data_1JMT
#
_model_server_result.job_id            s0Y32y4oSPHLwSzoAvoShQ 
_model_server_result.datetime_utc      '2025-08-02 09:29:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1jmt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    1JMT 
#
_exptl.entry_id    1JMT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEXANE-1,6-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1JMT 
_cell.length_a            41.52 
_cell.length_b            49.74 
_cell.length_c            92.16 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1JMT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        16 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                HEZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEXANE-1,6-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 HEZ sing 129 n n 
O1 HO1 HEZ sing 130 n n 
C1 C2 HEZ sing 131 n n 
C1 H11 HEZ sing 132 n n 
C1 H12 HEZ sing 133 n n 
C2 C3 HEZ sing 134 n n 
C2 H21 HEZ sing 135 n n 
C2 H22 HEZ sing 136 n n 
C3 C4 HEZ sing 137 n n 
C3 H31 HEZ sing 138 n n 
C3 H32 HEZ sing 139 n n 
C4 C5 HEZ sing 140 n n 
C4 H41 HEZ sing 141 n n 
C4 H42 HEZ sing 142 n n 
C5 C6 HEZ sing 143 n n 
C5 H51 HEZ sing 144 n n 
C5 H52 HEZ sing 145 n n 
C6 O6 HEZ sing 146 n n 
C6 H61 HEZ sing 147 n n 
C6 H62 HEZ sing 148 n n 
O6 HO6 HEZ sing 149 n n 
#
_atom_sites.entry_id                     1JMT 
_atom_sites.fract_transf_matrix[1][1]    0.024085 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020105 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010851 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEZ A 1 202 2 HEZ HEZ . 
D 3 HEZ B 1 201 1 HEZ HEZ . 
E 4 HOH A 1 203 4 HOH TIP . 
E 4 HOH A 2 204 5 HOH TIP . 
E 4 HOH A 3 205 7 HOH TIP . 
E 4 HOH A 4 206 10 HOH TIP . 
E 4 HOH A 5 207 11 HOH TIP . 
E 4 HOH A 6 208 14 HOH TIP . 
E 4 HOH A 7 209 15 HOH TIP . 
E 4 HOH A 8 210 17 HOH TIP . 
E 4 HOH A 9 211 18 HOH TIP . 
E 4 HOH A 10 212 19 HOH TIP . 
E 4 HOH A 11 213 20 HOH TIP . 
E 4 HOH A 12 214 21 HOH TIP . 
E 4 HOH A 13 215 22 HOH TIP . 
E 4 HOH A 14 216 24 HOH TIP . 
E 4 HOH A 15 217 25 HOH TIP . 
E 4 HOH A 16 218 27 HOH TIP . 
E 4 HOH A 17 219 28 HOH TIP . 
E 4 HOH A 18 220 29 HOH TIP . 
E 4 HOH A 19 221 32 HOH TIP . 
E 4 HOH A 20 222 33 HOH TIP . 
E 4 HOH A 21 223 35 HOH TIP . 
E 4 HOH A 22 224 36 HOH TIP . 
E 4 HOH A 23 225 37 HOH TIP . 
E 4 HOH A 24 226 38 HOH TIP . 
E 4 HOH A 25 227 41 HOH TIP . 
E 4 HOH A 26 228 42 HOH TIP . 
E 4 HOH A 27 229 43 HOH TIP . 
E 4 HOH A 28 230 45 HOH TIP . 
E 4 HOH A 29 231 46 HOH TIP . 
E 4 HOH A 30 232 47 HOH TIP . 
E 4 HOH A 31 233 48 HOH TIP . 
E 4 HOH A 32 234 50 HOH TIP . 
E 4 HOH A 33 235 51 HOH TIP . 
E 4 HOH A 34 236 53 HOH TIP . 
E 4 HOH A 35 237 55 HOH TIP . 
E 4 HOH A 36 238 56 HOH TIP . 
E 4 HOH A 37 239 59 HOH TIP . 
E 4 HOH A 38 240 60 HOH TIP . 
E 4 HOH A 39 241 64 HOH TIP . 
E 4 HOH A 40 242 65 HOH TIP . 
E 4 HOH A 41 243 66 HOH TIP . 
E 4 HOH A 42 244 68 HOH TIP . 
E 4 HOH A 43 245 69 HOH TIP . 
E 4 HOH A 44 246 70 HOH TIP . 
E 4 HOH A 45 247 71 HOH TIP . 
E 4 HOH A 46 248 72 HOH TIP . 
E 4 HOH A 47 249 73 HOH TIP . 
E 4 HOH A 48 250 74 HOH TIP . 
E 4 HOH A 49 251 75 HOH TIP . 
E 4 HOH A 50 252 76 HOH TIP . 
E 4 HOH A 51 253 78 HOH TIP . 
E 4 HOH A 52 254 79 HOH TIP . 
E 4 HOH A 53 255 82 HOH TIP . 
E 4 HOH A 54 256 83 HOH TIP . 
E 4 HOH A 55 257 84 HOH TIP . 
E 4 HOH A 56 258 85 HOH TIP . 
E 4 HOH A 57 259 86 HOH TIP . 
E 4 HOH A 58 260 87 HOH TIP . 
E 4 HOH A 59 261 88 HOH TIP . 
E 4 HOH A 60 262 89 HOH TIP . 
E 4 HOH A 61 263 90 HOH TIP . 
E 4 HOH A 62 264 91 HOH TIP . 
E 4 HOH A 63 265 92 HOH TIP . 
E 4 HOH A 64 266 93 HOH TIP . 
E 4 HOH A 65 267 94 HOH TIP . 
E 4 HOH A 66 268 95 HOH TIP . 
E 4 HOH A 67 269 96 HOH TIP . 
E 4 HOH A 68 270 97 HOH TIP . 
E 4 HOH A 69 271 98 HOH TIP . 
E 4 HOH A 70 272 99 HOH TIP . 
E 4 HOH A 71 273 100 HOH TIP . 
E 4 HOH A 72 274 101 HOH TIP . 
E 4 HOH A 73 275 103 HOH TIP . 
E 4 HOH A 74 276 104 HOH TIP . 
E 4 HOH A 75 277 105 HOH TIP . 
E 4 HOH A 76 278 106 HOH TIP . 
E 4 HOH A 77 279 107 HOH TIP . 
E 4 HOH A 78 280 108 HOH TIP . 
E 4 HOH A 79 281 109 HOH TIP . 
E 4 HOH A 80 282 110 HOH TIP . 
E 4 HOH A 81 283 111 HOH TIP . 
E 4 HOH A 82 284 112 HOH TIP . 
E 4 HOH A 83 285 113 HOH TIP . 
E 4 HOH A 84 286 114 HOH TIP . 
E 4 HOH A 85 287 116 HOH TIP . 
E 4 HOH A 86 288 118 HOH TIP . 
F 4 HOH B 1 202 1 HOH TIP . 
F 4 HOH B 2 203 2 HOH TIP . 
F 4 HOH B 3 204 3 HOH TIP . 
F 4 HOH B 4 205 6 HOH TIP . 
F 4 HOH B 5 206 8 HOH TIP . 
F 4 HOH B 6 207 9 HOH TIP . 
F 4 HOH B 7 208 12 HOH TIP . 
F 4 HOH B 8 209 13 HOH TIP . 
F 4 HOH B 9 210 16 HOH TIP . 
F 4 HOH B 10 211 23 HOH TIP . 
F 4 HOH B 11 212 26 HOH TIP . 
F 4 HOH B 12 213 30 HOH TIP . 
F 4 HOH B 13 214 31 HOH TIP . 
F 4 HOH B 14 215 34 HOH TIP . 
F 4 HOH B 15 216 39 HOH TIP . 
F 4 HOH B 16 217 40 HOH TIP . 
F 4 HOH B 17 218 44 HOH TIP . 
F 4 HOH B 18 219 49 HOH TIP . 
F 4 HOH B 19 220 52 HOH TIP . 
F 4 HOH B 20 221 54 HOH TIP . 
F 4 HOH B 21 222 57 HOH TIP . 
F 4 HOH B 22 223 58 HOH TIP . 
F 4 HOH B 23 224 61 HOH TIP . 
F 4 HOH B 24 225 62 HOH TIP . 
F 4 HOH B 25 226 63 HOH TIP . 
F 4 HOH B 26 227 67 HOH TIP . 
F 4 HOH B 27 228 77 HOH TIP . 
F 4 HOH B 28 229 80 HOH TIP . 
F 4 HOH B 29 230 81 HOH TIP . 
F 4 HOH B 30 231 102 HOH TIP . 
F 4 HOH B 31 232 115 HOH TIP . 
F 4 HOH B 32 233 117 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 HEZ . . . D 3 24.818 22.05 45.426 0.5 39.94 ? O1 HEZ 201 B 1 
HETATM 2 C C1 HEZ . . . D 3 23.874 21.317 46.196 0.5 43.04 ? C1 HEZ 201 B 1 
HETATM 3 C C2 HEZ . . . D 3 22.826 22.285 46.785 0.5 46.11 ? C2 HEZ 201 B 1 
HETATM 4 C C3 HEZ . . . D 3 21.489 21.552 46.997 0.5 48.97 ? C3 HEZ 201 B 1 
HETATM 5 C C4 HEZ . . . D 3 20.408 20.636 46.395 0.5 38.8 ? C4 HEZ 201 B 1 
HETATM 6 C C5 HEZ . . . D 3 19.389 21.462 45.574 0.5 34.91 ? C5 HEZ 201 B 1 
HETATM 7 C C6 HEZ . . . D 3 17.978 21.262 46.145 0.5 25.51 ? C6 HEZ 201 B 1 
HETATM 8 O O6 HEZ . . . D 3 16.644 20.827 46.342 0.5 25.26 ? O6 HEZ 201 B 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#