data_1JLD # _model_server_result.job_id SS0IT2RAiOEpKr1KEghk-g _model_server_result.datetime_utc '2025-07-02 07:07:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jld # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 1JLD # _exptl.entry_id 1JLD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 661.831 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-tert-butyl-N~4~-(1-ethylpropyl)-N~1~-[(2R,3S)-2-hydroxy-4-phenyl-3-{[N-(quinolin-2-ylcarbonyl)-L-threonyl]amino}butyl]butanediamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JLD _cell.length_a 62.6 _cell.length_b 62.6 _cell.length_c 115.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JLD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H51 N5 O6' _chem_comp.formula_weight 661.831 _chem_comp.id 0PP _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-tert-butyl-N~4~-(1-ethylpropyl)-N~1~-[(2R,3S)-2-hydroxy-4-phenyl-3-{[N-(quinolin-2-ylcarbonyl)-L-threonyl]amino}butyl]butanediamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 0PP doub 1 n n C C2 0PP sing 2 n n N1 C2 0PP doub 3 n y N1 C8A 0PP sing 4 n y C2 C3 0PP sing 5 n y C3 C4 0PP doub 6 n y C3 H3 0PP sing 7 n n C4 C4A 0PP sing 8 n y C4 H4 0PP sing 9 n n C4A C5 0PP doub 10 n y C4A C8A 0PP sing 11 n y C5 C6 0PP sing 12 n y C5 H5 0PP sing 13 n n C6 C7 0PP doub 14 n y C6 H6 0PP sing 15 n n C7 C8 0PP sing 16 n y C7 H7 0PP sing 17 n n C8 C8A 0PP doub 18 n y C8 H8 0PP sing 19 n n N CA 0PP sing 20 n n N H 0PP sing 21 n n CA C1 0PP sing 22 n n CA CB 0PP sing 23 n n CA HA 0PP sing 24 n n C1 O1 0PP doub 25 n n CB OG1 0PP sing 26 n n CB CG2 0PP sing 27 n n CB HB 0PP sing 28 n n OG1 HG1 0PP sing 29 n n CG2 HG21 0PP sing 30 n n CG2 HG22 0PP sing 31 n n CG2 HG23 0PP sing 32 n n N2 CA1 0PP sing 33 n n N2 H1 0PP sing 34 n n CA1 C9 0PP sing 35 n n CA1 CB1 0PP sing 36 n n CA1 HA1 0PP sing 37 n n C9 OXT 0PP sing 38 n n C9 CM 0PP sing 39 n n C9 HC 0PP sing 40 n n OXT HOR 0PP sing 41 n n CB1 CG 0PP sing 42 n n CB1 HB2 0PP sing 43 n n CB1 HB3 0PP sing 44 n n CG CD1 0PP doub 45 n y CG CD2 0PP sing 46 n y CD1 CE1 0PP sing 47 n y CD1 HD1 0PP sing 48 n n CD2 CE2 0PP doub 49 n y CD2 HD2 0PP sing 50 n n CE1 CZ 0PP doub 51 n y CE1 HE1 0PP sing 52 n n CE2 CZ 0PP sing 53 n y CE2 HE2 0PP sing 54 n n CZ HZ 0PP sing 55 n n CM HM2 0PP sing 56 n n CM HM3 0PP sing 57 n n N' C' 0PP sing 58 n n N' "HN'2" 0PP sing 59 n n C' O' 0PP doub 60 n n C' C2' 0PP sing 61 n n C2' CT1 0PP sing 62 n n C2' C1' 0PP sing 63 n n C2' H2' 0PP sing 64 n n CT1 CT2 0PP sing 65 n n CT1 CT3 0PP sing 66 n n CT1 CT4 0PP sing 67 n n CT2 HT21 0PP sing 68 n n CT2 HT22 0PP sing 69 n n CT2 HT23 0PP sing 70 n n CT3 HT31 0PP sing 71 n n CT3 HT32 0PP sing 72 n n CT3 HT33 0PP sing 73 n n CT4 HT41 0PP sing 74 n n CT4 HT42 0PP sing 75 n n CT4 HT43 0PP sing 76 n n C1' CC 0PP sing 77 n n C1' "H1'1" 0PP sing 78 n n C1' "H1'2" 0PP sing 79 n n CC O2 0PP doub 80 n n CC N3 0PP sing 81 n n N3 C31 0PP sing 82 n n N3 HN 0PP sing 83 n n C31 C41 0PP sing 84 n n C31 C21 0PP sing 85 n n C31 H31 0PP sing 86 n n C41 C51 0PP sing 87 n n C41 H41 0PP sing 88 n n C41 H42 0PP sing 89 n n C51 H51 0PP sing 90 n n C51 H52 0PP sing 91 n n C51 H53 0PP sing 92 n n C21 C11 0PP sing 93 n n C21 H21 0PP sing 94 n n C21 H22 0PP sing 95 n n C11 H11 0PP sing 96 n n C11 H12 0PP sing 97 n n C11 H13 0PP sing 98 n n C N 0PP sing 99 n n C1 N2 0PP sing 100 n n CM N' 0PP sing 101 n n # _atom_sites.entry_id 1JLD _atom_sites.fract_transf_matrix[1][1] 0.015974 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0PP A 1 100 1 0PP QNC . D 3 HOH A 1 301 301 HOH HOH . D 3 HOH A 2 302 302 HOH HOH . D 3 HOH A 3 303 303 HOH HOH . D 3 HOH A 4 304 304 HOH HOH . D 3 HOH A 5 306 306 HOH HOH . D 3 HOH A 6 307 307 HOH HOH . D 3 HOH A 7 308 308 HOH HOH . E 3 HOH B 1 305 305 HOH HOH . E 3 HOH B 2 401 401 HOH HOH . E 3 HOH B 3 402 402 HOH HOH . E 3 HOH B 4 403 403 HOH HOH . E 3 HOH B 5 404 404 HOH HOH . E 3 HOH B 6 405 405 HOH HOH . E 3 HOH B 7 406 406 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 0PP . . . C 2 50.559 24.713 8.9 1 8.04 ? C 0PP 100 A 1 HETATM 2 O O 0PP . . . C 2 51.47 25.435 9.367 1 7.04 ? O 0PP 100 A 1 HETATM 3 N N1 0PP . . . C 2 48.171 24.252 8.624 1 9.14 ? N1 0PP 100 A 1 HETATM 4 C C2 0PP . . . C 2 49.178 25.063 9.014 1 9.5 ? C2 0PP 100 A 1 HETATM 5 C C3 0PP . . . C 2 48.795 26.264 9.601 1 12.07 ? C3 0PP 100 A 1 HETATM 6 C C4 0PP . . . C 2 47.471 26.591 9.786 1 12.13 ? C4 0PP 100 A 1 HETATM 7 C C5 0PP . . . C 2 45.134 25.966 9.605 1 13.64 ? C5 0PP 100 A 1 HETATM 8 C C6 0PP . . . C 2 44.178 25.033 9.207 1 13.17 ? C6 0PP 100 A 1 HETATM 9 C C7 0PP . . . C 2 44.567 23.859 8.583 1 11.99 ? C7 0PP 100 A 1 HETATM 10 C C8 0PP . . . C 2 45.912 23.579 8.423 1 10.9 ? C8 0PP 100 A 1 HETATM 11 C C4A 0PP . . . C 2 46.493 25.679 9.401 1 12.99 ? C4A 0PP 100 A 1 HETATM 12 C C8A 0PP . . . C 2 46.865 24.498 8.828 1 9.51 ? C8A 0PP 100 A 1 HETATM 13 N N 0PP . . . C 2 50.813 23.556 8.244 1 8.81 ? N 0PP 100 A 1 HETATM 14 C CA 0PP . . . C 2 52.003 22.8 7.857 1 9.24 ? CA 0PP 100 A 1 HETATM 15 C C1 0PP . . . C 2 51.901 22.586 6.382 1 11.06 ? C1 0PP 100 A 1 HETATM 16 O O1 0PP . . . C 2 51.566 21.523 5.878 1 8.9 ? O1 0PP 100 A 1 HETATM 17 C CB 0PP . . . C 2 52.294 21.503 8.699 1 9.18 ? CB 0PP 100 A 1 HETATM 18 O OG1 0PP . . . C 2 52.263 21.783 10.083 1 12.97 ? OG1 0PP 100 A 1 HETATM 19 C CG2 0PP . . . C 2 53.666 20.932 8.42 1 3.23 ? CG2 0PP 100 A 1 HETATM 20 N N2 0PP . . . C 2 52.126 23.69 5.68 1 15.45 ? N2 0PP 100 A 1 HETATM 21 C CA1 0PP . . . C 2 51.953 23.736 4.249 1 13.17 ? CA1 0PP 100 A 1 HETATM 22 C C9 0PP . . . C 2 53.178 23.242 3.481 1 13.86 ? C9 0PP 100 A 1 HETATM 23 O OXT 0PP . . . C 2 54.282 24.07 3.758 1 9.47 ? OXT 0PP 100 A 1 HETATM 24 C CB1 0PP . . . C 2 51.48 25.147 3.909 1 11.35 ? CB1 0PP 100 A 1 HETATM 25 C CG 0PP . . . C 2 50.2 25.494 4.609 1 12.38 ? CG 0PP 100 A 1 HETATM 26 C CD1 0PP . . . C 2 49.014 24.824 4.306 1 15.04 ? CD1 0PP 100 A 1 HETATM 27 C CD2 0PP . . . C 2 50.155 26.484 5.593 1 9.93 ? CD2 0PP 100 A 1 HETATM 28 C CE1 0PP . . . C 2 47.818 25.167 4.952 1 14.84 ? CE1 0PP 100 A 1 HETATM 29 C CE2 0PP . . . C 2 48.975 26.802 6.271 1 9.78 ? CE2 0PP 100 A 1 HETATM 30 C CZ 0PP . . . C 2 47.79 26.153 5.94 1 10.54 ? CZ 0PP 100 A 1 HETATM 31 C CM 0PP . . . C 2 53.002 23.24 1.974 1 12.73 ? CM 0PP 100 A 1 HETATM 32 N N' 0PP . . . C 2 53.816 22.194 1.372 1 11.33 ? N' 0PP 100 A 1 HETATM 33 C C' 0PP . . . C 2 53.331 21.016 1.039 1 13.26 ? C' 0PP 100 A 1 HETATM 34 O O' 0PP . . . C 2 52.173 20.678 1.217 1 18.05 ? O' 0PP 100 A 1 HETATM 35 C C2' 0PP . . . C 2 54.353 20.075 0.412 1 19.1 ? C2' 0PP 100 A 1 HETATM 36 C CT1 0PP . . . C 2 55.015 19.014 1.374 1 19.01 ? CT1 0PP 100 A 1 HETATM 37 C CT2 0PP . . . C 2 54.118 17.819 1.687 1 16.98 ? CT2 0PP 100 A 1 HETATM 38 C CT3 0PP . . . C 2 56.229 18.48 0.627 1 19.78 ? CT3 0PP 100 A 1 HETATM 39 C CT4 0PP . . . C 2 55.395 19.696 2.677 1 16.5 ? CT4 0PP 100 A 1 HETATM 40 C C1' 0PP . . . C 2 53.768 19.53 -0.907 1 16.34 ? C1' 0PP 100 A 1 HETATM 41 C CC 0PP . . . C 2 53.507 20.61 -1.939 1 15.03 ? CC 0PP 100 A 1 HETATM 42 O O2 0PP . . . C 2 54.462 21.352 -2.557 1 11.26 ? O2 0PP 100 A 1 HETATM 43 N N3 0PP . . . C 2 52.254 20.878 -2.326 1 15.9 ? N3 0PP 100 A 1 HETATM 44 C C31 0PP . . . C 2 51.915 21.864 -3.312 1 15.87 ? C31 0PP 100 A 1 HETATM 45 C C41 0PP . . . C 2 51.343 21.173 -4.54 1 19.57 ? C41 0PP 100 A 1 HETATM 46 C C51 0PP . . . C 2 52.092 19.88 -4.972 1 22.72 ? C51 0PP 100 A 1 HETATM 47 C C21 0PP . . . C 2 50.82 22.768 -2.78 1 15.73 ? C21 0PP 100 A 1 HETATM 48 C C11 0PP . . . C 2 51.174 23.617 -1.527 1 12.52 ? C11 0PP 100 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #