data_1JLF # _model_server_result.job_id uZrdMsLUd-yc2-XaYIK25Q _model_server_result.datetime_utc '2024-11-14 18:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jlf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1JLF # _exptl.entry_id 1JLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.298 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JLF _cell.length_a 137.3 _cell.length_b 109.2 _cell.length_c 72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 279 A LEU 279 1_555 A N CSD 280 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C CSD 280 A CSD 280 1_555 A N LYS 281 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C15 H14 N4 O' _chem_comp.formula_weight 266.298 _chem_comp.id NVP _chem_comp.mon_nstd_flag . _chem_comp.name "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE' # _atom_sites.entry_id 1JLF _atom_sites.fract_transf_matrix[1][1] 0.007283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NVP A 1 999 999 NVP NVP . D 4 HOH A 1 1001 1001 HOH WAT . D 4 HOH A 2 1002 1002 HOH WAT . D 4 HOH A 3 1004 1004 HOH WAT . D 4 HOH A 4 1005 1005 HOH WAT . D 4 HOH A 5 1006 1006 HOH WAT . D 4 HOH A 6 1007 1007 HOH WAT . D 4 HOH A 7 1008 1008 HOH WAT . D 4 HOH A 8 1009 1009 HOH WAT . D 4 HOH A 9 1010 1010 HOH WAT . D 4 HOH A 10 1011 1011 HOH WAT . D 4 HOH A 11 1012 1012 HOH WAT . D 4 HOH A 12 1013 1013 HOH WAT . D 4 HOH A 13 1014 1014 HOH WAT . D 4 HOH A 14 1015 1015 HOH WAT . D 4 HOH A 15 1026 1026 HOH WAT . D 4 HOH A 16 1027 1027 HOH WAT . D 4 HOH A 17 1028 1028 HOH WAT . D 4 HOH A 18 1029 1029 HOH WAT . D 4 HOH A 19 1030 1030 HOH WAT . D 4 HOH A 20 1031 1031 HOH WAT . D 4 HOH A 21 1032 1032 HOH WAT . D 4 HOH A 22 1033 1033 HOH WAT . D 4 HOH A 23 1034 1034 HOH WAT . D 4 HOH A 24 1035 1035 HOH WAT . D 4 HOH A 25 1036 1036 HOH WAT . D 4 HOH A 26 1037 1037 HOH WAT . D 4 HOH A 27 1038 1038 HOH WAT . D 4 HOH A 28 1039 1039 HOH WAT . D 4 HOH A 29 1040 1040 HOH WAT . D 4 HOH A 30 1041 1041 HOH WAT . D 4 HOH A 31 1042 1042 HOH WAT . D 4 HOH A 32 1043 1043 HOH WAT . D 4 HOH A 33 1045 1045 HOH WAT . D 4 HOH A 34 1046 1046 HOH WAT . E 4 HOH B 1 1003 1003 HOH WAT . E 4 HOH B 2 1016 1016 HOH WAT . E 4 HOH B 3 1017 1017 HOH WAT . E 4 HOH B 4 1018 1018 HOH WAT . E 4 HOH B 5 1019 1019 HOH WAT . E 4 HOH B 6 1020 1020 HOH WAT . E 4 HOH B 7 1021 1021 HOH WAT . E 4 HOH B 8 1022 1022 HOH WAT . E 4 HOH B 9 1023 1023 HOH WAT . E 4 HOH B 10 1024 1024 HOH WAT . E 4 HOH B 11 1025 1025 HOH WAT . E 4 HOH B 12 1044 1044 HOH WAT . E 4 HOH B 13 1047 1047 HOH WAT . E 4 HOH B 14 1048 1048 HOH WAT . E 4 HOH B 15 1049 1049 HOH WAT . E 4 HOH B 16 1050 1050 HOH WAT . E 4 HOH B 17 1051 1051 HOH WAT . E 4 HOH B 18 1052 1052 HOH WAT . E 4 HOH B 19 1053 1053 HOH WAT . E 4 HOH B 20 1054 1054 HOH WAT . E 4 HOH B 21 1055 1055 HOH WAT . E 4 HOH B 22 1056 1056 HOH WAT . E 4 HOH B 23 1057 1057 HOH WAT . E 4 HOH B 24 1058 1058 HOH WAT . E 4 HOH B 25 1059 1059 HOH WAT . E 4 HOH B 26 1060 1060 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NVP . . . C 3 -0.944 -35.394 24.474 1 90.83 ? N1 NVP 999 A 1 HETATM 2 C CA NVP . . . C 3 -0.295 -36.673 24.022 1 86.41 ? CA NVP 999 A 1 HETATM 3 C CB NVP . . . C 3 -0.442 -37.853 24.909 1 80.16 ? CB NVP 999 A 1 HETATM 4 C CC NVP . . . C 3 -1.18 -37.802 23.62 1 87.84 ? CC NVP 999 A 1 HETATM 5 N N3 NVP . . . C 3 1.277 -34.567 25.032 1 111.29 ? N3 NVP 999 A 1 HETATM 6 C C4 NVP . . . C 3 2.089 -33.785 25.805 1 102.47 ? C4 NVP 999 A 1 HETATM 7 C C5 NVP . . . C 3 1.579 -32.907 26.806 1 101.59 ? C5 NVP 999 A 1 HETATM 8 C C6 NVP . . . C 3 0.192 -32.844 26.994 1 112.11 ? C6 NVP 999 A 1 HETATM 9 C CD NVP . . . C 3 -0.383 -31.947 28.063 1 101.31 ? CD NVP 999 A 1 HETATM 10 C C2 NVP . . . C 3 -0.07 -34.507 25.223 1 109.99 ? C2 NVP 999 A 1 HETATM 11 C C7 NVP . . . C 3 -0.657 -33.641 26.181 1 116.88 ? C7 NVP 999 A 1 HETATM 12 N N8 NVP . . . C 3 -2.091 -33.531 26.297 1 110.92 ? N8 NVP 999 A 1 HETATM 13 C C9 NVP . . . C 3 -3.105 -33.596 25.417 1 101.3 ? C9 NVP 999 A 1 HETATM 14 O OE NVP . . . C 3 -4.274 -33.433 25.792 1 99.39 ? OE NVP 999 A 1 HETATM 15 C C10 NVP . . . C 3 -2.839 -33.864 23.921 1 96.6 ? C10 NVP 999 A 1 HETATM 16 C C15 NVP . . . C 3 -1.793 -34.728 23.475 1 99.53 ? C15 NVP 999 A 1 HETATM 17 C C11 NVP . . . C 3 -3.673 -33.276 22.957 1 89.09 ? C11 NVP 999 A 1 HETATM 18 C C12 NVP . . . C 3 -3.462 -33.554 21.588 1 83.8 ? C12 NVP 999 A 1 HETATM 19 C C13 NVP . . . C 3 -2.405 -34.414 21.227 1 88.86 ? C13 NVP 999 A 1 HETATM 20 N N14 NVP . . . C 3 -1.588 -34.989 22.152 1 98.33 ? N14 NVP 999 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #