data_1JLR # _model_server_result.job_id hdC6OctW2tAI0JyaMQqKBQ _model_server_result.datetime_utc '2024-11-25 21:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":302}' # _entry.id 1JLR # _exptl.entry_id 1JLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115 _cell.angle_gamma 90 _cell.entry_id 1JLR _cell.length_a 60.6 _cell.length_b 141.8 _cell.length_c 71.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 M N N ? 3 P N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 1JLR _atom_sites.fract_transf_matrix[1][1] 0.016502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007695 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 805 299 PO4 PO4 . F 2 PO4 A 1 806 199 PO4 PO4 . G 3 GTP A 1 303 0 GTP GTP . H 2 PO4 B 1 800 799 PO4 PO4 . I 2 PO4 B 1 804 499 PO4 PO4 . J 3 GTP B 1 301 0 GTP GTP . K 2 PO4 D 1 799 799 PO4 PO4 . L 2 PO4 D 1 801 799 PO4 PO4 . M 3 GTP D 1 302 0 GTP GTP . N 2 PO4 C 1 802 799 PO4 PO4 . O 2 PO4 C 1 803 399 PO4 PO4 . P 3 GTP C 1 300 0 GTP GTP . Q 4 HOH A 1 807 11 HOH WAT . Q 4 HOH A 2 808 14 HOH WAT . Q 4 HOH A 3 809 21 HOH WAT . Q 4 HOH A 4 810 22 HOH WAT . Q 4 HOH A 5 811 28 HOH WAT . Q 4 HOH A 6 812 30 HOH WAT . Q 4 HOH A 7 813 37 HOH WAT . Q 4 HOH A 8 814 38 HOH WAT . Q 4 HOH A 9 815 43 HOH WAT . Q 4 HOH A 10 816 46 HOH WAT . Q 4 HOH A 11 817 64 HOH WAT . Q 4 HOH A 12 818 68 HOH WAT . Q 4 HOH A 13 819 75 HOH WAT . Q 4 HOH A 14 820 77 HOH WAT . Q 4 HOH A 15 821 79 HOH WAT . Q 4 HOH A 16 822 85 HOH WAT . Q 4 HOH A 17 823 95 HOH WAT . Q 4 HOH A 18 824 98 HOH WAT . Q 4 HOH A 19 825 104 HOH WAT . Q 4 HOH A 20 826 105 HOH WAT . Q 4 HOH A 21 827 106 HOH WAT . Q 4 HOH A 22 828 107 HOH WAT . Q 4 HOH A 23 829 112 HOH WAT . Q 4 HOH A 24 830 117 HOH WAT . Q 4 HOH A 25 831 118 HOH WAT . Q 4 HOH A 26 832 119 HOH WAT . Q 4 HOH A 27 833 131 HOH WAT . Q 4 HOH A 28 834 133 HOH WAT . Q 4 HOH A 29 835 141 HOH WAT . Q 4 HOH A 30 836 142 HOH WAT . Q 4 HOH A 31 837 143 HOH WAT . Q 4 HOH A 32 838 144 HOH WAT . Q 4 HOH A 33 839 149 HOH WAT . Q 4 HOH A 34 840 156 HOH WAT . Q 4 HOH A 35 841 163 HOH WAT . Q 4 HOH A 36 842 165 HOH WAT . Q 4 HOH A 37 843 167 HOH WAT . Q 4 HOH A 38 844 169 HOH WAT . R 4 HOH B 1 805 26 HOH WAT . R 4 HOH B 2 806 34 HOH WAT . R 4 HOH B 3 807 47 HOH WAT . R 4 HOH B 4 808 49 HOH WAT . R 4 HOH B 5 809 55 HOH WAT . R 4 HOH B 6 810 56 HOH WAT . R 4 HOH B 7 811 57 HOH WAT . R 4 HOH B 8 812 63 HOH WAT . R 4 HOH B 9 813 65 HOH WAT . R 4 HOH B 10 814 80 HOH WAT . R 4 HOH B 11 815 84 HOH WAT . R 4 HOH B 12 816 88 HOH WAT . R 4 HOH B 13 817 89 HOH WAT . R 4 HOH B 14 818 90 HOH WAT . R 4 HOH B 15 819 91 HOH WAT . R 4 HOH B 16 820 93 HOH WAT . R 4 HOH B 17 821 94 HOH WAT . R 4 HOH B 18 822 96 HOH WAT . R 4 HOH B 19 823 97 HOH WAT . R 4 HOH B 20 824 100 HOH WAT . R 4 HOH B 21 825 102 HOH WAT . R 4 HOH B 22 826 103 HOH WAT . R 4 HOH B 23 827 109 HOH WAT . R 4 HOH B 24 828 115 HOH WAT . R 4 HOH B 25 829 123 HOH WAT . R 4 HOH B 26 830 129 HOH WAT . R 4 HOH B 27 831 137 HOH WAT . R 4 HOH B 28 832 138 HOH WAT . R 4 HOH B 29 833 140 HOH WAT . R 4 HOH B 30 834 147 HOH WAT . R 4 HOH B 31 835 153 HOH WAT . R 4 HOH B 32 836 154 HOH WAT . R 4 HOH B 33 837 164 HOH WAT . S 4 HOH D 1 802 12 HOH WAT . S 4 HOH D 2 803 13 HOH WAT . S 4 HOH D 3 804 15 HOH WAT . S 4 HOH D 4 805 18 HOH WAT . S 4 HOH D 5 806 27 HOH WAT . S 4 HOH D 6 807 29 HOH WAT . S 4 HOH D 7 808 31 HOH WAT . S 4 HOH D 8 809 32 HOH WAT . S 4 HOH D 9 810 35 HOH WAT . S 4 HOH D 10 811 36 HOH WAT . S 4 HOH D 11 812 39 HOH WAT . S 4 HOH D 12 813 45 HOH WAT . S 4 HOH D 13 814 52 HOH WAT . S 4 HOH D 14 815 53 HOH WAT . S 4 HOH D 15 816 54 HOH WAT . S 4 HOH D 16 817 59 HOH WAT . S 4 HOH D 17 818 61 HOH WAT . S 4 HOH D 18 819 66 HOH WAT . S 4 HOH D 19 820 67 HOH WAT . S 4 HOH D 20 821 69 HOH WAT . S 4 HOH D 21 822 70 HOH WAT . S 4 HOH D 22 823 72 HOH WAT . S 4 HOH D 23 824 73 HOH WAT . S 4 HOH D 24 825 76 HOH WAT . S 4 HOH D 25 826 81 HOH WAT . S 4 HOH D 26 827 82 HOH WAT . S 4 HOH D 27 828 83 HOH WAT . S 4 HOH D 28 829 99 HOH WAT . S 4 HOH D 29 830 101 HOH WAT . S 4 HOH D 30 831 110 HOH WAT . S 4 HOH D 31 832 111 HOH WAT . S 4 HOH D 32 833 114 HOH WAT . S 4 HOH D 33 834 116 HOH WAT . S 4 HOH D 34 835 126 HOH WAT . S 4 HOH D 35 836 128 HOH WAT . S 4 HOH D 36 837 132 HOH WAT . S 4 HOH D 37 838 134 HOH WAT . S 4 HOH D 38 839 136 HOH WAT . S 4 HOH D 39 840 139 HOH WAT . S 4 HOH D 40 841 145 HOH WAT . S 4 HOH D 41 842 146 HOH WAT . S 4 HOH D 42 843 152 HOH WAT . S 4 HOH D 43 844 157 HOH WAT . S 4 HOH D 44 845 160 HOH WAT . S 4 HOH D 45 846 162 HOH WAT . T 4 HOH C 1 804 10 HOH WAT . T 4 HOH C 2 805 16 HOH WAT . T 4 HOH C 3 806 17 HOH WAT . T 4 HOH C 4 807 19 HOH WAT . T 4 HOH C 5 808 20 HOH WAT . T 4 HOH C 6 809 23 HOH WAT . T 4 HOH C 7 810 24 HOH WAT . T 4 HOH C 8 811 25 HOH WAT . T 4 HOH C 9 812 33 HOH WAT . T 4 HOH C 10 813 40 HOH WAT . T 4 HOH C 11 814 41 HOH WAT . T 4 HOH C 12 815 42 HOH WAT . T 4 HOH C 13 816 44 HOH WAT . T 4 HOH C 14 817 48 HOH WAT . T 4 HOH C 15 818 50 HOH WAT . T 4 HOH C 16 819 51 HOH WAT . T 4 HOH C 17 820 58 HOH WAT . T 4 HOH C 18 821 60 HOH WAT . T 4 HOH C 19 822 62 HOH WAT . T 4 HOH C 20 823 71 HOH WAT . T 4 HOH C 21 824 74 HOH WAT . T 4 HOH C 22 825 78 HOH WAT . T 4 HOH C 23 826 86 HOH WAT . T 4 HOH C 24 827 87 HOH WAT . T 4 HOH C 25 828 108 HOH WAT . T 4 HOH C 26 829 113 HOH WAT . T 4 HOH C 27 830 120 HOH WAT . T 4 HOH C 28 831 121 HOH WAT . T 4 HOH C 29 832 122 HOH WAT . T 4 HOH C 30 833 124 HOH WAT . T 4 HOH C 31 834 125 HOH WAT . T 4 HOH C 32 835 127 HOH WAT . T 4 HOH C 33 836 130 HOH WAT . T 4 HOH C 34 837 135 HOH WAT . T 4 HOH C 35 838 148 HOH WAT . T 4 HOH C 36 839 150 HOH WAT . T 4 HOH C 37 840 151 HOH WAT . T 4 HOH C 38 841 155 HOH WAT . T 4 HOH C 39 842 158 HOH WAT . T 4 HOH C 40 843 159 HOH WAT . T 4 HOH C 41 844 161 HOH WAT . T 4 HOH C 42 845 166 HOH WAT . T 4 HOH C 43 846 168 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . M 3 -19.484 74.483 79.212 1 78.69 ? PG GTP 302 D 1 HETATM 2 O O1G GTP . . . M 3 -19.963 75.753 79.812 1 79.5 ? O1G GTP 302 D 1 HETATM 3 O O2G GTP . . . M 3 -19.211 74.927 77.773 1 79.12 ? O2G GTP 302 D 1 HETATM 4 O O3G GTP . . . M 3 -20.724 73.671 79.301 1 80.39 ? O3G GTP 302 D 1 HETATM 5 O O3B GTP . . . M 3 -18.403 73.85 80.139 1 74 ? O3B GTP 302 D 1 HETATM 6 P PB GTP . . . M 3 -18.01 72.355 80.173 1 70.63 ? PB GTP 302 D 1 HETATM 7 O O1B GTP . . . M 3 -17.028 71.99 81.205 1 72.52 ? O1B GTP 302 D 1 HETATM 8 O O2B GTP . . . M 3 -19.341 71.752 80.243 1 71.65 ? O2B GTP 302 D 1 HETATM 9 O O3A GTP . . . M 3 -17.345 72.044 78.752 1 68.52 ? O3A GTP 302 D 1 HETATM 10 P PA GTP . . . M 3 -15.775 71.525 78.651 1 68.28 ? PA GTP 302 D 1 HETATM 11 O O1A GTP . . . M 3 -14.927 72.662 79.097 1 68.11 ? O1A GTP 302 D 1 HETATM 12 O O2A GTP . . . M 3 -15.638 70.251 79.366 1 65.42 ? O2A GTP 302 D 1 HETATM 13 O O5' GTP . . . M 3 -15.625 71.365 77.203 1 65.23 ? O5' GTP 302 D 1 HETATM 14 C C5' GTP . . . M 3 -14.921 70.276 76.579 1 58.96 ? C5' GTP 302 D 1 HETATM 15 C C4' GTP . . . M 3 -15.319 70.259 75.123 1 55.49 ? C4' GTP 302 D 1 HETATM 16 O O4' GTP . . . M 3 -14.253 70.65 74.209 1 53.15 ? O4' GTP 302 D 1 HETATM 17 C C3' GTP . . . M 3 -15.918 68.956 74.593 1 53.91 ? C3' GTP 302 D 1 HETATM 18 O O3' GTP . . . M 3 -17.336 69.054 74.529 1 55.14 ? O3' GTP 302 D 1 HETATM 19 C C2' GTP . . . M 3 -15.243 68.718 73.225 1 52.11 ? C2' GTP 302 D 1 HETATM 20 O O2' GTP . . . M 3 -16.147 68.807 72.134 1 52.51 ? O2' GTP 302 D 1 HETATM 21 C C1' GTP . . . M 3 -14.16 69.769 73.102 1 49.93 ? C1' GTP 302 D 1 HETATM 22 N N9 GTP . . . M 3 -12.776 69.216 72.998 1 43.65 ? N9 GTP 302 D 1 HETATM 23 C C8 GTP . . . M 3 -11.717 69.657 72.249 1 41.97 ? C8 GTP 302 D 1 HETATM 24 N N7 GTP . . . M 3 -10.64 68.961 72.354 1 40.38 ? N7 GTP 302 D 1 HETATM 25 C C5 GTP . . . M 3 -10.941 67.976 73.218 1 36.57 ? C5 GTP 302 D 1 HETATM 26 C C6 GTP . . . M 3 -10.143 66.883 73.721 1 33.08 ? C6 GTP 302 D 1 HETATM 27 O O6 GTP . . . M 3 -8.945 66.635 73.42 1 30.36 ? O6 GTP 302 D 1 HETATM 28 N N1 GTP . . . M 3 -10.854 66.023 74.659 1 31.64 ? N1 GTP 302 D 1 HETATM 29 C C2 GTP . . . M 3 -12.164 66.219 75.039 1 32.62 ? C2 GTP 302 D 1 HETATM 30 N N2 GTP . . . M 3 -12.667 65.345 75.906 1 30.6 ? N2 GTP 302 D 1 HETATM 31 N N3 GTP . . . M 3 -12.925 67.225 74.578 1 37.36 ? N3 GTP 302 D 1 HETATM 32 C C4 GTP . . . M 3 -12.265 68.086 73.661 1 38.8 ? C4 GTP 302 D 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #