 C C11 NVP . . . C 3 -3.354 -33.43 23.523 1 69.06 ? C11 NVP 999 A 1 HETATM 18 C C12 NVP . . . C 3 -3.278 -33.677 22.113 1 69.14 ? C12 NVP 999 A 1 HETATM 19 C C13 NVP . . . C 3 -2.307 -34.688 21.644 1 73.96 ? C13 NVP 999 A 1 HETATM 20 N N14 NVP . . . C 3 -1.474 -35.397 22.508 1 77.91 ? N14 NVP 999 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #