data_1JLL # _model_server_result.job_id oN66F_loBwhZNDAfsEcKjQ _model_server_result.datetime_utc '2024-12-02 10:35:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1904}' # _entry.id 1JLL # _exptl.entry_id 1JLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1JLL _cell.length_a 97.06 _cell.length_b 97.06 _cell.length_c 389.6 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,O,P 1 1,2 C,D,J,K,L,M,N,Q,R 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 97.4 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N ? 4 K N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 325 B CYS 325 1_555 I S1P COA . B COA 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale2 D SG CYS 325 E CYS 325 1_555 N S1P COA . E COA 1904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 1JLL _atom_sites.fract_transf_matrix[1][1] 0.010303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PO4 A 1 1600 600 PO4 PO4 . F 4 COA A 1 1300 300 COA COA . G 5 SO4 B 1 1400 400 SO4 SO4 . H 5 SO4 B 1 1500 500 SO4 SO4 . I 4 COA B 1 1903 903 COA COA . J 3 PO4 D 1 1601 601 PO4 PO4 . K 4 COA D 1 1301 300 COA COA . L 5 SO4 E 1 1401 401 SO4 SO4 . M 5 SO4 E 1 1501 501 SO4 SO4 . N 4 COA E 1 1904 904 COA COA . O 6 HOH A 1 1601 8 HOH HOH . O 6 HOH A 2 1602 10 HOH HOH . O 6 HOH A 3 1603 11 HOH HOH . O 6 HOH A 4 1604 13 HOH HOH . O 6 HOH A 5 1605 14 HOH HOH . O 6 HOH A 6 1606 18 HOH HOH . O 6 HOH A 7 1607 22 HOH HOH . O 6 HOH A 8 1608 24 HOH HOH . O 6 HOH A 9 1609 25 HOH HOH . O 6 HOH A 10 1610 28 HOH HOH . O 6 HOH A 11 1611 31 HOH HOH . O 6 HOH A 12 1612 33 HOH HOH . O 6 HOH A 13 1613 36 HOH HOH . O 6 HOH A 14 1614 41 HOH HOH . O 6 HOH A 15 1615 42 HOH HOH . O 6 HOH A 16 1616 45 HOH HOH . O 6 HOH A 17 1617 51 HOH HOH . O 6 HOH A 18 1618 52 HOH HOH . O 6 HOH A 19 1619 56 HOH HOH . O 6 HOH A 20 1620 60 HOH HOH . O 6 HOH A 21 1621 62 HOH HOH . O 6 HOH A 22 1622 70 HOH HOH . O 6 HOH A 23 1623 72 HOH HOH . O 6 HOH A 24 1624 73 HOH HOH . O 6 HOH A 25 1625 75 HOH HOH . O 6 HOH A 26 1626 77 HOH HOH . O 6 HOH A 27 1627 81 HOH HOH . O 6 HOH A 28 1628 86 HOH HOH . O 6 HOH A 29 1629 94 HOH HOH . O 6 HOH A 30 1630 107 HOH HOH . O 6 HOH A 31 1631 108 HOH HOH . O 6 HOH A 32 1632 121 HOH HOH . O 6 HOH A 33 1633 122 HOH HOH . O 6 HOH A 34 1634 123 HOH HOH . O 6 HOH A 35 1635 125 HOH HOH . O 6 HOH A 36 1636 132 HOH HOH . O 6 HOH A 37 1637 135 HOH HOH . O 6 HOH A 38 1638 136 HOH HOH . O 6 HOH A 39 1639 149 HOH HOH . O 6 HOH A 40 1640 152 HOH HOH . O 6 HOH A 41 1641 154 HOH HOH . O 6 HOH A 42 1642 157 HOH HOH . O 6 HOH A 43 1643 160 HOH HOH . O 6 HOH A 44 1644 164 HOH HOH . O 6 HOH A 45 1645 165 HOH HOH . O 6 HOH A 46 1646 167 HOH HOH . O 6 HOH A 47 1647 169 HOH HOH . O 6 HOH A 48 1648 170 HOH HOH . O 6 HOH A 49 1649 175 HOH HOH . O 6 HOH A 50 1650 179 HOH HOH . O 6 HOH A 51 1651 187 HOH HOH . O 6 HOH A 52 1652 188 HOH HOH . O 6 HOH A 53 1653 190 HOH HOH . O 6 HOH A 54 1654 196 HOH HOH . O 6 HOH A 55 1655 197 HOH HOH . O 6 HOH A 56 1656 198 HOH HOH . O 6 HOH A 57 1657 199 HOH HOH . P 6 HOH B 1 1904 1 HOH HOH . P 6 HOH B 2 1905 2 HOH HOH . P 6 HOH B 3 1906 3 HOH HOH . P 6 HOH B 4 1907 5 HOH HOH . P 6 HOH B 5 1908 6 HOH HOH . P 6 HOH B 6 1909 21 HOH HOH . P 6 HOH B 7 1910 27 HOH HOH . P 6 HOH B 8 1911 30 HOH HOH . P 6 HOH B 9 1912 39 HOH HOH . P 6 HOH B 10 1913 40 HOH HOH . P 6 HOH B 11 1914 43 HOH HOH . P 6 HOH B 12 1915 48 HOH HOH . P 6 HOH B 13 1916 54 HOH HOH . P 6 HOH B 14 1917 58 HOH HOH . P 6 HOH B 15 1918 61 HOH HOH . P 6 HOH B 16 1919 65 HOH HOH . P 6 HOH B 17 1920 66 HOH HOH . P 6 HOH B 18 1921 71 HOH HOH . P 6 HOH B 19 1922 74 HOH HOH . P 6 HOH B 20 1923 78 HOH HOH . P 6 HOH B 21 1924 87 HOH HOH . P 6 HOH B 22 1925 90 HOH HOH . P 6 HOH B 23 1926 93 HOH HOH . P 6 HOH B 24 1927 97 HOH HOH . P 6 HOH B 25 1928 98 HOH HOH . P 6 HOH B 26 1929 101 HOH HOH . P 6 HOH B 27 1930 109 HOH HOH . P 6 HOH B 28 1931 114 HOH HOH . P 6 HOH B 29 1932 116 HOH HOH . P 6 HOH B 30 1933 118 HOH HOH . P 6 HOH B 31 1934 126 HOH HOH . P 6 HOH B 32 1935 128 HOH HOH . P 6 HOH B 33 1936 134 HOH HOH . P 6 HOH B 34 1937 137 HOH HOH . P 6 HOH B 35 1938 138 HOH HOH . P 6 HOH B 36 1939 139 HOH HOH . P 6 HOH B 37 1940 142 HOH HOH . P 6 HOH B 38 1941 145 HOH HOH . P 6 HOH B 39 1942 148 HOH HOH . P 6 HOH B 40 1943 161 HOH HOH . P 6 HOH B 41 1944 162 HOH HOH . P 6 HOH B 42 1945 163 HOH HOH . P 6 HOH B 43 1946 168 HOH HOH . P 6 HOH B 44 1947 181 HOH HOH . P 6 HOH B 45 1948 183 HOH HOH . P 6 HOH B 46 1949 201 HOH HOH . Q 6 HOH D 1 1602 9 HOH HOH . Q 6 HOH D 2 1603 26 HOH HOH . Q 6 HOH D 3 1604 29 HOH HOH . Q 6 HOH D 4 1605 34 HOH HOH . Q 6 HOH D 5 1606 37 HOH HOH . Q 6 HOH D 6 1607 44 HOH HOH . Q 6 HOH D 7 1608 46 HOH HOH . Q 6 HOH D 8 1609 47 HOH HOH . Q 6 HOH D 9 1610 55 HOH HOH . Q 6 HOH D 10 1611 57 HOH HOH . Q 6 HOH D 11 1612 67 HOH HOH . Q 6 HOH D 12 1613 68 HOH HOH . Q 6 HOH D 13 1614 69 HOH HOH . Q 6 HOH D 14 1615 80 HOH HOH . Q 6 HOH D 15 1616 82 HOH HOH . Q 6 HOH D 16 1617 83 HOH HOH . Q 6 HOH D 17 1618 88 HOH HOH . Q 6 HOH D 18 1619 92 HOH HOH . Q 6 HOH D 19 1620 100 HOH HOH . Q 6 HOH D 20 1621 103 HOH HOH . Q 6 HOH D 21 1622 120 HOH HOH . Q 6 HOH D 22 1623 124 HOH HOH . Q 6 HOH D 23 1624 127 HOH HOH . Q 6 HOH D 24 1625 129 HOH HOH . Q 6 HOH D 25 1626 143 HOH HOH . Q 6 HOH D 26 1627 151 HOH HOH . Q 6 HOH D 27 1628 153 HOH HOH . Q 6 HOH D 28 1629 156 HOH HOH . Q 6 HOH D 29 1630 173 HOH HOH . Q 6 HOH D 30 1631 177 HOH HOH . Q 6 HOH D 31 1632 182 HOH HOH . Q 6 HOH D 32 1633 186 HOH HOH . Q 6 HOH D 33 1634 189 HOH HOH . Q 6 HOH D 34 1635 195 HOH HOH . R 6 HOH E 1 1905 4 HOH HOH . R 6 HOH E 2 1906 7 HOH HOH . R 6 HOH E 3 1907 12 HOH HOH . R 6 HOH E 4 1908 15 HOH HOH . R 6 HOH E 5 1909 16 HOH HOH . R 6 HOH E 6 1910 17 HOH HOH . R 6 HOH E 7 1911 19 HOH HOH . R 6 HOH E 8 1912 20 HOH HOH . R 6 HOH E 9 1913 32 HOH HOH . R 6 HOH E 10 1914 35 HOH HOH . R 6 HOH E 11 1915 38 HOH HOH . R 6 HOH E 12 1916 53 HOH HOH . R 6 HOH E 13 1917 59 HOH HOH . R 6 HOH E 14 1918 63 HOH HOH . R 6 HOH E 15 1919 64 HOH HOH . R 6 HOH E 16 1920 76 HOH HOH . R 6 HOH E 17 1921 79 HOH HOH . R 6 HOH E 18 1922 85 HOH HOH . R 6 HOH E 19 1923 89 HOH HOH . R 6 HOH E 20 1924 91 HOH HOH . R 6 HOH E 21 1925 95 HOH HOH . R 6 HOH E 22 1926 96 HOH HOH . R 6 HOH E 23 1927 99 HOH HOH . R 6 HOH E 24 1928 104 HOH HOH . R 6 HOH E 25 1929 105 HOH HOH . R 6 HOH E 26 1930 106 HOH HOH . R 6 HOH E 27 1931 110 HOH HOH . R 6 HOH E 28 1932 111 HOH HOH . R 6 HOH E 29 1933 112 HOH HOH . R 6 HOH E 30 1934 113 HOH HOH . R 6 HOH E 31 1935 117 HOH HOH . R 6 HOH E 32 1936 119 HOH HOH . R 6 HOH E 33 1937 130 HOH HOH . R 6 HOH E 34 1938 131 HOH HOH . R 6 HOH E 35 1939 133 HOH HOH . R 6 HOH E 36 1940 140 HOH HOH . R 6 HOH E 37 1941 141 HOH HOH . R 6 HOH E 38 1942 146 HOH HOH . R 6 HOH E 39 1943 147 HOH HOH . R 6 HOH E 40 1944 150 HOH HOH . R 6 HOH E 41 1945 155 HOH HOH . R 6 HOH E 42 1946 158 HOH HOH . R 6 HOH E 43 1947 159 HOH HOH . R 6 HOH E 44 1948 166 HOH HOH . R 6 HOH E 45 1949 171 HOH HOH . R 6 HOH E 46 1950 172 HOH HOH . R 6 HOH E 47 1951 174 HOH HOH . R 6 HOH E 48 1952 176 HOH HOH . R 6 HOH E 49 1953 178 HOH HOH . R 6 HOH E 50 1954 180 HOH HOH . R 6 HOH E 51 1955 184 HOH HOH . R 6 HOH E 52 1956 185 HOH HOH . R 6 HOH E 53 1957 191 HOH HOH . R 6 HOH E 54 1958 192 HOH HOH . R 6 HOH E 55 1959 193 HOH HOH . R 6 HOH E 56 1960 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7P COA . . . N 4 9.106 6.381 91.789 1 62.06 ? C7P COA 1904 E 1 HETATM 2 C C6P COA . . . N 4 8.445 7.748 91.664 1 66.76 ? C6P COA 1904 E 1 HETATM 3 C C5P COA . . . N 4 6.854 7.968 91.627 1 68.67 ? C5P COA 1904 E 1 HETATM 4 O O5P COA . . . N 4 6.29 7.024 91.059 1 69.32 ? O5P COA 1904 E 1 HETATM 5 N N4P COA . . . N 4 6.169 9.046 92.11 1 69.08 ? N4P COA 1904 E 1 HETATM 6 C C3P COA . . . N 4 4.734 9.464 92.199 1 68.1 ? C3P COA 1904 E 1 HETATM 7 C C2P COA . . . N 4 4.545 11.014 92.3 1 68.62 ? C2P COA 1904 E 1 HETATM 8 S S1P COA . . . N 4 3.985 12.463 93.374 1 70.21 ? S1P COA 1904 E 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #