data_1JMA # _model_server_result.job_id wJ1wY4PiL6WMdvaXp-kggg _model_server_result.datetime_utc '2024-12-18 20:53:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1jma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":528}' # _entry.id 1JMA # _exptl.entry_id 1JMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1JMA _cell.length_a 129.154 _cell.length_b 129.154 _cell.length_c 80.94 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG Y 366 NAG 3 n C NAG 2 C 2 NAG Y 367 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 B CYS 4 1_555 A SG CYS 15 B CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 16 B CYS 16 1_555 A SG CYS 29 B CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 A SG CYS 19 B CYS 19 1_555 A SG CYS 37 B CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 40 B CYS 40 1_555 A SG CYS 55 B CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 58 B CYS 58 1_555 A SG CYS 73 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 A SG CYS 61 B CYS 61 1_555 A SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 A SG CYS 83 B CYS 83 1_555 A SG CYS 100 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 A SG CYS 89 B CYS 89 1_555 A SG CYS 97 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf9 B SG CYS 66 A CYS 66 1_555 B SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf10 B SG CYS 106 A CYS 106 1_555 B SG CYS 202 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf11 B SG CYS 118 A CYS 118 1_555 B SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 B ND2 ASN 94 A ASN 94 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale2 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 1JMA _atom_sites.fract_transf_matrix[1][1] 0.007743 _atom_sites.fract_transf_matrix[1][2] 0.00447 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 B 1 526 526 SO4 SO4 . E 4 SO4 B 1 529 529 SO4 SO4 . F 4 SO4 A 1 525 525 SO4 SO4 . G 4 SO4 A 1 527 527 SO4 SO4 . H 4 SO4 A 1 528 528 SO4 SO4 . I 5 HOH B 1 530 3 HOH HOH . I 5 HOH B 2 531 23 HOH HOH . I 5 HOH B 3 532 27 HOH HOH . I 5 HOH B 4 533 37 HOH HOH . J 5 HOH A 1 529 1 HOH HOH . J 5 HOH A 2 530 2 HOH HOH . J 5 HOH A 3 531 4 HOH HOH . J 5 HOH A 4 532 5 HOH HOH . J 5 HOH A 5 533 6 HOH HOH . J 5 HOH A 6 534 7 HOH HOH . J 5 HOH A 7 535 8 HOH HOH . J 5 HOH A 8 536 9 HOH HOH . J 5 HOH A 9 537 10 HOH HOH . J 5 HOH A 10 538 11 HOH HOH . J 5 HOH A 11 539 12 HOH HOH . J 5 HOH A 12 540 13 HOH HOH . J 5 HOH A 13 541 14 HOH HOH . J 5 HOH A 14 542 15 HOH HOH . J 5 HOH A 15 543 16 HOH HOH . J 5 HOH A 16 544 17 HOH HOH . J 5 HOH A 17 545 18 HOH HOH . J 5 HOH A 18 546 19 HOH HOH . J 5 HOH A 19 547 20 HOH HOH . J 5 HOH A 20 548 21 HOH HOH . J 5 HOH A 21 549 22 HOH HOH . J 5 HOH A 22 550 24 HOH HOH . J 5 HOH A 23 551 25 HOH HOH . J 5 HOH A 24 552 26 HOH HOH . J 5 HOH A 25 553 28 HOH HOH . J 5 HOH A 26 554 29 HOH HOH . J 5 HOH A 27 555 30 HOH HOH . J 5 HOH A 28 556 31 HOH HOH . J 5 HOH A 29 557 32 HOH HOH . J 5 HOH A 30 558 33 HOH HOH . J 5 HOH A 31 559 34 HOH HOH . J 5 HOH A 32 560 35 HOH HOH . J 5 HOH A 33 561 36 HOH HOH . J 5 HOH A 34 562 38 HOH HOH . J 5 HOH A 35 563 39 HOH HOH . J 5 HOH A 36 564 40 HOH HOH . J 5 HOH A 37 565 41 HOH HOH . J 5 HOH A 38 566 42 HOH HOH . J 5 HOH A 39 567 43 HOH HOH . J 5 HOH A 40 568 44 HOH HOH . J 5 HOH A 41 569 45 HOH HOH . J 5 HOH A 42 570 46 HOH HOH . J 5 HOH A 43 571 47 HOH HOH . J 5 HOH A 44 572 48 HOH HOH . J 5 HOH A 45 573 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 4 -7.623 81.635 -2.255 1 96.83 ? S SO4 528 A 1 HETATM 2 O O1 SO4 . . . H 4 -8.52 81.216 -1.161 1 98.38 ? O1 SO4 528 A 1 HETATM 3 O O2 SO4 . . . H 4 -8.049 82.958 -2.736 1 99.5 ? O2 SO4 528 A 1 HETATM 4 O O3 SO4 . . . H 4 -7.696 80.685 -3.381 1 98.29 ? O3 SO4 528 A 1 HETATM 5 O O4 SO4 . . . H 4 -6.241 81.707 -1.736 1 98.04 ? O4 SO4 528 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #